Miyakogusa Predicted Gene
- Lj4g3v2513900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2513900.1 Non Chatacterized Hit- tr|I1K3J0|I1K3J0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20253 PE,84.77,0,SIGNAL
RECOGNITION PARTICLE 72,NULL; SIGNAL RECOGNITION PARTICLE 72,Signal
recognition particle, SRP,CUFF.51088.1
(662 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67680.1 | Symbols: | SRP72 RNA-binding domain | chr1:253659... 726 0.0
AT1G67650.1 | Symbols: | SRP72 RNA-binding domain | chr1:253598... 671 0.0
>AT1G67680.1 | Symbols: | SRP72 RNA-binding domain |
chr1:25365962-25368464 REVERSE LENGTH=664
Length = 664
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/635 (57%), Positives = 466/635 (73%), Gaps = 18/635 (2%)
Query: 18 LEDLFTTLSRHIQSSAFDHAAKVADQILAVAPGDEDAIRCKVVALIKVDRVED------- 70
+EDLFT+L +HI+ + ++ A KVADQ+L++ P DEDAIRCKVVALIK D+ +D
Sbjct: 20 IEDLFTSLHQHIKDTKYEEAVKVADQVLSIVPTDEDAIRCKVVALIKDDKFDDYLIKDVK 79
Query: 71 ---ALSAIHSSKTLPDDFHYLKAYCLYRQNKLDEALESLRKQERDDETMLLESQILYRLG 127
ALS I+S + LP D + KAYCLYR NKLDEAL L+ ERD +T++LE+QILYRLG
Sbjct: 80 INGALSVINSFQKLPIDLGFHKAYCLYRVNKLDEALVCLKGLERDTDTLVLEAQILYRLG 139
Query: 128 KMDACLDIYQKLQKSKIDSLEINSVAAFVMAGRSSDVQGLLDSLRLKATSSFELAYNTAC 187
K DAC+D+YQKL KS+I++LE+N VA + AG++S VQ L+SL++K TSSFELAYNTAC
Sbjct: 140 KADACVDVYQKLTKSQIETLEVNLVAGLISAGKASQVQKTLESLKIKPTSSFELAYNTAC 199
Query: 188 SLIERKKYTDAEQLLLSGRRIGQEVLMEDN--LPDDEIEIELSPLAVQLAYVRQLLGNKQ 245
SLIE Y DAEQLLL+ RRIGQE L +D+ L D+EIEIEL+P+AVQLAYV+Q+LG Q
Sbjct: 200 SLIENNNYADAEQLLLTARRIGQETLNDDDIALTDEEIEIELAPIAVQLAYVQQILGQTQ 259
Query: 246 DAIEAYTDVIKRDMADESSIAVAINNLVSLRGAKDVSDSLRKLDRLKEKDAQNFRLAHGL 305
++ +Y D IKR++ADE S+AVA+NNLV+L+G KD+SD LRK D LK+KD+Q F+L+ L
Sbjct: 260 ESTSSYVDFIKRNLADEPSLAVAVNNLVALKGFKDISDGLRKFDLLKDKDSQTFQLSQAL 319
Query: 306 DLKLSSKERETIYANRILLLLHANKLDQARELVSALPDMFPDSVIPVLLQAALLVRENKA 365
D KLS K +E IYANR+LLLLHANK+DQAREL +ALP MFP+S+IP LLQAA+LVRENKA
Sbjct: 320 DAKLSQKHKEAIYANRVLLLLHANKMDQARELCAALPGMFPESIIPTLLQAAVLVRENKA 379
Query: 366 GRAEEILAQFAGKFPEKSKXXXXXXXXXXXXXXXXXXXXDSLAKISDIQHMPATVATMVS 425
+AEE+L Q A KFPEKSK +SL+KI DIQH+PATVAT+V+
Sbjct: 380 AKAEELLGQCAEKFPEKSKLVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVA 439
Query: 426 LKERAGDIEGAASVLDAATQWWSNAMTEDNKLNVIMQEAASFKLRHGKEEGAAKLYEGLV 485
LKERAGD +GAA+VLD+A +WWSN+MTE +KL V+M EAA+FKLRHG+EE A++LYE +V
Sbjct: 440 LKERAGDNDGAAAVLDSAIKWWSNSMTESSKLRVLMPEAAAFKLRHGQEEEASRLYEEIV 499
Query: 486 KSQGSIEALVGLITTVARADVVKAELYEKQLKTLAGSKGIDVDSLERTSGVKQVAGPVDV 545
K+ S +ALVGL+TT+AR +V KAE YEKQLK L G K +DVD LE+T G K + G
Sbjct: 500 KNHNSTDALVGLVTTLARVNVEKAESYEKQLKPLPGLKAVDVDKLEKTYGAKPIEGA--A 557
Query: 546 TETYEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWLPKRERSTFRPKRKDKRAA 605
