Miyakogusa Predicted Gene

Lj4g3v2576090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2576090.1 tr|G7JBC0|G7JBC0_MEDTR Protein transport protein
Sec23 OS=Medicago truncatula GN=MTR_3g084740 PE=4
S,74.3,0,vWA-like,NULL; Zn-finger domain of Sec23/24,Zinc finger,
Sec23/Sec24-type; beta-sandwich domain of S,TC62100.path2.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05520.1 | Symbols:  | Sec23/Sec24 protein transport family p...   311   3e-85
AT3G23660.2 | Symbols:  | Sec23/Sec24 protein transport family p...   293   6e-80
AT3G23660.1 | Symbols:  | Sec23/Sec24 protein transport family p...   293   6e-80
AT4G14160.1 | Symbols:  | Sec23/Sec24 protein transport family p...   268   2e-72
AT4G14160.2 | Symbols:  | Sec23/Sec24 protein transport family p...   268   2e-72
AT4G14160.3 | Symbols:  | Sec23/Sec24 protein transport family p...   267   5e-72
AT2G21630.1 | Symbols:  | Sec23/Sec24 protein transport family p...   188   2e-48
AT5G43670.1 | Symbols:  | Sec23/Sec24 protein transport family p...   157   3e-39
AT3G07100.1 | Symbols: ERMO2, SEC24A | Sec23/Sec24 protein trans...    50   9e-07

>AT1G05520.1 | Symbols:  | Sec23/Sec24 protein transport family
           protein | chr1:1631126-1635703 REVERSE LENGTH=783
          Length = 783

 Score =  311 bits (796), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 149/230 (64%), Positives = 174/230 (75%), Gaps = 20/230 (8%)

Query: 1   MAHLA--DPEGIDGVRMTWNVWPGSKVEASKCVIPLAATIPVTIPHHYHHDIPTVPYTPL 58
           M+ +A  DPEGIDGVRMTWNVWP +KVEASKCVIP+AA I    P  YH DIP+V Y PL
Sbjct: 1   MSEMASMDPEGIDGVRMTWNVWPRTKVEASKCVIPVAACIS---PIRYHRDIPSVEYAPL 57

Query: 59  RCKSCSSLLNPFCIVDFTAKIWICPFCFSRNTFPPHYAQISPTNLPAELYPQYTTLQYTI 118
           RC+ C++ LNPF  VDF AKIWICP CF RN FPPHY  +S TN+P ELYPQYTT++YT+
Sbjct: 58  RCRICTAALNPFARVDFLAKIWICPICFQRNHFPPHYHVMSETNVPCELYPQYTTVEYTL 117

Query: 119 PNPNP---------------NPQPHVFLFLLDTCIIPEEMDYVKSALQRAIGLLPDNALV 163
           PNP+                 P P VF+F+LDTC+I EE  Y KSAL++AIGLLP+NALV
Sbjct: 118 PNPSQPTGVGNFDQTGAVSGQPSPSVFVFVLDTCMIEEEFGYAKSALKQAIGLLPENALV 177

Query: 164 GFISFGTQVQVHELAFSDMSKVYVFRGNKEITKDQVLEQLGLGGSGVARP 213
           GF+SFGTQ  VHEL FSD++KVYVFRG+KEI+KDQVLEQLGLG SG   P
Sbjct: 178 GFVSFGTQAHVHELGFSDLTKVYVFRGDKEISKDQVLEQLGLGASGRRNP 227


>AT3G23660.2 | Symbols:  | Sec23/Sec24 protein transport family
           protein | chr3:8513666-8517729 REVERSE LENGTH=791
          Length = 791

 Score =  293 bits (750), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 167/208 (80%), Gaps = 9/208 (4%)

Query: 1   MAHLA--DPEGIDGVRMTWNVWPGSKVEASKCVIPLAATIPVTIPHHYHHDIPTVPYTPL 58
           MA  A  D EGIDGVRMTWNVWP SK EASKCVIPLAA I    P   H DIPT+PY PL
Sbjct: 1   MAETANTDLEGIDGVRMTWNVWPHSKAEASKCVIPLAACIS---PIRRHADIPTLPYAPL 57

Query: 59  RCKSCSSLLNPFCIVDFTAKIWICPFCFSRNTFPPHYAQISPTNLPAELYPQYTTLQYTI 118
           RC++CS+ LN +  VDFTAK+WICPFC+ RN FPPHY  IS TNLP ELYPQYTT++YT+
Sbjct: 58  RCRTCSAALNAYAQVDFTAKLWICPFCYQRNHFPPHYHVISETNLPGELYPQYTTVEYTL 117

