Miyakogusa Predicted Gene
- Lj4g3v2526060.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2526060.2 Non Chatacterized Hit- tr|I1R7U0|I1R7U0_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,31.86,3e-18,Remorin_C,Remorin, C-terminal; seg,NULL;
coiled-coil,NULL; FAMILY NOT NAMED,NULL,CUFF.51093.2
(348 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67590.1 | Symbols: | Remorin family protein | chr1:25333137... 239 2e-63
AT1G67590.2 | Symbols: | Remorin family protein | chr1:25333255... 150 9e-37
AT1G30320.1 | Symbols: | Remorin family protein | chr1:10680348... 90 2e-18
AT2G02170.2 | Symbols: | Remorin family protein | chr2:556595-5... 85 8e-17
AT2G02170.1 | Symbols: | Remorin family protein | chr2:556595-5... 85 8e-17
AT3G57540.1 | Symbols: | Remorin family protein | chr3:21301623... 54 2e-07
AT2G41870.1 | Symbols: | Remorin family protein | chr2:17471119... 54 2e-07
>AT1G67590.1 | Symbols: | Remorin family protein |
chr1:25333137-25334472 REVERSE LENGTH=347
Length = 347
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/345 (42%), Positives = 185/345 (53%), Gaps = 39/345 (11%)
Query: 20 EFQNGKNAARVSNHRHRITNGKPTPSKWDDAQKWL-----VGLXXXXXXXXXXXXXXXXP 74
EFQ G N R NH HR T GKP PSKWDDAQKWL P
Sbjct: 24 EFQKGSN--RTPNH-HRSTMGKPAPSKWDDAQKWLSGVGFARGGGGGGDKSSHHSRSNKP 80
Query: 75 RNSNADDLRLIAPVPQKEQDYSSSEKEEEDQEHDVCHDFITTTTSDDAETNKYVSEHTLV 134
RNSNADDLRLIA Q+E++ E +D+E + T D E+ + E ++
Sbjct: 81 RNSNADDLRLIASASQREREGEDQYVEYDDEEMAAGRPEVETKNVDCGES-VWRKESSIN 139
Query: 135 P---VQSLCFRDMGTEMTPIASQEXXXXXXXXXXXXXXXXXXIHSGTSTPMKGQNGLDNK 191
P ++S+C RDMGTEMTPI SQE S T+TP++ +
Sbjct: 140 PTAVIRSVCVRDMGTEMTPIGSQEP-------------------SRTATPVRATTPVGRS 180
Query: 192 GAAEGGSVSSRGNNGTITRQCCG------GEGSEK--KIEDQAKKLSPLESRAIAWDEAE 243
S RG + + SEK + K +S +E+RA+AWDEAE
Sbjct: 181 PVTSPVRASQRGEAVGVVMETVTEVRRVESNNSEKVNGFVESKKAMSAMEARAMAWDEAE 240
Query: 244 RAKFMARFKREEVKIQAWENHQIXXXXXXXXXXXXXXXXXXXLAQERFTNKLATTKRIAE 303
RAKFMAR+KREEVKIQAWENH+ A+E+ NKLA TKRIAE
Sbjct: 241 RAKFMARYKREEVKIQAWENHEKRKAEMEMKKMEVKAERMKARAEEKLANKLAATKRIAE 300
Query: 304 EKRANAQVELKDQALKTTERVEYIRRTGHVPSSFSFNFKLPSICW 348
E+RANA+ +L ++A+KT+E+ +YIRR+GH+PSSFSF+FKLPS CW
Sbjct: 301 ERRANAEAKLNEKAVKTSEKADYIRRSGHLPSSFSFSFKLPSRCW 345
>AT1G67590.2 | Symbols: | Remorin family protein |
chr1:25333255-25334472 REVERSE LENGTH=308
Length = 308
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 130/262 (49%), Gaps = 39/262 (14%)
Query: 20 EFQNGKNAARVSNHRHRITNGKPTPSKWDDAQKWL-----VGLXXXXXXXXXXXXXXXXP 74
EFQ G N R NH HR T GKP PSKWDDAQKWL P
Sbjct: 24 EFQKGSN--RTPNH-HRSTMGKPAPSKWDDAQKWLSGVGFARGGGGGGDKSSHHSRSNKP 80
Query: 75 RNSNADDLRLIAPVPQKEQDYSSSEKEEEDQEHDVCHDFITTTTSDDAETNKYVSEHTLV 134
RNSNADDLRLIA Q+E++ E +D+E + T D E+ + E ++
Sbjct: 81 RNSNADDLRLIASASQREREGEDQYVEYDDEEMAAGRPEVETKNVDCGES-VWRKESSIN 139
Query: 135 P---VQSLCFRDMGTEMTPIASQEXXXXXXXXXXXXXXXXXXIHSGTSTPMKGQNGLDNK 191
P ++S+C RDMGTEMTPI SQE S T+TP++ +
Sbjct: 140 PTAVIRSVCVRDMGTEMTPIGSQEP-------------------SRTATPVRATTPVGRS 180
Query: 192 GAAEGGSVSSRGNNGTITRQCCG------GEGSEK--KIEDQAKKLSPLESRAIAWDEAE 243
S RG + + SEK + K +S +E+RA+AWDEAE
Sbjct: 181 PVTSPVRASQRGEAVGVVMETVTEVRRVESNNSEKVNGFVESKKAMSAMEARAMAWDEAE 240
Query: 244 RAKFMARFKREEVKIQAWENHQ 265
RAKFMAR+KREEVKIQAWENH+
Sbjct: 241 RAKFMARYKREEVKIQAWENHE 262
>AT1G30320.1 | Symbols: | Remorin family protein |
chr1:10680348-10682852 FORWARD LENGTH=509
