Miyakogusa Predicted Gene

Lj4g3v2513900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2513900.1 Non Chatacterized Hit- tr|I1K3J0|I1K3J0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20253 PE,84.77,0,SIGNAL
RECOGNITION PARTICLE 72,NULL; SIGNAL RECOGNITION PARTICLE 72,Signal
recognition particle, SRP,CUFF.51088.1
         (662 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67680.1 | Symbols:  | SRP72 RNA-binding domain | chr1:253659...   726   0.0  
AT1G67650.1 | Symbols:  | SRP72 RNA-binding domain | chr1:253598...   671   0.0  

>AT1G67680.1 | Symbols:  | SRP72 RNA-binding domain |
           chr1:25365962-25368464 REVERSE LENGTH=664
          Length = 664

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/635 (57%), Positives = 466/635 (73%), Gaps = 18/635 (2%)

Query: 18  LEDLFTTLSRHIQSSAFDHAAKVADQILAVAPGDEDAIRCKVVALIKVDRVED------- 70
           +EDLFT+L +HI+ + ++ A KVADQ+L++ P DEDAIRCKVVALIK D+ +D       
Sbjct: 20  IEDLFTSLHQHIKDTKYEEAVKVADQVLSIVPTDEDAIRCKVVALIKDDKFDDYLIKDVK 79

Query: 71  ---ALSAIHSSKTLPDDFHYLKAYCLYRQNKLDEALESLRKQERDDETMLLESQILYRLG 127
              ALS I+S + LP D  + KAYCLYR NKLDEAL  L+  ERD +T++LE+QILYRLG
Sbjct: 80  INGALSVINSFQKLPIDLGFHKAYCLYRVNKLDEALVCLKGLERDTDTLVLEAQILYRLG 139

Query: 128 KMDACLDIYQKLQKSKIDSLEINSVAAFVMAGRSSDVQGLLDSLRLKATSSFELAYNTAC 187
           K DAC+D+YQKL KS+I++LE+N VA  + AG++S VQ  L+SL++K TSSFELAYNTAC
Sbjct: 140 KADACVDVYQKLTKSQIETLEVNLVAGLISAGKASQVQKTLESLKIKPTSSFELAYNTAC 199

Query: 188 SLIERKKYTDAEQLLLSGRRIGQEVLMEDN--LPDDEIEIELSPLAVQLAYVRQLLGNKQ 245
           SLIE   Y DAEQLLL+ RRIGQE L +D+  L D+EIEIEL+P+AVQLAYV+Q+LG  Q
Sbjct: 200 SLIENNNYADAEQLLLTARRIGQETLNDDDIALTDEEIEIELAPIAVQLAYVQQILGQTQ 259

Query: 246 DAIEAYTDVIKRDMADESSIAVAINNLVSLRGAKDVSDSLRKLDRLKEKDAQNFRLAHGL 305
           ++  +Y D IKR++ADE S+AVA+NNLV+L+G KD+SD LRK D LK+KD+Q F+L+  L
Sbjct: 260 ESTSSYVDFIKRNLADEPSLAVAVNNLVALKGFKDISDGLRKFDLLKDKDSQTFQLSQAL 319

Query: 306 DLKLSSKERETIYANRILLLLHANKLDQARELVSALPDMFPDSVIPVLLQAALLVRENKA 365
           D KLS K +E IYANR+LLLLHANK+DQAREL +ALP MFP+S+IP LLQAA+LVRENKA
Sbjct: 320 DAKLSQKHKEAIYANRVLLLLHANKMDQARELCAALPGMFPESIIPTLLQAAVLVRENKA 379

Query: 366 GRAEEILAQFAGKFPEKSKXXXXXXXXXXXXXXXXXXXXDSLAKISDIQHMPATVATMVS 425
            +AEE+L Q A KFPEKSK                    +SL+KI DIQH+PATVAT+V+
Sbjct: 380 AKAEELLGQCAEKFPEKSKLVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVA 439

Query: 426 LKERAGDIEGAASVLDAATQWWSNAMTEDNKLNVIMQEAASFKLRHGKEEGAAKLYEGLV 485
           LKERAGD +GAA+VLD+A +WWSN+MTE +KL V+M EAA+FKLRHG+EE A++LYE +V
Sbjct: 440 LKERAGDNDGAAAVLDSAIKWWSNSMTESSKLRVLMPEAAAFKLRHGQEEEASRLYEEIV 499

Query: 486 KSQGSIEALVGLITTVARADVVKAELYEKQLKTLAGSKGIDVDSLERTSGVKQVAGPVDV 545
           K+  S +ALVGL+TT+AR +V KAE YEKQLK L G K +DVD LE+T G K + G    
Sbjct: 500 KNHNSTDALVGLVTTLARVNVEKAESYEKQLKPLPGLKAVDVDKLEKTYGAKPIEGA--A 557

Query: 546 TETYEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWLPKRERSTFRPKRKDKRAA 605
             + +E                                ERWLP+RERS+++PKRKDKRAA
Sbjct: 558 ASSSQEEVKKEKAKRKRKRKPKYPKGFDPANPGPPPDPERWLPRRERSSYKPKRKDKRAA 617

