Miyakogusa Predicted Gene
- Lj4g3v2422680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2422680.1 tr|E1Z533|E1Z533_CHLVA Expressed protein
OS=Chlorella variabilis GN=CHLNCDRAFT_138026 PE=4
SV=1,40,0.00000000009,no description,NULL; seg,NULL; MRP-S28,Ribosomal
protein S24/S35, mitochondrial, conserved domain; M,CUFF.51012.1
(410 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18240.2 | Symbols: | Ribosomal protein S24/S35, mitochondri... 470 e-133
AT3G18240.1 | Symbols: | Ribosomal protein S24/S35, mitochondri... 470 e-133
AT4G21460.1 | Symbols: | Ribosomal protein S24/S35, mitochondri... 458 e-129
AT1G73770.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 56 4e-08
AT1G73770.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 56 4e-08
>AT3G18240.2 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr3:6255810-6257695 FORWARD LENGTH=419
Length = 419
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/422 (57%), Positives = 304/422 (72%), Gaps = 15/422 (3%)
Query: 1 MRRTLLRNASLLYTRNXXXXXXXXXXXXXXXXXXXXXXXXXXNRFRPRLFSSDE------ 54
MR LLRNASL R +FR FSS+
Sbjct: 1 MRGALLRNASLC-ARRIILSPRITHQISPNVPFLAPIAAPAAPKFR--FFSSESGENSTT 57
Query: 55 TPKSPVPQEPEE----IKDVDNKEFKKMIDQYL-KGDEEVLPLIQEAILIRRLSGKHDDT 109
P+S PE+ ++DV NKE K I++Y +G+E+ LP + EA+L RRL KH +T
Sbjct: 58 APESSPTDSPEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAET 117
Query: 110 DDEMMDELRMGPL-DDVSDREFEEDFEEAHQTDEEIDDLYNARDVVQKRMVHDEYFNMDP 168
DDE+++++ P DDV D +FE DFEEAH TDEE++DLYN+ + V ++M +E+FNMD
Sbjct: 118 DDELLEKIESLPFKDDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMRKNEFFNMDD 177
Query: 169 KKWDEIVQDGVNHGFLKDTKECEEILEDMLSWDKLLPDEIKQKVEIKFNELGDMCERGEL 228
KKWD ++++G+ HG L DTKECEEILEDML WD+LLPD++K+KVE KFNELGDMCERGE+
Sbjct: 178 KKWDHMIREGIQHGCLTDTKECEEILEDMLKWDQLLPDDLKKKVEAKFNELGDMCERGEI 237
Query: 229 EPEASYEQFKKFEDEMVMEYMKIMEKEEAPQSDDTAVPDKKKESDDPPGEGPILRWVTRA 288
E EA+YE FK+FEDEMV++Y ME E PQ +T D+ + DDPPG+GPILRW +R
Sbjct: 238 EAEAAYELFKEFEDEMVIQYGDQMEAEGPPQFGETDASDRNTDLDDPPGKGPILRWQSRI 297
Query: 289 VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERYEHR 348
VFAPGGDAWHPKNRKVK+SVTVKELGLSK+Q +RLRELVGKRYH G+DELTITSER+EHR
Sbjct: 298 VFAPGGDAWHPKNRKVKMSVTVKELGLSKHQAKRLRELVGKRYHSGKDELTITSERFEHR 357
Query: 349 EENRKDCLRTLLSLIEEAGKANKLVDNARTSYAKERLRANPAFMARLHAKSMRVRESNQI 408
EENRKDCLRTL LIEEAGKANK+ ++ RTSY K+RLRANPAFM +L AK +R +ES+ I
Sbjct: 358 EENRKDCLRTLYGLIEEAGKANKIAEDIRTSYVKQRLRANPAFMQKLQAKIIRSKESDAI 417
Query: 409 PA 410
A
Sbjct: 418 NA 419
>AT3G18240.1 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr3:6255810-6257695 FORWARD LENGTH=419
Length = 419
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/422 (57%), Positives = 304/422 (72%), Gaps = 15/422 (3%)
Query: 1 MRRTLLRNASLLYTRNXXXXXXXXXXXXXXXXXXXXXXXXXXNRFRPRLFSSDE------ 54
MR LLRNASL R +FR FSS+
Sbjct: 1 MRGALLRNASLC-ARRIILSPRITHQISPNVPFLAPIAAPAAPKFR--FFSSESGENSTT 57
Query: 55 TPKSPVPQEPEE----IKDVDNKEFKKMIDQYL-KGDEEVLPLIQEAILIRRLSGKHDDT 109
P+S PE+ ++DV NKE K I++Y +G+E+ LP + EA+L RRL KH +T
Sbjct: 58 APESSPTDSPEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAET 117
Query: 110 DDEMMDELRMGPL-DDVSDREFEEDFEEAHQTDEEIDDLYNARDVVQKRMVHDEYFNMDP 168
DDE+++++ P DDV D +FE DFEEAH TDEE++DLYN+ + V ++M +E+FNMD
Sbjct: 118 DDELLEKIESLPFKDDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMRKNEFFNMDD 177
Query: 169 KKWDEIVQDGVNHGFLKDTKECEEILEDMLSWDKLLPDEIKQKVEIKFNELGDMCERGEL 228
KKWD ++++G+ HG L DTKECEEILEDML WD+LLPD++K+KVE KFNELGDMCERGE+
