Miyakogusa Predicted Gene

Lj4g3v2603650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2603650.1 tr|I0Z5S5|I0Z5S5_9CHLO Terpenoid cyclases/Protein
prenyltransferase (Fragment) OS=Coccomyxa
subellip,26.7,0.00000000002,Terpenoid cyclases/Protein
prenyltransferases,Terpenoid cyclases/protein prenyltransferase
alpha-alp,CUFF.51215.1
         (313 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12210.1 | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl trans...   526   e-150
AT3G12070.2 | Symbols:  | RAB geranylgeranyl transferase beta su...   524   e-149
AT3G12070.1 | Symbols: AtRGTB2, RGTB2 | RAB geranylgeranyl trans...   524   e-149
AT5G12210.2 | Symbols:  | RAB geranylgeranyl transferase beta su...   521   e-148
AT2G39550.1 | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase...   149   2e-36
AT5G40280.1 | Symbols: ERA1, ATFTB, WIG | Prenyltransferase fami...   107   1e-23

>AT5G12210.1 | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl
           transferase beta subunit 1 | chr5:3947254-3949595
           FORWARD LENGTH=321
          Length = 321

 Score =  526 bits (1356), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/313 (81%), Positives = 286/313 (91%)

Query: 1   MGELVSEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSW 60
           M +LV++KHVRYIL  EK+K++FESVVM+HLRMNGAYWGLT LDLL KL  V  +EV+SW
Sbjct: 9   MVQLVADKHVRYILMAEKKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISW 68

Query: 61  VMSCQDESGGFAGNVGHDPHILYTLSAVQVLALFDKLDAIDVDRVTNYIVSLQNEDGSFS 120
           +M+CQ ESGGFAGN GHDPHILYTLSAVQ+LALFDK++ +D+ +V++Y+  LQNEDGSFS
Sbjct: 69  LMTCQHESGGFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFS 128

Query: 121 GDTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180
           GD WGE+DTRFSYIAICCLSIL+ LDKINVEKAVKYI+SCKN+DGGFGCTPG ESHAGQI
Sbjct: 129 GDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQI 188

Query: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240
           FCCVGALAITGSL  VDKD LGWWLCERQ+K+GGLNGRPEKL DVCYSWWVLSSLIMIDR
Sbjct: 189 FCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVLSSLIMIDR 248

Query: 241 VHWISKEKLIKFILDCQDTENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYA 300
           VHWI K KL+KFILDCQD +NGGISDRP+DAVD+FHTYFGVAGLSLLEYPG+K IDPAYA
Sbjct: 249 VHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGVAGLSLLEYPGVKVIDPAYA 308

Query: 301 LPVDVVNRIFFSK 313
           LPVDVVNRI F+K
Sbjct: 309 LPVDVVNRIIFTK 321


>AT3G12070.2 | Symbols:  | RAB geranylgeranyl transferase beta
           subunit 2 | chr3:3845420-3847140 REVERSE LENGTH=317
          Length = 317

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/314 (79%), Positives = 282/314 (89%), Gaps = 3/314 (0%)

Query: 3   ELVSEKHVRYILSV--EKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSW 60
           +LV+ KH+RYIL++  EK+K++FESVVM+HLRMNGAYWGLT L LL KL +V  DEVVSW
Sbjct: 4   KLVAGKHLRYILNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSW 63

Query: 61  VMSCQDESGGFAGNVGHDPHILYTLSAVQVLALFDKLDAIDVDRVTNYIVSLQNEDGSFS 120
           VM+CQ ESGGFAGN GHDPH+LYTLSAVQ+LALFDKL+ +DV++V+NYI  LQNEDGSFS
Sbjct: 64  VMTCQHESGGFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFS 123

Query: 121 GDTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180
           GD WGEVDTRFSYIAICCLSIL+ LDKINV+KAV YI+SCKN+DGGFGC+PG ESHAGQI
Sbjct: 124 GDIWGEVDTRFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQI 183

Query: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVCYSWWVLSSLIMID 239
           FCCVGALAITG+L  VDKDLLGWWLCERQ  +SGGLNGRPEKLPDVCYSWWVLSSLIMID
Sbjct: 184 FCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMID 243

Query: 240 RVHWISKEKLIKFILDCQDTENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAY 299
           RVHWI K KL+KFILD QD +NGGISDRP   VD+FHTYFGVAGLSLLEYPG+K IDPAY
Sbjct: 244 RVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYFGVAGLSLLEYPGVKTIDPAY 303

