Miyakogusa Predicted Gene
- Lj4g3v2500600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2500600.1 tr|A9REY4|A9REY4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65234
,30.3,2e-18,Remorin_C,Remorin, C-terminal; coiled-coil,NULL; seg,NULL;
FAMILY NOT NAMED,NULL,CUFF.51064.1
(538 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30320.1 | Symbols: | Remorin family protein | chr1:10680348... 378 e-105
AT2G02170.2 | Symbols: | Remorin family protein | chr2:556595-5... 204 2e-52
AT2G02170.1 | Symbols: | Remorin family protein | chr2:556595-5... 204 2e-52
AT1G67590.1 | Symbols: | Remorin family protein | chr1:25333137... 82 8e-16
AT1G53860.1 | Symbols: | Remorin family protein | chr1:20107165... 69 1e-11
AT1G67590.2 | Symbols: | Remorin family protein | chr1:25333255... 64 2e-10
>AT1G30320.1 | Symbols: | Remorin family protein |
chr1:10680348-10682852 FORWARD LENGTH=509
Length = 509
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 246/553 (44%), Positives = 320/553 (57%), Gaps = 60/553 (10%)
Query: 1 MEYERIQKVQAGIISPSKLRMKLLGP---RKKDGXXXXXXXXXXXXI-----EDAEFVXX 52
M+YERIQKVQ IISP+KLRMKL+GP K++G +D+EF
Sbjct: 1 MDYERIQKVQKSIISPTKLRMKLMGPLNNMKREGSKSNSNSSRTSPSRLQIPDDSEFSKN 60
Query: 53 XXXXXXXXXXXEVTSPSLEVLSLKPSSDAVLNQRQSDHTSHEPK--ETMPRENGDTVRVK 110
+V + + ++ K ++ VL ++D+ + + +PREN D R+
Sbjct: 61 SLLASNSYSDDDVAATTTDIEVAKLPNEPVLYPTENDNQGSKDRCEGVVPREN-DQPRL- 118
Query: 111 TQHFHKLDTGSSSAIHPMRTTEDENLDYDSNASSSSFEFDK--GERPVSNPATRSR-LRP 167
Q F K D +S H MR EDENLDYDSNASSSSFEF + GER N +R R
Sbjct: 119 -QQFRKGDLNMASP-HIMRPQEDENLDYDSNASSSSFEFHRARGERSNQNHGSRGYPSRQ 176
Query: 168 IPSKWNDAEKWIMNRQNTQASYSKKNINVHGLANRLQASMVRVAPESGNYDHKLPATKVT 227
+PSKWNDAEKWIM+RQN +KN G NR+ VR+ P++ Y+H
Sbjct: 177 MPSKWNDAEKWIMSRQNM---VMRKN----GQGNRIP---VRIVPDNAGYEHN------- 219
Query: 228 ETKRVDFCQPASHAGFEKF-SFVPSDAHSVSGQAHGRIPVAESFPQSKDLKEVNDLGLSC 286
R+D CQ + GFEKF + VPS H + Q +G + + QS DL +
Sbjct: 220 -KSRMDLCQSSQVDGFEKFPNVVPSAPHPILTQEYGGDSLIDQSTQSNDLAD-------- 270
Query: 287 SSSTENETGIPGIRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXXXXXXXXXXXXXXXG 346
SS ++ TG P IRSV MRDMGTEMTP+PSQEPS++ TPVG+
Sbjct: 271 -SSHDHTTGGPAIRSVCMRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPS----- 324
Query: 347 APAPTPLGNTSDEDSQFPAVKSNKHLSEEEMKLKTRREIAALGVRLGKMNIAAWASKDDQ 406
TP G +E S + + + LSEEE K KTRREI ALGV+LGKMNIAAWASK+++
Sbjct: 325 ----TPRGGQPEESSM--SKNTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASKEEE 378
Query: 407 ENKKPSAAETNAREQERIEIEKRAALWEEAEKSRHTARFKREEIKIQAWESQEKAKLEAE 466
ENKK + +A E ++IE EKRA WEEAEKS+H AR+KREEI+IQAWESQEKAKLEAE
Sbjct: 379 ENKKNNG---DAEEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAE 435
Query: 467 MRRTEAKVEQMRAQTHAKMVKKIAMXXXXXXXXXXXXXXXXXXXXXXXXXQAEYIRQTGK 526
MRR EAKVEQM+A+ AK++KKIA+ +A+YIR+TG+
Sbjct: 436 MRRIEAKVEQMKAEAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGR 495
Query: 527 LPSYTH-ICCGWL 538
+P+ ++ ICCGW
Sbjct: 496 IPASSYKICCGWF 508