+ +E ERWLP+RERS+++PKRKDKRAA
Sbjct: 558 ASSSQEEVKKEKAKRKRKRKPKYPKGFDPANPGPPPDPERWLPRRERSSYKPKRKDKRAA 617
Query: 606 QVRGSQGAVAKEKHDAGSSSNHSNPKSNQSTSSKG 640
Q+RGSQGAV K+K +A S++ KSNQ SSKG
Sbjct: 618 QIRGSQGAVTKDKQEAAPSTS----KSNQVASSKG 648
>AT1G67650.1 | Symbols: | SRP72 RNA-binding domain |
chr1:25359832-25362395 REVERSE LENGTH=651
Length = 651
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/635 (54%), Positives = 452/635 (71%), Gaps = 24/635 (3%)
Query: 18 LEDLFTTLSRHIQSSAFDHAAKVADQILAVAPGDEDAIRCKVVALIKVDRVED------- 70
+EDLFT+L +HI+ + ++ A KVADQ+L++ P DEDAIRCKVVALIK D+ +D
Sbjct: 16 IEDLFTSLHKHIKDTKYEEAVKVADQVLSIVPTDEDAIRCKVVALIKDDKFDDYLIKDVK 75
Query: 71 ---ALSAIHSSKTLPDDFHYLKAYCLYRQNKLDEALESLRKQERDDETMLLESQILYRLG 127
ALS I+S P D + KAYCLYR+NKLDEAL L+ ER+ +T+LLE+QIL LG
Sbjct: 76 INGALSVINS---FPIDLGFHKAYCLYRENKLDEALVCLKGLERESKTLLLEAQILNCLG 132
Query: 128 KMDACLDIYQKLQKSKIDSLEINSVAAFVMAGRSSDVQGLLDSLRLKATSSFELAYNTAC 187
K+DAC+D+YQKL KS I +E+N VAA + AG++S V L+SL+++ T++++LAYNTAC
Sbjct: 133 KVDACVDVYQKLNKSGIKLIEVNLVAALIRAGKASQV---LESLKIRPTTTYQLAYNTAC 189
Query: 188 SLIERKKYTDAEQLLLSGRRIGQEVLMEDNLPDDEIEIELSPLAVQLAYVRQLLGNKQDA 247
SLIE Y DAEQLLL+ RIGQE L E + DD IE +L+P++VQLAYV+Q+LG Q++
Sbjct: 190 SLIENSNYVDAEQLLLTAMRIGQETLTEGDYSDDYIETQLAPISVQLAYVQQVLGQTQES 249
Query: 248 IEAYTDVIKRDMADESSIAVAINNLVSLRGAKDVSDSLRKLDRLKEKDAQNFRLAHGLDL 307
+Y D+IKR++ADES +A+A+NNLV+L+G+KD+SD LRK D LK+KD+QNF+L+ LD
Sbjct: 250 KSSYVDIIKRNLADES-LALAVNNLVALKGSKDISDGLRKFDLLKDKDSQNFQLSQELDA 308
Query: 308 KLSSKERETIYANRILLLLHANKLDQARELVSALPDMFPDSVIPVLLQAALLVRENKAGR 367
KLS K +E IYANR+LLLLHANK+DQAREL + LP MFP+SVIP LLQAA+LVRENKA +
Sbjct: 309 KLSHKHKEAIYANRVLLLLHANKMDQARELCATLPGMFPESVIPTLLQAAVLVRENKAAK 368
Query: 368 AEEILAQFAGKFPEKSKXXXXXXXXXXXXXXXXXXXXDSLAKISDIQHMPATVATMVSLK 427
AEE+L Q A FPEKSK +SL+KI DIQH+PATVAT+V+L+
Sbjct: 369 AEELLGQCAENFPEKSKLVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVALR 428
Query: 428 ERAGDIEGAASVLDAATQWWSNAMTEDNKLNVIMQEAASFKLRHGKEEGAAKLYEGLVKS 487
ERAGD +GA +VLD+A +WWS++MT+ N L ++M AA+FKLRHG+EE A++LYE +VK+
Sbjct: 429 ERAGDNDGATAVLDSAIRWWSDSMTDSNMLRILMPVAAAFKLRHGQEEEASRLYEEIVKN 488
Query: 488 QGSIEALVGLITTVARADVVKAELYEKQLKTLAGSKGIDVDSLERTSGVKQVAGPVDVTE 547
S +ALVGL+TT+AR +V KAE YEKQLK L G K +DVD+LE+TSG K + G ++
Sbjct: 489 HNSTDALVGLVTTLARVNVEKAEAYEKQLKPLPGLKAVDVDNLEKTSGAKPIEG---ISA 545
Query: 548 TYEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWLPKRERSTFRPKRKDKRAAQV 607
ERWLP+RERS++RPKRKDKRAAQ+
Sbjct: 546 ASLSQEEVKKEKVKRKRKPKYPKGFDLENSGPTPDPERWLPRRERSSYRPKRKDKRAAQI 605
Query: 608 RGSQGAVAKEKHDAGSSSNHSNPKSNQSTSSKGVA 642
RGSQGA+ K K + S++ KS Q+ SK A
Sbjct: 606 RGSQGALTKVKQEEAPSTS----KSKQAAISKANA 636