Miyakogusa Predicted Gene

Lj4g3v2578190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2578190.1 Non Chatacterized Hit- tr|F6I4D0|F6I4D0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,28.31,0.000000000009,coiled-coil,NULL; seg,NULL,CUFF.51179.1
         (1239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23740.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   147   4e-35

>AT3G23740.1 | Symbols:  | unknown protein; FUNCTIONS IN:
            molecular_function unknown; INVOLVED IN:
            biological_process unknown; LOCATED IN: chloroplast;
            EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C
            globular stage, F mature embryo stage, petal
            differentiation and expansion stage, E expanded cotyledon
            stage, D bilateral stage; BEST Arabidopsis thaliana
            protein match is: unknown protein (TAIR:AT4G14120.1); Has
            155 Blast hits to 130 proteins in 48 species: Archae - 0;
            Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47;
            Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
            | chr3:8552077-8554730 REVERSE LENGTH=566
          Length = 566

 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 91/127 (71%), Gaps = 2/127 (1%)

Query: 1109 KGILKRNPRGCRGLCTCLNCASFRLHAERAFEYSRNQLLDAEEVAQDLLKELSHLRDMLG 1168
            KGILKR+ RGCRG+C+CLNC+SFRLHAERAFE+SRNQL D E +  DL+ E+SHLRD+L 
Sbjct: 428  KGILKRSMRGCRGICSCLNCSSFRLHAERAFEFSRNQLQDTEVMVLDLVGEISHLRDLLE 487

Query: 1169 RPIDSVNDNPGFDRDQVKEACRKAYAAEQLAKERLSMMKDDLSIHCRITNLQRPRVRFAD 1228
            +   + +  P   + Q  EA ++A  A +LAK RL  M DDL IH RI N QR RV+FA 
Sbjct: 488  KYNSADHSEPY--KSQAGEASKRACEAAELAKSRLHQMNDDLQIHYRIPNEQRARVKFAH 545

Query: 1229 HVQEKII 1235
            ++ EK I
Sbjct: 546  YIHEKTI 552