>AT2G02170.2 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/424 (37%), Positives = 217/424 (51%), Gaps = 50/424 (11%)
Query: 134 ENLDYD------SNASSSSFEFDKGERPVSNP--ATRSRLRPIPSKWNDAEKWIM----N 181
E DYD S ++SS FEF K E+ N RS +P PSKW+DA+KWI N
Sbjct: 93 EYSDYDNVNEIKSVSASSVFEFQKTEKEKVNQRMPIRSFSKPAPSKWDDAQKWIASPTAN 152
Query: 182 RQNT---QASYSKKNINVHGLANRLQASM--VRVAPESGNYDHKLPATKVTETKRVDFCQ 236
R T Q SKK G + Q+SM V VA +H++ + +TKR+D Q
Sbjct: 153 RPKTGQVQVPGSKK-----GPSFGRQSSMKIVEVA------EHRV--VEEPDTKRIDVSQ 199
Query: 237 PASHAGFEKFSFVPSDAHS-VSGQAHGRIPVAESFPQSKDLKEVNDLGLSCSSSTENETG 295
G KF D+++ V + V S +S EVN S +T
Sbjct: 200 VKKDMG-NKFGSWEVDSYTTVDSYVKPVLMVENSIVES--ATEVNLSRHDSSVATAFAQP 256
Query: 296 IPGIRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXXXXXXXXXXXXXXXGAPAPTPLGN 355
RSV+MRDMGTEMTP+ SQEPS+ TP+ + A A +P+
Sbjct: 257 PSTARSVSMRDMGTEMTPIASQEPSRNGTPIRATTPIRSPISSEPSSPGRQASA-SPM-- 313
Query: 356 TSDEDSQFPAVKSNKHLSEEEMKLKTRREIAALGVRLGKMNIAAWASKDDQENKKPSAAE 415
SNK LSE+E+++KTRREI LG +LGK NIAAWASK+D++ ++ +
Sbjct: 314 ------------SNKELSEKELQMKTRREIMVLGTQLGKFNIAAWASKEDEDKDASTSLK 361
Query: 416 TNAREQERIEI-EKRAALWEEAEKSRHTARFKREEIKIQAWESQEKAKLEAEMRRTEAKV 474
T A Q + E RA WEEAEK++H ARF+REE+KIQAWE+ +KAK EAEM++TE KV
Sbjct: 362 TKASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKV 421
Query: 475 EQMRAQTHAKMVKKIAMXXXXXXXXXXXXXXXXXXXXXXXXXQAEYIRQTGKLPSYTHIC 534
E+++ + +++KK+A QAE IR+TGK+PS C
Sbjct: 422 ERIKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSC 481
Query: 535 CGWL 538
+
Sbjct: 482 FSFC 485
>AT2G02170.1 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/424 (37%), Positives = 217/424 (51%), Gaps = 50/424 (11%)
Query: 134 ENLDYD------SNASSSSFEFDKGERPVSNP--ATRSRLRPIPSKWNDAEKWIM----N 181
E DYD S ++SS FEF K E+ N RS +P PSKW+DA+KWI N
Sbjct: 93 EYSDYDNVNEIKSVSASSVFEFQKTEKEKVNQRMPIRSFSKPAPSKWDDAQKWIASPTAN 152
Query: 182 RQNT---QASYSKKNINVHGLANRLQASM--VRVAPESGNYDHKLPATKVTETKRVDFCQ 236
R T Q SKK G + Q+SM V VA +H++ + +TKR+D Q
Sbjct: 153 RPKTGQVQVPGSKK-----GPSFGRQSSMKIVEVA------EHRV--VEEPDTKRIDVSQ 199
Query: 237 PASHAGFEKFSFVPSDAHS-VSGQAHGRIPVAESFPQSKDLKEVNDLGLSCSSSTENETG 295
G KF D+++ V + V S +S EVN S +T
Sbjct: 200 VKKDMG-NKFGSWEVDSYTTVDSYVKPVLMVENSIVES--ATEVNLSRHDSSVATAFAQP 256
Query: 296 IPGIRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXXXXXXXXXXXXXXXGAPAPTPLGN 355
RSV+MRDMGTEMTP+ SQEPS+ TP+ + A A +P+
Sbjct: 257 PSTARSVSMRDMGTEMTPIASQEPSRNGTPIRATTPIRSPISSEPSSPGRQASA-SPM-- 313
Query: 356 TSDEDSQFPAVKSNKHLSEEEMKLKTRREIAALGVRLGKMNIAAWASKDDQENKKPSAAE 415
SNK LSE+E+++KTRREI LG +LGK NIAAWASK+D++ ++ +
Sbjct: 314 ------------SNKELSEKELQMKTRREIMVLGTQLGKFNIAAWASKEDEDKDASTSLK 361
Query: 416 TNAREQERIEI-EKRAALWEEAEKSRHTARFKREEIKIQAWESQEKAKLEAEMRRTEAKV 474
T A Q + E RA WEEAEK++H ARF+REE+KIQAWE+ +KAK EAEM++TE KV
Sbjct: 362 TKASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKV 421
Query: 475 EQMRAQTHAKMVKKIAMXXXXXXXXXXXXXXXXXXXXXXXXXQAEYIRQTGKLPSYTHIC 534
E+++ + +++KK+A QAE IR+TGK+PS C
Sbjct: 422 ERIKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSC 481
