Miyakogusa Predicted Gene

Lj4g3v2573880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2573880.1 Non Chatacterized Hit- tr|G7LHB2|G7LHB2_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,75.2,0,NnrU,NnrU; seg,NULL,CUFF.51144.1
         (367 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10830.1 | Symbols: Z-ISO, Z-ISO1.1 | 15-cis-zeta-carotene is...   503   e-142
AT1G10830.2 | Symbols: Z-ISO, Z-ISO1.2 | 15-cis-zeta-carotene is...   314   7e-86

>AT1G10830.1 | Symbols: Z-ISO, Z-ISO1.1 | 15-cis-zeta-carotene
           isomerase | chr1:3605736-3607449 REVERSE LENGTH=367
          Length = 367

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 234/305 (76%), Positives = 270/305 (88%), Gaps = 4/305 (1%)

Query: 67  EDKADTADSN----LVVGEDSAVFDLQSQKISSWVYFTVILGVVLFALNVVWIDPSTGFG 122
           ED+   +DS     L++GEDSA F+L  QK+ SWVYF V+LGVVLF LNVVWID STGFG
Sbjct: 63  EDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWIDNSTGFG 122

Query: 123 KDFVDAVSGISDSPEVVMLLLILIFAGVHSGLASFRDTGEKLIGERAFRVLFAGTSLPLA 182
           K F+DAVS IS SPEV ML+LILIFA VHSGLAS RD GEKLIGERAFRVLFAG SLPLA
Sbjct: 123 KSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFAGISLPLA 182

Query: 183 LTTIVYFINHRYDGFQLWQLQNVPGLHQLLWLSNFISFYFLYPSTFNLLEVAAVDKPKLH 242
           ++TIVYFINHRYDG QLWQLQ VPG+H+ +W++NF+SF+FLYPSTFNLLEVAAVDKPK+H
Sbjct: 183 MSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTFNLLEVAAVDKPKMH 242

Query: 243 LWETGIMRITRHPQLVGQVIWCLAHTIWIGNSVAVAASVGLIGHHLFGAWNGDRRLAKRY 302
           LWETGIMRITRHPQ+VGQ++WCLAHT+WIGN+VA +AS+GLI HHLFGAWNGDRRLAKRY
Sbjct: 243 LWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASLGLIAHHLFGAWNGDRRLAKRY 302

Query: 303 GEDFDLVKERTSIVPFAAILDGRQRLPKDFYKEFIRLPYLTITFLTLGAYFAHPLMQSAS 362
           GEDF+ +K+RTS++PFAAI +GRQ LP+D+YKEF+RLPYL IT LT+GAYFAHPLMQ AS
Sbjct: 303 GEDFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPYLAITALTVGAYFAHPLMQGAS 362

Query: 363 FNLHW 367
           F LHW
Sbjct: 363 FRLHW 367


>AT1G10830.2 | Symbols: Z-ISO, Z-ISO1.2 | 15-cis-zeta-carotene
           isomerase | chr1:3606411-3607449 REVERSE LENGTH=285
          Length = 285

 Score =  314 bits (804), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 151/203 (74%), Positives = 173/203 (85%), Gaps = 4/203 (1%)

Query: 67  EDKADTADSN----LVVGEDSAVFDLQSQKISSWVYFTVILGVVLFALNVVWIDPSTGFG 122
           ED+   +DS     L++GEDSA F+L  QK+ SWVYF V+LGVVLF LNVVWID STGFG
Sbjct: 63  EDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWIDNSTGFG 122

Query: 123 KDFVDAVSGISDSPEVVMLLLILIFAGVHSGLASFRDTGEKLIGERAFRVLFAGTSLPLA 182
           K F+DAVS IS SPEV ML+LILIFA VHSGLAS RD GEKLIGERAFRVLFAG SLPLA
Sbjct: 123 KSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFAGISLPLA 182

Query: 183 LTTIVYFINHRYDGFQLWQLQNVPGLHQLLWLSNFISFYFLYPSTFNLLEVAAVDKPKLH 242
           ++TIVYFINHRYDG QLWQLQ VPG+H+ +W++NF+SF+FLYPSTFNLLEVAAVDKPK+H
Sbjct: 183 MSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTFNLLEVAAVDKPKMH 242

Query: 243 LWETGIMRITRHPQLVGQVIWCL 265
           LWETGIMRITRHPQ++   + CL
Sbjct: 243 LWETGIMRITRHPQVLNISLMCL 265