Query: 119 PNPNPNPQ----PHVFLFLLDTCIIPEEMDYVKSALQRAIGLLPDNALVGFISFGTQVQV 174
           P P  N +    P VF+F+LDTC+I EE+D+ KSAL++AIGLLP+NALVGF+SFGTQ  V
Sbjct: 118 PPPVANGEGLVDPPVFVFVLDTCMIEEELDFAKSALKQAIGLLPENALVGFVSFGTQAHV 177

Query: 175 HELAFSDMSKVYVFRGNKEITKDQVLEQ 202
           HEL FS+MSKV+VF+G+KEI+KDQ+L+Q
Sbjct: 178 HELGFSEMSKVFVFKGDKEISKDQILDQ 205


>AT3G23660.1 | Symbols:  | Sec23/Sec24 protein transport family
           protein | chr3:8513666-8517729 REVERSE LENGTH=765
          Length = 765

 Score =  293 bits (750), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 167/208 (80%), Gaps = 9/208 (4%)

Query: 1   MAHLA--DPEGIDGVRMTWNVWPGSKVEASKCVIPLAATIPVTIPHHYHHDIPTVPYTPL 58
           MA  A  D EGIDGVRMTWNVWP SK EASKCVIPLAA I    P   H DIPT+PY PL
Sbjct: 1   MAETANTDLEGIDGVRMTWNVWPHSKAEASKCVIPLAACIS---PIRRHADIPTLPYAPL 57

Query: 59  RCKSCSSLLNPFCIVDFTAKIWICPFCFSRNTFPPHYAQISPTNLPAELYPQYTTLQYTI 118
           RC++CS+ LN +  VDFTAK+WICPFC+ RN FPPHY  IS TNLP ELYPQYTT++YT+
Sbjct: 58  RCRTCSAALNAYAQVDFTAKLWICPFCYQRNHFPPHYHVISETNLPGELYPQYTTVEYTL 117

Query: 119 PNPNPNPQ----PHVFLFLLDTCIIPEEMDYVKSALQRAIGLLPDNALVGFISFGTQVQV 174
           P P  N +    P VF+F+LDTC+I EE+D+ KSAL++AIGLLP+NALVGF+SFGTQ  V
Sbjct: 118 PPPVANGEGLVDPPVFVFVLDTCMIEEELDFAKSALKQAIGLLPENALVGFVSFGTQAHV 177

Query: 175 HELAFSDMSKVYVFRGNKEITKDQVLEQ 202
           HEL FS+MSKV+VF+G+KEI+KDQ+L+Q
Sbjct: 178 HELGFSEMSKVFVFKGDKEISKDQILDQ 205


>AT4G14160.1 | Symbols:  | Sec23/Sec24 protein transport family
           protein | chr4:8167574-8173026 FORWARD LENGTH=773
          Length = 773

 Score =  268 bits (685), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 158/222 (71%), Gaps = 12/222 (5%)

Query: 1   MAHLADP--------EGIDGVRMTWNVWPGSKVEASKCVIPLAATIPVTIPHHYHHDIPT 52
           MA +AD         EGIDGVRMTWN+WP +KVEASKCVIPLAA+I    P   H  I  
Sbjct: 1   MAEMADKAKVEEMDWEGIDGVRMTWNLWPRTKVEASKCVIPLAASIS---PIRRHPLILD 57

Query: 53  VPYTPLRCKSCSSLLNPFCIVDFTAKIWICPFCFSRNTFPPHYAQISPTNLPAELYPQYT 112
           +PY PL CK+C +LLN F  VDF A  W+CPFC+ RN FP HY  IS  NLP ELYPQYT
Sbjct: 58  LPYAPLDCKTCKALLNAFARVDFAAMNWVCPFCYHRNHFPSHYHSISEINLPGELYPQYT 117

Query: 113 TLQYTIPNPNPNPQPHVFLFL-LDTCIIPEEMDYVKSALQRAIGLLPDNALVGFISFGTQ 171
           T++YT+P       P       LDTC+I EE+ Y KSAL++AIGLLP+NALVGF+SFGTQ
Sbjct: 118 TVEYTLPPDPSRVPPPPVFVFVLDTCMIEEELGYAKSALKQAIGLLPENALVGFVSFGTQ 177

Query: 172 VQVHELAFSDMSKVYVFRGNKEITKDQVLEQLGLGGSGVARP 213
             VHEL FS+MSKV+VF+GNKE+TKDQ+L+QLGLG S    P
Sbjct: 178 AHVHELGFSEMSKVFVFKGNKEVTKDQILDQLGLGSSSRRAP 219


