Miyakogusa Predicted Gene

Lj4g3v2573940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2573940.1 Non Chatacterized Hit- tr|I1K3P5|I1K3P5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.3,2e-38,Sm-like
ribonucleoproteins,Like-Sm (LSM) domain; snRNP Sm
proteins,Ribonucleoprotein LSM domain, euk,CUFF.51149.1
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03870.1 | Symbols:  | Small nuclear ribonucleoprotein family...   166   3e-42
AT2G03870.2 | Symbols:  | Small nuclear ribonucleoprotein family...   166   3e-42
AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonucl...    58   1e-09
AT3G11500.1 | Symbols:  | Small nuclear ribonucleoprotein family...    56   4e-09
AT2G23930.2 | Symbols: SNRNP-G | probable small nuclear ribonucl...    51   2e-07

>AT2G03870.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:1180306-1181256 FORWARD LENGTH=99
          Length = 99

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/94 (90%), Positives = 87/94 (92%), Gaps = 1/94 (1%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQI 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPL+ 
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRHLGFIVCRGTAVMLVSPTDGTEVIVDNPF 94
          TDQTR LG IVCRGTAVMLVSPTDGTE I  NPF
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIA-NPF 93


>AT2G03870.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:1180306-1181256 FORWARD LENGTH=99
          Length = 99

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/94 (90%), Positives = 87/94 (92%), Gaps = 1/94 (1%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQI 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPL+ 
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRHLGFIVCRGTAVMLVSPTDGTEVIVDNPF 94
          TDQTR LG IVCRGTAVMLVSPTDGTE I  NPF
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIA-NPF 93


>AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear
          ribonucleoprotein G | chr2:10182353-10183026 FORWARD
          LENGTH=80
          Length = 80

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 9/71 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQITDQTRHLGF 69
          DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G 
Sbjct: 9  DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 59

Query: 70 IVCRGTAVMLV 80
          +V RG +++ V
Sbjct: 60 VVIRGNSIVTV 70


>AT3G11500.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:3621626-3622474 REVERSE LENGTH=79
          Length = 79

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 9/71 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQITDQTRHLGF 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE   D        D+T  +G 
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGD--------DKT-DIGM 59

Query: 70 IVCRGTAVMLV 80
          +V RG +++ V
Sbjct: 60 VVIRGNSIVTV 70


>AT2G23930.2 | Symbols: SNRNP-G | probable small nuclear
          ribonucleoprotein G | chr2:10182496-10183026 FORWARD
          LENGTH=67
          Length = 67

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 15 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQITDQTRHLGFIVCRG 74
          +DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G +V RG
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGMVVIRG 51

Query: 75 TAVMLVSP 82
           +++ V  
Sbjct: 52 NSIVTVEA 59