Miyakogusa Predicted Gene

Lj4g3v2578170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2578170.1 Non Chatacterized Hit- tr|I1JTI8|I1JTI8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.6230
PE=,41.67,1e-16,seg,NULL; Tic22,Tic22-like,CUFF.51169.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23710.1 | Symbols:  | Tic22-like family protein | chr3:85340...   263   8e-71
AT4G33350.1 | Symbols:  | Tic22-like family protein | chr4:16064...   155   3e-38
AT4G33350.2 | Symbols:  | Tic22-like family protein | chr4:16064...   128   5e-30

>AT3G23710.1 | Symbols:  | Tic22-like family protein |
           chr3:8534061-8536148 FORWARD LENGTH=313
          Length = 313

 Score =  263 bits (672), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 130/229 (56%), Positives = 175/229 (76%), Gaps = 9/229 (3%)

Query: 42  WARISQN---TSATTTGPVPAA-----KSSIEQCLEGVPVYALSNAAEEFLLVSGSSTGK 93
           WARIS +     A  T P+  +       +IE+ L GVPVYALSN+ EEF+LVSG+S+GK
Sbjct: 85  WARISDDGGGARAQVTVPIRGSGKGLSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGK 144

Query: 94  NLGLFCFNKDDAEALLHQVTEIDPHIR-QGSKVVPVALNKVFQLKVDGVAFRLIPEFSQV 152
           +LGL    ++DAE LL ++  +DP +R +GSKVV +AL+KVFQLKV+GVAFRLIPE +QV
Sbjct: 145 SLGLLFCKEEDAETLLKEMKSMDPRMRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQV 204

Query: 153 VNALQEMEKSGLPSSDFSGVPVFESRSLMLKSQNKRYRPLFFRKEDLENSLQRAAREQNK 212
            NAL+E + +G+   DF GVPVF+S+SL+L+S+N  YRP+FFRKEDLE SL RA+ +QN+
Sbjct: 205 KNALKERKTAGIDDDDFHGVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNR 264

Query: 213 LNPAIRQGDIQVTALEDLIKEMKEKSTSKWNDVVFIPPGFDVSTDSNQQ 261
           LNPA++ GDIQV   ED++K M+E +TS W+D+VFIPPGF+VST+  Q+
Sbjct: 265 LNPALKPGDIQVAVFEDIVKGMRESTTSNWDDIVFIPPGFEVSTEQTQE 313


>AT4G33350.1 | Symbols:  | Tic22-like family protein |
           chr4:16064638-16066715 REVERSE LENGTH=268
          Length = 268

 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/214 (40%), Positives = 136/214 (63%), Gaps = 17/214 (7%)

Query: 42  WARISQNTSATTTGPVPAAKSSIEQCLEGVPVYALSNAAEEFLLVSGSSTGKNLGLFCFN 101
           +A +SQ+ S T T  +  + S + + L G  V+ +SN   EF+L+S  + GK++GL CF 
Sbjct: 55  FASVSQSKSGTPTTTL--SPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFR 112

Query: 102 KDDAEALLHQVTEIDPHIRQGSKVVPVALNKVFQLKVDGVAFRLIPEFSQVVNALQEMEK 161
           ++DAEA L Q       ++  +KVVP+ L++V+ LKV+G++FR +P+  Q+ NAL E++ 
Sbjct: 113 QEDAEAFLAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-ELKS 171

Query: 162 SGLPSSDFSGVPVFESRSLMLKSQNKRYRPLFFRKEDLENSLQRAAREQNKLNPAIRQGD 221
           SG   + F GVPVF+S  L+++ +N+RY P++F KED+E  L +  R          +GD
Sbjct: 172 SG-NKNGFDGVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRAS--------RGD 222

Query: 222 --IQVTALEDLIK--EMKEKSTSKWNDVVFIPPG 251
             I V +LED+++  EM EK+ S W DV+FIPPG
Sbjct: 223 QQIMVGSLEDVLRKMEMSEKN-SGWEDVIFIPPG 255


>AT4G33350.2 | Symbols:  | Tic22-like family protein |
           chr4:16064638-16066715 REVERSE LENGTH=242
          Length = 242

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 121/212 (57%), Gaps = 39/212 (18%)

Query: 42  WARISQNTSATTTGPVPAAKSSIEQCLEGVPVYALSNAAEEFLLVSGSSTGKNLGLFCFN 101
           +A +SQ+ S T T  +  + S + + L G  V+ +SN   EF+L+S  + GK++GL CF 
Sbjct: 55  FASVSQSKSGTPTTTL--SPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFR 112

Query: 102 KDDAEALLHQVTEIDPHIRQGSKVVPVALNKVFQLKVDGVAFRLIPEFSQVVNALQEMEK 161
           ++DAEA L Q       ++  +KVVP+ L++V+ LKV+G++FR +P+  Q+ NAL E++ 
Sbjct: 113 QEDAEAFLAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-ELKS 171

Query: 162 SGLPSSDFSGVPVFESRSLMLKSQNKRYRPLFFRKEDLENSLQRAAREQNKLNPAIRQGD 221
           SG   + F GVPVF+S  L+++ +N+RY P                              
Sbjct: 172 SG-NKNGFDGVPVFQSELLVVRKKNRRYCP------------------------------ 200

Query: 222 IQVTALEDLIK--EMKEKSTSKWNDVVFIPPG 251
             V +LED+++  EM EK+ S W DV+FIPPG
Sbjct: 201 --VGSLEDVLRKMEMSEKN-SGWEDVIFIPPG 229