Miyakogusa Predicted Gene

Lj4g3v2563550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2563550.1 tr|A9RTM1|A9RTM1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_205447,66.18,4e-19,SUBFAMILY NOT NAMED,NULL; STRESS
ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN (SERP1/RAMP4),Endoplasmic
,CUFF.51123.1
         (68 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27330.1 | Symbols:  | Ribosome associated membrane protein R...    95   1e-20
AT1G27350.1 | Symbols:  | Ribosome associated membrane protein R...    95   1e-20

>AT1G27330.1 | Symbols:  | Ribosome associated membrane protein
          RAMP4 | chr1:9493064-9493898 FORWARD LENGTH=68
          Length = 68

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 52/68 (76%)

Query: 1  MTTSRRLADRKVEKFEKNITKRGFVPETTAKKGKDYXXXXXXXXXXXXXXIGSSLFQIIR 60
          MTTS+RLADRK+EKF+KNI KRGFVPETT KKGKDY              IGSSLFQIIR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATSGGLA 68
          TATSGG+A
Sbjct: 61 TATSGGMA 68


>AT1G27350.1 | Symbols:  | Ribosome associated membrane protein
          RAMP4 | chr1:9498319-9499303 REVERSE LENGTH=68
          Length = 68

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 52/68 (76%)

Query: 1  MTTSRRLADRKVEKFEKNITKRGFVPETTAKKGKDYXXXXXXXXXXXXXXIGSSLFQIIR 60
          MTTS+RLADRK+EKF+KNI KRGFVPETT KKGKDY              IGSSLFQIIR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATSGGLA 68
          TATSGG+A
Sbjct: 61 TATSGGMA 68