>AT4G14160.2 | Symbols:  | Sec23/Sec24 protein transport family
           protein | chr4:8167574-8173026 FORWARD LENGTH=772
          Length = 772

 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 158/222 (71%), Gaps = 12/222 (5%)

Query: 1   MAHLADP--------EGIDGVRMTWNVWPGSKVEASKCVIPLAATIPVTIPHHYHHDIPT 52
           MA +AD         EGIDGVRMTWN+WP +KVEASKCVIPLAA+I    P   H  I  
Sbjct: 1   MAEMADKAKVEEMDWEGIDGVRMTWNLWPRTKVEASKCVIPLAASIS---PIRRHPLILD 57

Query: 53  VPYTPLRCKSCSSLLNPFCIVDFTAKIWICPFCFSRNTFPPHYAQISPTNLPAELYPQYT 112
           +PY PL CK+C +LLN F  VDF A  W+CPFC+ RN FP HY  IS  NLP ELYPQYT
Sbjct: 58  LPYAPLDCKTCKALLNAFARVDFAAMNWVCPFCYHRNHFPSHYHSISEINLPGELYPQYT 117

Query: 113 TLQYTIPNPNPNPQPHVFLFL-LDTCIIPEEMDYVKSALQRAIGLLPDNALVGFISFGTQ 171
           T++YT+P       P       LDTC+I EE+ Y KSAL++AIGLLP+NALVGF+SFGTQ
Sbjct: 118 TVEYTLPPDPSRVPPPPVFVFVLDTCMIEEELGYAKSALKQAIGLLPENALVGFVSFGTQ 177

Query: 172 VQVHELAFSDMSKVYVFRGNKEITKDQVLEQLGLGGSGVARP 213
             VHEL FS+MSKV+VF+GNKE+TKDQ+L+QLGLG S    P
Sbjct: 178 AHVHELGFSEMSKVFVFKGNKEVTKDQILDQLGLGSSSRRAP 219


>AT4G14160.3 | Symbols:  | Sec23/Sec24 protein transport family
           protein | chr4:8167574-8172266 FORWARD LENGTH=620
          Length = 620

 Score =  267 bits (682), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 158/222 (71%), Gaps = 12/222 (5%)

Query: 1   MAHLADP--------EGIDGVRMTWNVWPGSKVEASKCVIPLAATIPVTIPHHYHHDIPT 52
           MA +AD         EGIDGVRMTWN+WP +KVEASKCVIPLAA+I    P   H  I  
Sbjct: 1   MAEMADKAKVEEMDWEGIDGVRMTWNLWPRTKVEASKCVIPLAASIS---PIRRHPLILD 57

Query: 53  VPYTPLRCKSCSSLLNPFCIVDFTAKIWICPFCFSRNTFPPHYAQISPTNLPAELYPQYT 112
           +PY PL CK+C +LLN F  VDF A  W+CPFC+ RN FP HY  IS  NLP ELYPQYT
Sbjct: 58  LPYAPLDCKTCKALLNAFARVDFAAMNWVCPFCYHRNHFPSHYHSISEINLPGELYPQYT 117

Query: 113 TLQYTIPNPNPNPQPHVFLFL-LDTCIIPEEMDYVKSALQRAIGLLPDNALVGFISFGTQ 171
           T++YT+P       P       LDTC+I EE+ Y KSAL++AIGLLP+NALVGF+SFGTQ
Sbjct: 118 TVEYTLPPDPSRVPPPPVFVFVLDTCMIEEELGYAKSALKQAIGLLPENALVGFVSFGTQ 177

Query: 172 VQVHELAFSDMSKVYVFRGNKEITKDQVLEQLGLGGSGVARP 213
             VHEL FS+MSKV+VF+GNKE+TKDQ+L+QLGLG S    P
Sbjct: 178 AHVHELGFSEMSKVFVFKGNKEVTKDQILDQLGLGSSSRRAP 219


>AT2G21630.1 | Symbols:  | Sec23/Sec24 protein transport family
           protein | chr2:9250346-9253829 FORWARD LENGTH=761
          Length = 761

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 140/207 (67%), Gaps = 5/207 (2%)

Query: 1   MAHLADPEGIDGVRMTWNVWP-GSKVEAS-KCVIPLAATIPVTIPHHYHHDIPTVPYTPL 58
           MA   + E  DGVRM WN+ P  +K E S    +P++A      P      +  +PY+PL
Sbjct: 1   MAEFGELEAQDGVRMPWNIIPVATKKEQSIDSEVPVSAIYTPLKPLRSQSLL--LPYSPL 58

