Miyakogusa Predicted Gene

Lj4g3v2573930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2573930.1 Non Chatacterized Hit- tr|K4AKS9|K4AKS9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si039506,42.45,2e-16,seg,NULL; Forkhead associated
domain,Forkhead-associated (FHA) domain; SMAD/FHA domain,SMAD/FHA
doma,CUFF.51148.1
         (408 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14490.1 | Symbols:  | SMAD/FHA domain-containing protein  | ...   120   2e-27
AT3G02400.1 | Symbols:  | SMAD/FHA domain-containing protein  | ...   115   7e-26

>AT4G14490.1 | Symbols:  | SMAD/FHA domain-containing protein  |
           chr4:8332414-8333574 REVERSE LENGTH=386
          Length = 386

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 77/107 (71%), Gaps = 2/107 (1%)

Query: 1   MEPPSLTLRILQGPPHCKGQTHNFKPGSAIRIGRVIRGNTLPIKDPGISSKHLNILTESG 60
           M  PSL L  ++GP    G   ++KPGS IR+GR++RGN + IKD GIS+KHL I ++SG
Sbjct: 1   MVTPSLRLVFVKGPRE--GDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSG 58

Query: 61  QWVLRDLDTSNGTVLNGSNVLPQTAFPLHDGSTIKIGELTSILVNLL 107
            WV++DL +SNGT+LN + + P+T+  L DG  IK+GE TSILVN +
Sbjct: 59  NWVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFV 105



 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%)

Query: 352 DLEKLSLGEWFDFLEVHLPKQIVDATEEMFGSMRQKAERLREYIIMQK 399
           DL K++LG  F FLE HL K+I+  TE M   MR K +R+REYI  Q+
Sbjct: 330 DLRKMTLGALFSFLEGHLSKEIIHKTENMIEPMRSKTQRVREYISDQR 377


>AT3G02400.1 | Symbols:  | SMAD/FHA domain-containing protein  |
           chr3:489830-491587 FORWARD LENGTH=585
          Length = 585

 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 1   MEPPSLTLRILQGPPHCKGQTHNFKPGSAIRIGRVIRGNTLPIKDPGISSKHLNILTESG 60
           M PP L L   QGP    G +  FKPGS IRIGR++RGN + IKD GIS+KHL I+++S 
Sbjct: 1   MVPPLLKLDFTQGPRA--GDSLGFKPGSTIRIGRIVRGNEIAIKDAGISTKHLRIVSDSE 58

Query: 61  QWVLRDLDTSNGTVLNGSNVLPQTAFPLHDGSTIKIGELTSILVNLLHPIPTEP 114
            W++ DL +SNGT+LN   +   T   L  G  IK+GE TSILVN    +   P
Sbjct: 59  NWIIHDLGSSNGTILNSDTIDSDTPVNLSHGDEIKLGEYTSILVNFGSDVVQAP 112



 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 33/47 (70%)

Query: 353 LEKLSLGEWFDFLEVHLPKQIVDATEEMFGSMRQKAERLREYIIMQK 399
           LEK+ L EWFD +EV LPKQ ++ TE+M   MR K+ R+ ++I  QK
Sbjct: 535 LEKMKLREWFDAIEVQLPKQTIEETEKMIEPMRSKSMRVHKHIAEQK 581