Query: 300 ALPVDVVNRIFFSK 313
           ALPV V+NRI F+K
Sbjct: 304 ALPVHVINRILFTK 317


>AT3G12070.1 | Symbols: AtRGTB2, RGTB2 | RAB geranylgeranyl
           transferase beta subunit 2 | chr3:3845420-3847140
           REVERSE LENGTH=317
          Length = 317

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/314 (79%), Positives = 282/314 (89%), Gaps = 3/314 (0%)

Query: 3   ELVSEKHVRYILSV--EKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSW 60
           +LV+ KH+RYIL++  EK+K++FESVVM+HLRMNGAYWGLT L LL KL +V  DEVVSW
Sbjct: 4   KLVAGKHLRYILNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSW 63

Query: 61  VMSCQDESGGFAGNVGHDPHILYTLSAVQVLALFDKLDAIDVDRVTNYIVSLQNEDGSFS 120
           VM+CQ ESGGFAGN GHDPH+LYTLSAVQ+LALFDKL+ +DV++V+NYI  LQNEDGSFS
Sbjct: 64  VMTCQHESGGFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFS 123

Query: 121 GDTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180
           GD WGEVDTRFSYIAICCLSIL+ LDKINV+KAV YI+SCKN+DGGFGC+PG ESHAGQI
Sbjct: 124 GDIWGEVDTRFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQI 183

Query: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVCYSWWVLSSLIMID 239
           FCCVGALAITG+L  VDKDLLGWWLCERQ  +SGGLNGRPEKLPDVCYSWWVLSSLIMID
Sbjct: 184 FCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMID 243

Query: 240 RVHWISKEKLIKFILDCQDTENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAY 299
           RVHWI K KL+KFILD QD +NGGISDRP   VD+FHTYFGVAGLSLLEYPG+K IDPAY
Sbjct: 244 RVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYFGVAGLSLLEYPGVKTIDPAY 303

Query: 300 ALPVDVVNRIFFSK 313
           ALPV V+NRI F+K
Sbjct: 304 ALPVHVINRILFTK 317


>AT5G12210.2 | Symbols:  | RAB geranylgeranyl transferase beta
           subunit 1 | chr5:3947254-3949595 FORWARD LENGTH=320
          Length = 320

 Score =  521 bits (1341), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/313 (81%), Positives = 285/313 (91%), Gaps = 1/313 (0%)

Query: 1   MGELVSEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSW 60
           M +LV++KHVRYIL  EK K++FESVVM+HLRMNGAYWGLT LDLL KL  V  +EV+SW
Sbjct: 9   MVQLVADKHVRYILMAEK-KESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISW 67

Query: 61  VMSCQDESGGFAGNVGHDPHILYTLSAVQVLALFDKLDAIDVDRVTNYIVSLQNEDGSFS 120
           +M+CQ ESGGFAGN GHDPHILYTLSAVQ+LALFDK++ +D+ +V++Y+  LQNEDGSFS
Sbjct: 68  LMTCQHESGGFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFS 127

Query: 121 GDTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180
           GD WGE+DTRFSYIAICCLSIL+ LDKINVEKAVKYI+SCKN+DGGFGCTPG ESHAGQI
Sbjct: 128 GDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQI 187

Query: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240
           FCCVGALAITGSL  VDKD LGWWLCERQ+K+GGLNGRPEKL DVCYSWWVLSSLIMIDR
Sbjct: 188 FCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVLSSLIMIDR 247

Query: 241 VHWISKEKLIKFILDCQDTENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYA 300
           VHWI K KL+KFILDCQD +NGGISDRP+DAVD+FHTYFGVAGLSLLEYPG+K IDPAYA
Sbjct: 248 VHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGVAGLSLLEYPGVKVIDPAYA 307

Query: 301 LPVDVVNRIFFSK 313
           LPVDVVNRI F+K
Sbjct: 308 LPVDVVNRIIFTK 320


>AT2G39550.1 | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase
           family protein | chr2:16501666-16504144 FORWARD
           LENGTH=375
          Length = 375

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 159/335 (47%), Gaps = 41/335 (12%)

Query: 7   EKHVRYI-LSVEKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSWVMSCQ 65
           ++H+ Y+ +  E    +++S  +  L +  A++ ++ L  LG    VD D V  WV+S Q
Sbjct: 38  DRHLMYLEMMYELLPYHYQSQEINRLTL--AHFIISGLHFLGARDRVDKDVVAKWVLSFQ 95