Query: 606 QVRGSQGAVAKEKHDAGSSSNHSNPKSNQSTSSKG 640
           Q+RGSQGAV K+K +A  S++    KSNQ  SSKG
Sbjct: 618 QIRGSQGAVTKDKQEAAPSTS----KSNQVASSKG 648


>AT1G67650.1 | Symbols:  | SRP72 RNA-binding domain |
           chr1:25359832-25362395 REVERSE LENGTH=651
          Length = 651

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/635 (54%), Positives = 452/635 (71%), Gaps = 24/635 (3%)

Query: 18  LEDLFTTLSRHIQSSAFDHAAKVADQILAVAPGDEDAIRCKVVALIKVDRVED------- 70
           +EDLFT+L +HI+ + ++ A KVADQ+L++ P DEDAIRCKVVALIK D+ +D       
Sbjct: 16  IEDLFTSLHKHIKDTKYEEAVKVADQVLSIVPTDEDAIRCKVVALIKDDKFDDYLIKDVK 75

Query: 71  ---ALSAIHSSKTLPDDFHYLKAYCLYRQNKLDEALESLRKQERDDETMLLESQILYRLG 127
              ALS I+S    P D  + KAYCLYR+NKLDEAL  L+  ER+ +T+LLE+QIL  LG
Sbjct: 76  INGALSVINS---FPIDLGFHKAYCLYRENKLDEALVCLKGLERESKTLLLEAQILNCLG 132

Query: 128 KMDACLDIYQKLQKSKIDSLEINSVAAFVMAGRSSDVQGLLDSLRLKATSSFELAYNTAC 187
           K+DAC+D+YQKL KS I  +E+N VAA + AG++S V   L+SL+++ T++++LAYNTAC
Sbjct: 133 KVDACVDVYQKLNKSGIKLIEVNLVAALIRAGKASQV---LESLKIRPTTTYQLAYNTAC 189

Query: 188 SLIERKKYTDAEQLLLSGRRIGQEVLMEDNLPDDEIEIELSPLAVQLAYVRQLLGNKQDA 247
           SLIE   Y DAEQLLL+  RIGQE L E +  DD IE +L+P++VQLAYV+Q+LG  Q++
Sbjct: 190 SLIENSNYVDAEQLLLTAMRIGQETLTEGDYSDDYIETQLAPISVQLAYVQQVLGQTQES 249

Query: 248 IEAYTDVIKRDMADESSIAVAINNLVSLRGAKDVSDSLRKLDRLKEKDAQNFRLAHGLDL 307
             +Y D+IKR++ADES +A+A+NNLV+L+G+KD+SD LRK D LK+KD+QNF+L+  LD 
Sbjct: 250 KSSYVDIIKRNLADES-LALAVNNLVALKGSKDISDGLRKFDLLKDKDSQNFQLSQELDA 308

Query: 308 KLSSKERETIYANRILLLLHANKLDQARELVSALPDMFPDSVIPVLLQAALLVRENKAGR 367
           KLS K +E IYANR+LLLLHANK+DQAREL + LP MFP+SVIP LLQAA+LVRENKA +
Sbjct: 309 KLSHKHKEAIYANRVLLLLHANKMDQARELCATLPGMFPESVIPTLLQAAVLVRENKAAK 368

Query: 368 AEEILAQFAGKFPEKSKXXXXXXXXXXXXXXXXXXXXDSLAKISDIQHMPATVATMVSLK 427
           AEE+L Q A  FPEKSK                    +SL+KI DIQH+PATVAT+V+L+
Sbjct: 369 AEELLGQCAENFPEKSKLVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVALR 428

Query: 428 ERAGDIEGAASVLDAATQWWSNAMTEDNKLNVIMQEAASFKLRHGKEEGAAKLYEGLVKS 487
           ERAGD +GA +VLD+A +WWS++MT+ N L ++M  AA+FKLRHG+EE A++LYE +VK+
Sbjct: 429 ERAGDNDGATAVLDSAIRWWSDSMTDSNMLRILMPVAAAFKLRHGQEEEASRLYEEIVKN 488

Query: 488 QGSIEALVGLITTVARADVVKAELYEKQLKTLAGSKGIDVDSLERTSGVKQVAGPVDVTE 547
             S +ALVGL+TT+AR +V KAE YEKQLK L G K +DVD+LE+TSG K + G   ++ 
Sbjct: 489 HNSTDALVGLVTTLARVNVEKAEAYEKQLKPLPGLKAVDVDNLEKTSGAKPIEG---ISA 545

Query: 548 TYEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWLPKRERSTFRPKRKDKRAAQV 607
                                               ERWLP+RERS++RPKRKDKRAAQ+
Sbjct: 546 ASLSQEEVKKEKVKRKRKPKYPKGFDLENSGPTPDPERWLPRRERSSYRPKRKDKRAAQI 605

Query: 608 RGSQGAVAKEKHDAGSSSNHSNPKSNQSTSSKGVA 642
           RGSQGA+ K K +   S++    KS Q+  SK  A
Sbjct: 606 RGSQGALTKVKQEEAPSTS----KSKQAAISKANA 636