Miyakogusa Predicted Gene

Lj4g3v2435010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2435010.1 Non Chatacterized Hit- tr|I1K3E4|I1K3E4_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,88.46,8e-19,DUF3317,Small subunit of serine
palmitoyltransferase-like,CUFF.51018.1
         (57 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06515.2 | Symbols:  | Protein of unknown function (DUF3317) ...    77   3e-15
AT1G06515.1 | Symbols:  | Protein of unknown function (DUF3317) ...    77   3e-15
AT2G30942.1 | Symbols:  | Protein of unknown function (DUF3317) ...    74   2e-14

>AT1G06515.2 | Symbols:  | Protein of unknown function (DUF3317) |
          chr1:1990951-1991968 REVERSE LENGTH=56
          Length = 56

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 46/55 (83%), Gaps = 4/55 (7%)

Query: 1  MNWVQRKIHLYNVTFGLYMLDWWERCTFNVVVIVLMWFVL----RYITQFFKRYV 51
          MNWVQRKI+LYNVTFGLYMLDWWER  FN +V+VLMWFVL    RY ++ F+R++
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQRHL 55


>AT1G06515.1 | Symbols:  | Protein of unknown function (DUF3317) |
          chr1:1990951-1991968 REVERSE LENGTH=56
          Length = 56

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 46/55 (83%), Gaps = 4/55 (7%)

Query: 1  MNWVQRKIHLYNVTFGLYMLDWWERCTFNVVVIVLMWFVL----RYITQFFKRYV 51
          MNWVQRKI+LYNVTFGLYMLDWWER  FN +V+VLMWFVL    RY ++ F+R++
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQRHL 55


>AT2G30942.1 | Symbols:  | Protein of unknown function (DUF3317) |
          chr2:13170953-13171835 FORWARD LENGTH=56
          Length = 56

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 45/55 (81%), Gaps = 4/55 (7%)

Query: 1  MNWVQRKIHLYNVTFGLYMLDWWERCTFNVVVIVLMWFVL----RYITQFFKRYV 51
          MNWVQRKI+LYNVTFGLYMLDWWER  FN +V++LMWF+L    RY ++  KR++
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVLILMWFILYNGSRYFSELCKRHL 55