Miyakogusa Predicted Gene

Lj4g3v2577120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2577120.1 Non Chatacterized Hit- tr|A5XEM2|A5XEM2_MEDTR
Putative RNA binding protein OS=Medicago truncatula GN,52.54,0,ARM
repeat,Armadillo-type fold; IMPORTIN-5 (IMPORTIN SUBUNIT BETA-3),NULL;
IMPORTIN BETA,NULL; HEAT_,CUFF.51162.1
         (493 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19820.1 | Symbols: emb2734 | ARM repeat superfamily protein ...   411   e-115
AT4G27640.1 | Symbols:  | ARM repeat superfamily protein | chr4:...   124   2e-28

>AT5G19820.1 | Symbols: emb2734 | ARM repeat superfamily protein |
           chr5:6695731-6701247 REVERSE LENGTH=1116
          Length = 1116

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/492 (46%), Positives = 315/492 (64%), Gaps = 27/492 (5%)

Query: 12  QVQLIYSNDPTHTETLITNLTSSSNHHRSQAETLLNHLGFHFLP-----RIAKFLRLSPN 66
           Q+ ++  +D    ETLI++L SSSN  RS AE+L N L     P     ++A  L+LSP+
Sbjct: 12  QLAMVLGSDSAPFETLISHLMSSSNEQRSSAESLFN-LAKQSNPDTLSLKLAHLLQLSPH 70

Query: 67  PTTRTMCALLLRNLMLTH----WPQVYAVPRSTICHLLAYSLHMESDPSIARKICDTASD 122
           P  R M A+LLR L+       WP++    +S++   + Y +  E   SI++KICDT S+
Sbjct: 71  PEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKSSMLYCIQHEEAKSISKKICDTVSE 130

Query: 123 LAAIIILPYSYARSSDLLYWPSFIRFFNSGVALADQRLKQMCLRIFARVPQNVREFLLPD 182
           LA+ I LP +         WP  + F    V     +L++    I A++ Q V E L P 
Sbjct: 131 LASGI-LPENG--------WPELLPFVFQCVTSVTPKLQESAFLILAQLSQYVGETLTPH 181

Query: 183 STSRHDFLAGSLAAPNCF-DVRVTAVAAAVNFLQCLPNLSEQDRFEDLLPLMMSTFTDVL 241
               H      L++ +   DV++ A+ A ++F+QCL N +E+DRF+D+LP M+ T T+ L
Sbjct: 182 IKELHGVFLQCLSSNSASSDVKIAALNAVISFVQCLANSTERDRFQDVLPAMIRTLTESL 241

Query: 242 VSGHEAAVQDSLKLFIELAENWPRLLEKQVTNMVESMLEVAEDESLEEGTCHLALEFVMT 301
            +G+EA  Q++L+L IELA   PR L +Q+ ++V SML++AE +SLEE T HLA+EF++T
Sbjct: 242 NNGNEATAQEALELLIELAGTEPRFLRRQLVDIVGSMLQIAEADSLEESTRHLAIEFLVT 301

Query: 302 LSETGERAPEVMRKMLQFVQRLLLVAMKLLLDIGGDLV-------EAEAEGTNNYEYGQE 354
           L+E  ERAP ++RK+ QF+ RL  V MK+L DI  D         + +A  T+NY  GQE
Sbjct: 302 LAEARERAPGMVRKLPQFIDRLFAVLMKMLEDIEDDPAWYSAETEDEDAGETSNYSMGQE 361

Query: 355 CLYRLSVYFGGSAIVPIVSELLPTYLAASEWKKRHAALIALAQIADGCSDEMIKNMDHVL 414
           CL RL++  GG+ IVP+  +    YLAASEW+K HA+LIALAQIA+GCS  MIKN+D V+
Sbjct: 362 CLDRLAISLGGNTIVPVAYQQFSAYLAASEWQKHHASLIALAQIAEGCSKVMIKNLDQVV 421

