Miyakogusa Predicted Gene
- Lj4g3v2577130.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2577130.2 Non Chatacterized Hit- tr|I1KS50|I1KS50_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,55.12,0,seg,NULL;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2,CUFF.51163.2
(1019 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14200.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 90 8e-18
>AT4G14200.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:8185524-8188667 REVERSE
LENGTH=784
Length = 784
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 64/112 (57%), Gaps = 22/112 (19%)
Query: 20 HVCRKCGWPFPNPHPSAKHRRAHKKICGTIEGYKLVGSD---------DEHVSDDDFKTP 70
HVC KCGW + NPHPSAK+RRAHKKICGTI+G+++ S+ +EH DD+ K P
Sbjct: 17 HVCTKCGWSYSNPHPSAKNRRAHKKICGTIKGFEIFDSEMKKENLDLPEEHSLDDEQKPP 76
Query: 71 G---LVASGSSSIALDLVNNEKGNDGIGEKLVRSERSEDDVFSDAVAEFMDS 119
V S+ ++ NE+ D SE+DVF+DAV EF S
Sbjct: 77 TPSPTVVEKSAPTVVEKAANERIGD----------VSEEDVFTDAVCEFSRS 118
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 821 ADKSYLNIPKAEAASERQQSGKSEMLEPPSFMTLVESSHVVSLKGAAASEVQKSQQPDST 880
A +Y +P +++ + G+ + L +LV S V + ASE + P S
Sbjct: 607 AHNNYAEVPVTIESNDHRDFGRLQNLSEAHIRSLVSSPLVTRNNTSNASE--SNLGPVSG 664
Query: 881 SQAGWFPTQTQVNNESQGRKKNEEIIAKVTNWRSNSKGHTPLKSLLGEAANXXXXXXXXX 940
AG VN + + E + K T+W + + H PLK+LL EA +
Sbjct: 665 LSAG-------VNKQEDASQNQEITLEKTTSWGTAKEQHVPLKNLLSEARSPRLQQ---- 713
Query: 941 XXXXXVTQKNGNNGSGLKTVNSILGPE-SP--GDQVVKGDAAKEWNSPARYPAGIKREKS 997
Q + + + V+SILG E SP G K + ++EWNSPA+YP +KRE+
Sbjct: 714 -------QAKDHESNNIPRVSSILGQETSPEDGHWPEKREVSEEWNSPAKYPVDLKREEK 766
Query: 998 KIKSRPFWIQLVCCSSV 1014
K+K RPFW+ VCCS+V
Sbjct: 767 KVKGRPFWVPFVCCSNV 783