Miyakogusa Predicted Gene
- Lj4g3v2603760.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2603760.1 tr|G7LHV5|G7LHV5_MEDTR Small ubiquitin-related
modifier OS=Medicago truncatula GN=MTR_8g085320 PE=4 ,46.32,1e-16,no
description,NULL; Rad60-SLD,Small ubiquitin-related modifier, SUMO;
Ubiquitin-like,NULL,gene.g57057.t1.1
(102 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55160.1 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiq... 77 2e-15
AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small ubiq... 69 7e-13
AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiq... 68 1e-12
AT2G32765.1 | Symbols: SUM5, SUMO5, ATSUMO5 | small ubiquitinrel... 64 2e-11
AT5G55856.1 | Symbols: | Ubiquitin-like superfamily protein | c... 55 1e-08
AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | small ubiq... 54 2e-08
AT5G48710.1 | Symbols: | Ubiquitin-like superfamily protein | c... 47 2e-06
>AT5G55160.1 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small
ubiquitin-like modifier 2 | chr5:22383747-22384772
REVERSE LENGTH=103
Length = 103
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 65/98 (66%), Gaps = 5/98 (5%)
Query: 4 SSQPSKRKAPTEEAGPADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETM 63
S+ P + K P + A +++ +KGQDG ++FF++ + +L ++YC+R ++++ ++
Sbjct: 2 SATPEEDKKPDQGA----HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSI 57
Query: 64 QFLHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQSGGGV 101
FL DG+ ++ + QTP L +++GDEI A+ HQ+GGG
Sbjct: 58 AFLFDGRRLRAE-QTPDELEMEDGDEIDAMLHQTGGGA 94
>AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small
ubiquitin-like modifier 1 | chr4:13497466-13498458
FORWARD LENGTH=100
Length = 100
Score = 68.6 bits (166), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 15 EEAGPAD---YVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQFLHDGQY 71
E+ P D +++ +KGQDG ++FF++ + +L ++YC+R +++ ++ FL DG+
Sbjct: 7 EDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRR 66
Query: 72 VKGKRQTPKMLNLKNGDEIVAVRHQS 97
++ + QTP L++++GDEI A+ HQ+
Sbjct: 67 LRAE-QTPDELDMEDGDEIDAMLHQT 91
>AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small
ubiquitin-like modifier 2 | chr5:22383747-22384772
REVERSE LENGTH=116
Length = 116
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 65/110 (59%), Gaps = 18/110 (16%)
Query: 4 SSQPSKRKAPTEEAGPADYVHFSIKGQ-------------DGRQLFFKVNKEAKLFNAFS 50
S+ P + K P + A +++ +KGQ DG ++FF++ + +L +
Sbjct: 2 SATPEEDKKPDQGA----HINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLKKLMN 57
Query: 51 SYCERVNLEYETMQFLHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQSGGG 100
+YC+R ++++ ++ FL DG+ ++ + QTP L +++GDEI A+ HQ+GGG
Sbjct: 58 AYCDRQSVDFNSIAFLFDGRRLRAE-QTPDELEMEDGDEIDAMLHQTGGG 106
>AT2G32765.1 | Symbols: SUM5, SUMO5, ATSUMO5 | small
ubiquitinrelated modifier 5 | chr2:13894968-13895399
FORWARD LENGTH=108
Length = 108
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 10 RKAPTEEAGPADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQFLHDG 69
+K+ + E P V +K Q G + +K+ A L S+YC + NL+Y +++F+++G
Sbjct: 15 KKSRSPETSPHMKVTLKVKNQQGAEDLYKIGTHAHLKKLMSAYCTKRNLDYSSVRFVYNG 74
Query: 70 QYVKGKRQTPKMLNLKNGDEIVAVRHQSGGG 100
+ +K RQTP L+++ DEI V GGG
Sbjct: 75 REIKA-RQTPAQLHMEEEDEICMVMELGGGG 104
>AT5G55856.1 | Symbols: | Ubiquitin-like superfamily protein |
chr5:22607927-22608640 FORWARD LENGTH=97
Length = 97
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 19 PADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQFLHDGQYVKGKRQT 78
P+ ++ +K QD ++F++ ++ +L +Y ++V +E T++FL DG +K QT
Sbjct: 11 PSSHITVKVKNQDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRIK-LNQT 69
Query: 79 PKMLNLKNGDEIVAVRHQSGG 99
P L L++ DEI A Q GG
Sbjct: 70 PNELGLEDEDEIEAFGEQLGG 90
>AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | small
ubiquitin-like modifier 3 | chr5:22385468-22386071
REVERSE LENGTH=111
Length = 111
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 5 SQPSKRKAPTEEAGPADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQ 64
S P K P ++ A +V +K QDG ++ FK K A L YC+R L+ +
Sbjct: 2 SNPQDDK-PIDQEQEA-HVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFA 59
Query: 65 FLHDGQYVKGKRQTPKMLNLKNGDEIVAVRHQSGG 99
F+ +G + G +TP L++++GD I A R SGG
Sbjct: 60 FIFNGARI-GGLETPDELDMEDGDVIDACRAMSGG 93
>AT5G48710.1 | Symbols: | Ubiquitin-like superfamily protein |
chr5:19755065-19755572 REVERSE LENGTH=114
Length = 114
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 22 YVHFSIKGQDGRQL-FFKVNKEAKLFNAFSSYCERVNLEYETMQFLHDGQYVKGKRQTPK 80
+V +KGQD F V + AKL Y + +E+ T +FL DG ++ + TP
Sbjct: 27 HVTLKVKGQDEEDFRVFWVRRNAKLLKMMELYTKMRGIEWNTFRFLFDGSRIR-EYHTPD 85
Query: 81 MLNLKNGDEIVAVRHQSGG 99
L K+GDEI A+ Q G
Sbjct: 86 ELERKDGDEIDAMLCQQSG 104