Query: 415 SMVLDSFHDPHARVRWAAVNAIRQWSTDLGPDLQVKYHHLVLPALAGAIDDSQNPRLQAY 474
           SMVL  F  PH RVRWAA+NAI Q STDLGPDLQ ++H  VLPALA A+DD QNPR+QA+
Sbjct: 422 SMVLSQFQSPHPRVRWAAINAIGQLSTDLGPDLQNQHHERVLPALAAAMDDFQNPRVQAH 481

Query: 475 AASAVSIFAENC 486
           AASAV  F+ENC
Sbjct: 482 AASAVLNFSENC 493


>AT4G27640.1 | Symbols:  | ARM repeat superfamily protein |
           chr4:13798013-13802976 REVERSE LENGTH=1048
          Length = 1048

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 210/464 (45%), Gaps = 23/464 (4%)

Query: 25  ETLITNLTSSSNHHRSQAETLLNHLGF--HFLPRIAKFLRLSPNPTTRTMCALLLRNLML 82
           E L+       N  R QAE  +  L      +P + + LR +  P  R + A+LLR  + 
Sbjct: 6   ELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKRIT 65

Query: 83  THWPQVYAVPRSTICHLLAYSLHMESDPSIARKICDTASDLAAIIILPYSYARSSDLLYW 142
            HW ++    +  +   L  S+ +E+ P + R   +  S     ++  Y+         W
Sbjct: 66  GHWAKLSPQLKQHVKQSLIESITVENSPPVRRASANVVS-----VVAKYAVPAGE----W 116

Query: 143 PSFIRFFNSGVALADQRLKQMCLRIFARVPQNVREFLLPDSTSRHDFLAGSLAAPNCFDV 202
           P  + F       A +  +++ L +F+ + + +     P        L   +   +   V
Sbjct: 117 PDLLTFLFQCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESSSRV 176

Query: 203 RVTAVAAAVNFLQCLPNLSEQDRFEDLLPLMMSTFTDVLVSGHEAAVQDSLKLFIELAEN 262
           RV A+ A  +FL+   +  E  +F D +P ++      + SG E     + ++F EL E+
Sbjct: 177 RVAALKAVGSFLEFTNDGDEVVKFRDFIPSILDVSRKCIASGEEDVAILAFEIFDELIES 236

Query: 263 WPRLLEKQVTNMVESMLEVAEDESLEEGTCHLALEFVMTLSETGERAPEVMRKMLQFVQR 322
              LL   V  +V+  LEV+ +++LE  T H A++ V  L++    + +  + ++  +Q 
Sbjct: 237 PAPLLGDSVKAIVQFSLEVSCNQNLESSTRHQAIQIVSWLAKYKYNSLKKHKLVIPILQV 296

Query: 323 LL-LVAMKLLLDIGGDLVEAEAEGTNNYEYGQECLYRLSVYFGGSAIVPIVSELLPTYLA 381
           +  L+A     +   DL    A          E +  L++       +P++ E    +  
Sbjct: 297 MCPLLAESSDQEDDDDLAPDRASA--------EVIDTLAMNLPKHVFLPVL-EFASVHCQ 347

Query: 382 ASEWKKRHAALIALAQIADGCSDEMIKNMDHVLSMVLDSFHDPHARVRWAAVNAIRQWST 441
           ++  K R A++ AL  I++GC D M + +D VL++VL +  DP   VR AA  AI Q++ 
Sbjct: 348 STNLKFREASVTALGVISEGCFDLMKEKLDTVLNIVLGALRDPELVVRGAASFAIGQFAE 407

Query: 442 DLGPDLQVKYHHLVLPALAGAIDDSQNPRLQAYAASAVSIFAEN 485
            L P++ + ++  VLP L  AI+D+    ++  +  A++ F EN
Sbjct: 408 HLQPEI-LSHYQSVLPCLLIAIEDTSE-EVKEKSHYALAAFCEN 449