Query: 66  D--------ESGGFAGNVG----------------HDPHILYTLSAVQVLALFDK-LDAI 100
                    + G F G  G                +  H+  T  A+ +L +    L  I
Sbjct: 96  AFPTNRVSLKDGEFYGFFGSRSSQFPIDENGDLKHNGSHLASTYCALAILKVIGHDLSTI 155

Query: 101 DVDRVTNYIVSLQNEDGSFSG-DTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYIIS 159
           D   +   +++LQ +DGSF      GE D RF Y A     +L     ++ E A  YI++
Sbjct: 156 DSKSLLISMINLQQDDGSFMPIHIGGETDLRFVYCAAAICYMLDSWSGMDKESAKNYILN 215

Query: 160 CKNMDGGFGCTPGGESHAGQIFCCVGALAITGSLDL-----------VDKDLLGWWLCER 208
           C++ DGGFG  PG ESH G  +C + +L + G + +           +D  LL  W  +R
Sbjct: 216 CQSYDGGFGLIPGSESHGGATYCAIASLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQR 275

Query: 209 QVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWISKEKLIKFILDCQDTENGGISDRP 268
           Q   GG  GR  K  D CY++W+ + L +I     I K  L KF++ CQ ++ GG S  P
Sbjct: 276 QANDGGFQGRTNKPSDTCYAFWIGAVLKLIGGDALIDKMALRKFLMSCQ-SKYGGFSKFP 334

Query: 269 DDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
               D++H+Y+G    SLLE  GL P+ P   LP+
Sbjct: 335 GQLPDLYHSYYGYTAFSLLEEQGLSPLCPELGLPL 369


>AT5G40280.1 | Symbols: ERA1, ATFTB, WIG | Prenyltransferase family
           protein | chr5:16101391-16104783 FORWARD LENGTH=482
          Length = 482

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 113/213 (53%), Gaps = 10/213 (4%)

Query: 37  YWGLTALDLLGKLHTVDVDEV----VSWVMSCQDESGGFAGNVGHDPHILYTLSAVQVLA 92
           YW L ++ LLG+  TVD DE+    + ++  CQ   GG+ G  G  PH+  T +AV  L 
Sbjct: 113 YWILHSIALLGE--TVD-DELESNAIDFLGRCQGSEGGYGGGPGQLPHLATTYAAVNALV 169

Query: 93  LF--DK-LDAIDVDRVTNYIVSLQNEDGSFSGDTWGEVDTRFSYIAICCLSILRRLDKIN 149
               DK L +I+ ++++ ++  +++  G F     GE+D R  Y AI   SIL  +D   
Sbjct: 170 TLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASILNIMDDEL 229

Query: 150 VEKAVKYIISCKNMDGGFGCTPGGESHAGQIFCCVGALAITGSLDLVDKDLLGWWLCERQ 209
            +    YI+SC+  +GG G  PG E+H G  +C + A+ +   +D ++ D L  W   RQ
Sbjct: 230 TQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAVHRQ 289

Query: 210 VKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVH 242
               G  GR  KL D CY++W  +  +++ R++
Sbjct: 290 GVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLY 322



 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 132 SYIAICCLSIL---RRLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQIFCCVGALA 188
           +Y A+  L  L   + L  IN EK   ++   K+  GGF     GE     +  C  A++
Sbjct: 161 TYAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEM---DVRACYTAIS 217

Query: 189 ITGSLDLVDKDL---LGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIS 245
           +   L+++D +L   LG ++   Q   GG+ G P       Y++  L+++I+I+ V  ++
Sbjct: 218 VASILNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLN 277

Query: 246 KEKLIKFILDCQDTENGGISDRPDDAVDVFHTYFGVAGLSLLE 288
            + L+ + +  Q  E  G   R +  VD  +T++  A   LL+
Sbjct: 278 LDSLMNWAVHRQGVEM-GFQGRTNKLVDGCYTFWQAAPCVLLQ 319



 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 41  TALDLLGKLHTVDVDEVVS----WVMSCQDESGGFAGNVGHDPHILYTLSAVQVLALFDK 96
           TA+ +   L+ +D DE+      +++SCQ   GG  G  G + H  YT   +  + L ++
Sbjct: 214 TAISVASILNIMD-DELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINE 272

Query: 97  LDAIDVDRVTNYIVSLQNEDGSFSGDTWGEVDTRFSYIAICCLSILRRLDKIN 149
           +D +++D + N+ V  Q  +  F G T   VD  +++       +L+RL   N
Sbjct: 273 VDRLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTN 325