Query: 59  RCKSCSSLLNPFCIVDFTAKIWICPFCFSRNTFPPHYAQISPTNLPAELYPQYTTLQYTI 118
           RC++C S+LNP+ +VDF+A  W CPFCF+RN FP +Y+ ++  NLP EL+P  TT++Y +
Sbjct: 59  RCRTCRSVLNPYSVVDFSACNWGCPFCFNRNPFPLNYSSVADNNLPPELFPHSTTVEY-L 117

Query: 119 PNPNPNPQPHVFLFLLDTCIIPEEMDYVKSALQRAIGLLPDNALVGFISFGTQVQVHELA 178
            +   +P P VFLF++DTC+I EE+D++KS+L +A+ LLPD +++G I+F + V+V+EL 
Sbjct: 118 CDSFSSPSPPVFLFVVDTCLISEELDFLKSSLFQALDLLPDTSILGLITFDSLVRVYELG 177

Query: 179 FSDMSKVYVFRGNKEITKDQVLEQLGL 205
           F   +K Y F GNK+ TKDQ+L+QL  
Sbjct: 178 FPHCTKSYFFHGNKDCTKDQLLDQLSF 204


>AT5G43670.1 | Symbols:  | Sec23/Sec24 protein transport family
           protein | chr5:17539025-17541733 REVERSE LENGTH=794
          Length = 794

 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 132/250 (52%), Gaps = 55/250 (22%)

Query: 8   EGIDGVRMTWNVWPGSKVEASKCVIPLAATIPVTIPHHYHHDIPTVPYTPLRCKSCSSLL 67
           E I+G+R +WN WP +K +    V+PL+    +  P  +  ++PT+PY PL C  C ++L
Sbjct: 7   EAIEGLRWSWNSWPTTKSDCESLVVPLSI---MYTPLMHFSELPTIPYDPLICSRCGAVL 63

Query: 68  NPFCIVDFTAKIWICPFCFSRNTFPPHYAQISPTNLPAELYPQYTTLQYTIPNPNPNPQP 127
           NP+  VD+ ++IW CPFCF +N FP  Y+ I+ TNLPAEL+P Y+ ++Y+   P P+ Q 
Sbjct: 64  NPYARVDYQSRIWSCPFCFHKNLFPRSYSGITETNLPAELFPTYSAVEYS---PLPSRQS 120

Query: 128 H-------------------------------------------------VFLFLLDTCI 138
                                                              F+F++D  +
Sbjct: 121 GSNTTTPTAAASWSNGFNQGVRSMPSNSSFSSLASSTVGGGGGVISELGPAFVFVVDASM 180

Query: 139 IPEEMDYVKSALQRAIGLLPDNALVGFISFGTQVQVHELAFSDMSKVYVFRGNKEITKDQ 198
           + +E+  V+S +   I  LP+N LV  I+F + V+V++L FS+ SKV VF G ++++ DQ
Sbjct: 181 VEDELRAVRSDVLFVIEQLPENCLVALITFDSMVRVYDLGFSECSKVVVFHGERDLSPDQ 240

Query: 199 VLEQLGLGGS 208
           + + LGLG S
Sbjct: 241 IQQFLGLGYS 250


>AT3G07100.1 | Symbols: ERMO2, SEC24A | Sec23/Sec24 protein
           transport family protein | chr3:2245689-2250077 REVERSE
           LENGTH=1038
          Length = 1038

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 15/183 (8%)

Query: 13  VRMTWNVWPGSKVEASKCVIPLAATIPVTIPHHYHHDIPTVPYTP---LRCKSCSSLLNP 69
           +R+T +  P S+  AS+  +PL A +          ++P + +     +RC+ C + +NP
Sbjct: 321 LRLTTSAIPNSQSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRRCRTYVNP 380

Query: 70  FCIVDFTAKIWICPFCFSRNTFPPHY---AQISPTNLPAELYPQYTTLQYTIPNPNPN-- 124
           F     + + W C  C   N  P  Y      +   +  +  P+ T     I  P     
Sbjct: 381 FVTFTDSGRKWRCNICSMLNDVPGEYFSHLDATGRRMDMDQRPELTKGSVEIIAPTEYMV 440

Query: 125 --PQPHVFLFLLDTCIIPEE---MDYVKSALQRAIGLLPD--NALVGFISFGTQVQVHEL 177
             P P ++ FL+D  I   +   ++ V   ++  +  LP      +GFI++ + +  + +
Sbjct: 441 RPPMPPIYFFLIDVSISATKSGMLEVVAQTIKSCLDNLPGYPRTQIGFITYDSTLHFYNM 500

Query: 178 AFS 180
             S
Sbjct: 501 KSS 503