Miyakogusa Predicted Gene

Lj4g3v2577130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2577130.1 Non Chatacterized Hit- tr|Q8W4K0|Q8W4K0_ARATH
Putative uncharacterized protein At4g14190
OS=Arabidop,32.99,4e-16,seg,NULL,CUFF.51163.1
         (669 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14200.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   3e-17

>AT4G14200.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8185524-8188667 REVERSE
           LENGTH=784
          Length = 784

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 23/197 (11%)

Query: 471 ADKSYLNIPKAEAASERQQSGKSEMLEPPSFMTLVESSHVVSLKGAAASEVQKSQQPDST 530
           A  +Y  +P    +++ +  G+ + L      +LV S  V     + ASE   +  P S 
Sbjct: 607 AHNNYAEVPVTIESNDHRDFGRLQNLSEAHIRSLVSSPLVTRNNTSNASE--SNLGPVSG 664

Query: 531 SQAGWFPTQTQVNNESQGRKKNEEIIAKVTNWRSNSKGHTPLKSLLGEAANXXXXXXXXX 590
             AG       VN +    +  E  + K T+W +  + H PLK+LL EA +         
Sbjct: 665 LSAG-------VNKQEDASQNQEITLEKTTSWGTAKEQHVPLKNLLSEARSPRLQQ---- 713

Query: 591 XXXXXVTQKNGNNGSGLKTVNSILGPE-SP--GDQVVKGDAAKEWNSPARYPAGIKREKS 647
                  Q   +  + +  V+SILG E SP  G    K + ++EWNSPA+YP  +KRE+ 
Sbjct: 714 -------QAKDHESNNIPRVSSILGQETSPEDGHWPEKREVSEEWNSPAKYPVDLKREEK 766

Query: 648 KIKSRPFWIQLVCCSSV 664
           K+K RPFW+  VCCS+V
Sbjct: 767 KVKGRPFWVPFVCCSNV 783