Length = 509
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 147/381 (38%), Gaps = 60/381 (15%)
Query: 1 MKYVEDKEIS-NSSAVMHHSEFQNGKNAARVSNHRHRITNGKPTPSKWDDAQKWLVG--- 56
M+ ED+ + +S+A EF + NH R + PSKW+DA+KW++
Sbjct: 134 MRPQEDENLDYDSNASSSSFEFHRARGERSNQNHGSRGYPSRQMPSKWNDAEKWIMSRQN 193
Query: 57 LXXXXXXXXXXXXXXXXPRNS----NADDLRLI-----------------APVPQKEQDY 95
+ P N+ N + L AP P Q+Y
Sbjct: 194 MVMRKNGQGNRIPVRIVPDNAGYEHNKSRMDLCQSSQVDGFEKFPNVVPSAPHPILTQEY 253
Query: 96 SS-SEKEEEDQEHDVCHDFITTTTSDDAETNKYVSEHTLVPVQSLCFRDMGTEMTPIASQ 154
S ++ Q +D+ TT A ++S+C RDMGTEMTPI SQ
Sbjct: 254 GGDSLIDQSTQSNDLADSSHDHTTGGPA-------------IRSVCMRDMGTEMTPIPSQ 300
Query: 155 EXXXXXXXXXXXXXXXXXXIHSGTSTPMKGQNGLDNKGAAEGGSVSSRGNNGTITRQ--C 212
E S STP GQ + +S R+
Sbjct: 301 EPSRSVTPVGATTPLRSP-TSSLPSTPRGGQPEESSMSKNTRRELSEEEEKAKTRREIVA 359
Query: 213 CGGEGSEKKIE-----------------DQAKKLSPLESRAIAWDEAERAKFMARFKREE 255
G + + I ++A+K+ E RA AW+EAE++K AR+KREE
Sbjct: 360 LGVQLGKMNIAAWASKEEEENKKNNGDAEEAQKIE-FEKRATAWEEAEKSKHNARYKREE 418
Query: 256 VKIQAWENHQIXXXXXXXXXXXXXXXXXXXLAQERFTNKLATTKRIAEEKRANAQVELKD 315
++IQAWE+ + A+ + K+A K+ +EEKRA A+
Sbjct: 419 IRIQAWESQEKAKLEAEMRRIEAKVEQMKAEAEAKIMKKIALAKQRSEEKRALAEARKTR 478
Query: 316 QALKTTERVEYIRRTGHVPSS 336
A K +YIR TG +P+S
Sbjct: 479 DAEKAVAEAQYIRETGRIPAS 499
>AT2G02170.2 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 233 ESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXXXXXXXXXXXXXXXXXXXLAQERFT 292
E+RA AW+EAE+AK MARF+REE+KIQAWENHQ AQ+R
Sbjct: 374 EARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQDRLM 433
Query: 293 NKLATTKRIAEEKRANAQVELKDQALKTTERVEYIRRTGHVP----SSFSF 339
KLAT +R AEEKRA A+ + QA KT ++ E IRRTG VP S FSF
Sbjct: 434 KKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCFSF 484
>AT2G02170.1 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 233 ESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXXXXXXXXXXXXXXXXXXXLAQERFT 292
E+RA AW+EAE+AK MARF+REE+KIQAWENHQ AQ+R
Sbjct: 374 EARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQDRLM 433
Query: 293 NKLATTKRIAEEKRANAQVELKDQALKTTERVEYIRRTGHVP----SSFSF 339
KLAT +R AEEKRA A+ + QA KT ++ E IRRTG VP S FSF
Sbjct: 434 KKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCFSF 484
>AT3G57540.1 | Symbols: | Remorin family protein |
chr3:21301623-21302924 REVERSE LENGTH=296
Length = 296
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 225 QAKKLSPLESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXXXXXXXXXXXXXXXXXX 284
Q K +E++ AW A+ AK RFKR++ I W N Q+
Sbjct: 178 QRVKREEVEAKITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIERKLEDRR 237
Query: 285 XLAQERFTNKLATTKRIAEEKRANAQVELKDQALKTTERVEYIRRTGHVPSSFSFNFKL 343
A E+ NK+A +R AEE+RA A+ + + + E +R G P+ SF F L
Sbjct: 238 AKAMEKTQNKVAKAQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPPAKRSF-FSL 295
>AT2G41870.1 | Symbols: | Remorin family protein |
chr2:17471119-17472519 REVERSE LENGTH=274
Length = 274
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%)
Query: 232 LESRAIAWDEAERAKFMARFKREEVKIQAWENHQIXXXXXXXXXXXXXXXXXXXLAQERF 291
+E++ AW A+ AK RFKRE+ I W N Q+ A E+
Sbjct: 163 VEAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAKAMEKT 222
Query: 292 TNKLATTKRIAEEKRANAQVELKDQALKTTERVEYIRRTGHVPSSFSF 339
N +A +R AEE+RA A+ + + K E +R G P+ SF
Sbjct: 223 QNNVAKAQRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPPAKRSF 270