Sbjct: 178 KKWDHMIREGIQHGCLTDTKECEEILEDMLKWDQLLPDDLKKKVEAKFNELGDMCERGEI 237
Query: 229 EPEASYEQFKKFEDEMVMEYMKIMEKEEAPQSDDTAVPDKKKESDDPPGEGPILRWVTRA 288
E EA+YE FK+FEDEMV++Y ME E PQ +T D+ + DDPPG+GPILRW +R
Sbjct: 238 EAEAAYELFKEFEDEMVIQYGDQMEAEGPPQFGETDASDRNTDLDDPPGKGPILRWQSRI 297
Query: 289 VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERYEHR 348
VFAPGGDAWHPKNRKVK+SVTVKELGLSK+Q +RLRELVGKRYH G+DELTITSER+EHR
Sbjct: 298 VFAPGGDAWHPKNRKVKMSVTVKELGLSKHQAKRLRELVGKRYHSGKDELTITSERFEHR 357
Query: 349 EENRKDCLRTLLSLIEEAGKANKLVDNARTSYAKERLRANPAFMARLHAKSMRVRESNQI 408
EENRKDCLRTL LIEEAGKANK+ ++ RTSY K+RLRANPAFM +L AK +R +ES+ I
Sbjct: 358 EENRKDCLRTLYGLIEEAGKANKIAEDIRTSYVKQRLRANPAFMQKLQAKIIRSKESDAI 417
Query: 409 PA 410
A
Sbjct: 418 NA 419
>AT4G21460.1 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr4:11428530-11430390 FORWARD LENGTH=415
Length = 415
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/375 (60%), Positives = 283/375 (75%), Gaps = 12/375 (3%)
Query: 48 RLFSSDETPKSPVPQEPEE----------IKDVDNKEFKKMIDQ-YLKGDEEVLPLIQEA 96
R FSS+ S E ++DV NKE K ID+ + +G+E+ LP + EA
Sbjct: 41 RFFSSESGENSTTATESSPTDSSDKKDLVVEDVSNKELKSRIDKSFNEGNEDALPGVIEA 100
Query: 97 ILIRRLSGKHDDTDDEMMDELRMGPL-DDVSDREFEEDFEEAHQTDEEIDDLYNARDVVQ 155
+L RRL KH +TDDE+M+++ P DDV D +FE DFEEAH TDEE++DLYN+ + V
Sbjct: 101 LLQRRLVDKHAETDDELMEKIESLPFKDDVKDEDFESDFEEAHSTDEELEDLYNSPEYVA 160
Query: 156 KRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILEDMLSWDKLLPDEIKQKVEIK 215
++M E+FNMD KWD ++++G+ HG L DTK+CEEILEDML WD+LLPD++K+KVE K
Sbjct: 161 EKMRKKEFFNMDDNKWDHMIREGIQHGCLTDTKQCEEILEDMLKWDQLLPDDLKKKVEAK 220
Query: 216 FNELGDMCERGELEPEASYEQFKKFEDEMVMEYMKIMEKEEAPQSDDTAVPDKKKESDDP 275
FNELGDMCERGE+E EA+YE FK+FEDEMV++Y ME E PQ +T D+ + DDP
Sbjct: 221 FNELGDMCERGEIEAEAAYELFKEFEDEMVIQYGDQMEAEGPPQFGETDTSDRNTDLDDP 280
Query: 276 PGEGPILRWVTRAVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGR 335
G+GPILRW +R VFAPGGDAWHPKNRKVK+SVTVKELGLS +Q +RLRELVGKRYH G+
Sbjct: 281 SGKGPILRWQSRIVFAPGGDAWHPKNRKVKMSVTVKELGLSNHQAKRLRELVGKRYHSGK 340
Query: 336 DELTITSERYEHREENRKDCLRTLLSLIEEAGKANKLVDNARTSYAKERLRANPAFMARL 395
DELTIT ER+EHREENRKDCLRTL LIEEAGKANK+ ++ RTSY K+RLRA+PAFM +L
Sbjct: 341 DELTITCERFEHREENRKDCLRTLYGLIEEAGKANKIAEDIRTSYVKQRLRASPAFMQKL 400
Query: 396 HAKSMRVRESNQIPA 410
AK +R +ESN I A
Sbjct: 401 QAKIIRSKESNAINA 415
>AT1G73770.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: Ribosomal protein
S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae -
798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:27742215-27742956 FORWARD
LENGTH=191
Length = 191
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 74 EFKKMIDQYLK-GDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDV 125
E KK I +L G+E+ +P + EA++IR+LSGKHDD+DDE+MD +R P++D
Sbjct: 68 ELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDA 120
>AT1G73770.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: Ribosomal protein
S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast
hits to 569 proteins in 87 species: Archae - 0; Bacteria
- 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses -
0; Other Eukaryotes - 69 (source: NCBI BLink). |
chr1:27742215-27742956 FORWARD LENGTH=191
Length = 191
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 74 EFKKMIDQYLK-GDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDV 125
E KK I +L G+E+ +P + EA++IR+LSGKHDD+DDE+MD +R P++D
Sbjct: 68 ELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDA 120