Query: 535 CGWL 538
+
Sbjct: 482 FSFC 485
>AT1G67590.1 | Symbols: | Remorin family protein |
chr1:25333137-25334472 REVERSE LENGTH=347
Length = 347
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%)
Query: 426 IEKRAALWEEAEKSRHTARFKREEIKIQAWESQEKAKLEAEMRRTEAKVEQMRAQTHAKM 485
+E RA W+EAE+++ AR+KREE+KIQAWE+ EK K E EM++ E K E+M+A+ K+
Sbjct: 229 MEARAMAWDEAERAKFMARYKREEVKIQAWENHEKRKAEMEMKKMEVKAERMKARAEEKL 288
Query: 486 VKKIAMXXXXXXXXXXXXXXXXXXXXXXXXXQAEYIRQTGKLPS 529
K+A +A+YIR++G LPS
Sbjct: 289 ANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIRRSGHLPS 332
>AT1G53860.1 | Symbols: | Remorin family protein |
chr1:20107165-20109458 REVERSE LENGTH=442
Length = 442
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 139/334 (41%), Gaps = 68/334 (20%)
Query: 164 RLRPIPSKWNDAEKWIMNRQNTQASYSKKNINVHGLANRLQASMVRVAPESGNYDHKLPA 223
R R PSKW DAEKW+ + + ++S KN G ++++ Y K
Sbjct: 117 RRRNFPSKWIDAEKWVTSSGHDSPAHSLKNNQFDGFKHQVEVV----------YSEK--- 163
Query: 224 TKVTETKRVDFCQPASHAGFEKFSFVPSDA---HSVSGQAHGRIPVAESFPQSKDLKEVN 280
++VTE C S S P D ++ + +P E F + + +
Sbjct: 164 SRVTEE-----CFHGS------VSLSPQDLILKDKLANEVPQILPSTEGF-----IFKDS 207
Query: 281 DLGLSCSSSTENETGIPGIRSVAMRDMGTEMTPVPSQEPSQTATPVGSAXXXXXXXXXXX 340
D L + V RDMGTEMTP+ S S+ TP S+
Sbjct: 208 DKFLRYEEA-----------QVQHRDMGTEMTPIGSVTTSRCHTPFKSS----------- 245
Query: 341 XXXXXGAPAPTPLGNTSDEDSQFPAVKSNKHLSEEEMKLKTRREIAALGVRLGKMNIAAW 400
+P S K+ +SE E KL R + + + W
Sbjct: 246 --------SPARHNTPSQLSGPLTETKNVIDISEFEDKL---RLSGSSTSQYCYSVTSHW 294
Query: 401 ASKDDQENKKPSAAETNAREQE--RIEIEKRAALWE-EAEKSRHTARFKREEIKIQAWES 457
S++++E + + E E R E +A LW+ E +K + R++REE KIQAW +
Sbjct: 295 NSREEEEEEISKSLRHFDMESELRRSVSESKAPLWDDEDDKIKFCQRYQREEAKIQAWVN 354
Query: 458 QEKAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAM 491
E AK EA+ R+ E K+++MR+ K++K++ M
Sbjct: 355 LENAKAEAQSRKLEVKIQKMRSNLEEKLMKRMDM 388
>AT1G67590.2 | Symbols: | Remorin family protein |
chr1:25333255-25334472 REVERSE LENGTH=308
Length = 308
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 40/205 (19%)
Query: 128 MRTTEDENLDYDSNAS---SSSFEFDKGERPVSNPATRSRLRPIPSKWNDAEKWIMNRQN 184
MR++ ++N + A+ S+ FEF KG N + +P PSKW+DA+KW+
Sbjct: 1 MRSSVEDNKGWIGPATPEISNGFEFQKGSNRTPNHHRSTMGKPAPSKWDDAQKWLSGVGF 60
Query: 185 TQASYSKKNINVH-GLANRLQASMVRVAPESGNYDHKLPATKVTETKRVDFCQPASHAGF 243
+ + + H +N+ P + N D ++ +R Q
Sbjct: 61 ARGGGGGGDKSSHHSRSNK---------PRNSNADDLRLIASASQREREGEDQ------- 104
Query: 244 EKFSFVPSDAHSVSGQAHGRIPVAESFPQSKDLKEVNDLGLSC--SSSTENETGIPGIRS 301
+V D + A GR V ++K++ D G S S+ N T + IRS
Sbjct: 105 ----YVEYDDEEM---AAGRPEV-----ETKNV----DCGESVWRKESSINPTAV--IRS 146
Query: 302 VAMRDMGTEMTPVPSQEPSQTATPV 326
V +RDMGTEMTP+ SQEPS+TATPV
Sbjct: 147 VCVRDMGTEMTPIGSQEPSRTATPV 171
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 426 IEKRAALWEEAEKSRHTARFKREEIKIQAWESQEKAKLEAEMRRTEAKV 474
+E RA W+EAE+++ AR+KREE+KIQAWE+ EK K E EM++ E +
Sbjct: 229 MEARAMAWDEAERAKFMARYKREEVKIQAWENHEKRKAEMEMKKMEVRC 277