Miyakogusa Predicted Gene
- Lj4g3v2402180.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2402180.1 Non Chatacterized Hit- tr|J3L9W8|J3L9W8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G1,36.96,2e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
PPR,Pentatricopeptide repeat; PPR: pentatricopeptid,CUFF.50971.1
(147 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 2e-09
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li... 58 2e-09
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su... 55 2e-08
AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) sup... 55 2e-08
AT3G01580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 2e-07
AT3G53360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 5e-07
AT1G68930.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 6e-07
AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 6e-07
AT3G11460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 1e-06
AT3G24000.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 1e-06
AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 1e-06
AT5G08305.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 3e-06
AT2G33680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 6e-06
AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 7e-06
>AT3G14730.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:4949385-4951346 REVERSE
LENGTH=653
Length = 653
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 44 DPFPASALVAFYSKFRLPHHARRLFDEISHRDN-VCYSAIIVALAQNSQHLDALLVFADM 102
D + S LV YSKF A+++FDE+ RD+ V ++A++ +Q + DALLVF+ M
Sbjct: 194 DCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKM 253
Query: 103 RDGGFTSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLDSNAV 147
R+ G + H+++ + R IH AV G S+ V
Sbjct: 254 REEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIV 298
>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:22561941-22564433 REVERSE
LENGTH=830
Length = 830
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 46 FPASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDG 105
F AS+L Y K + A ++FDEI R+ V ++A++V QN ++ +A+ +F+DMR
Sbjct: 209 FVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQ 268
Query: 106 GFTSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLD 143
G T +VS E+ + HA A+V G++
Sbjct: 269 GVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGME 306
>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:3791454-3793883 REVERSE
LENGTH=809
Length = 809
Score = 55.1 bits (131), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 50/98 (51%)
Query: 48 ASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGF 107
++ALV Y+K AR+LFD + R+ V ++++I A QN +A+L+F M D G
Sbjct: 274 STALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV 333
Query: 108 TSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLDSN 145
T SV G E+ R IH +V GLD N
Sbjct: 334 KPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 371
>AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:18694816-18696657 REVERSE
LENGTH=613
Length = 613
Score = 55.1 bits (131), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 49 SALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADM 102
+ ++ Y+K HHA+ LFD++ HRD V Y++++ QN H++AL +F+DM
Sbjct: 287 ATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDM 340
>AT3G01580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:223529-225511 REVERSE
LENGTH=660
Length = 660
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 55/137 (40%)
Query: 8 PNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRLPHHARRL 67
P+ TL +L CT +D ++L+ Y+K R A L
Sbjct: 161 PDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNL 220
Query: 68 FDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGFTSTVHSVSGGXXXXXXXXXX 127
F I+ +D + +S +I QN +ALLVF DM D G V +V
Sbjct: 221 FKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDL 280
Query: 128 EQCRMIHAHAVVAGLDS 144
EQ R H A+ GL++
Sbjct: 281 EQGRKTHELAIRKGLET 297
>AT3G53360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:19784502-19786808 FORWARD
LENGTH=768
Length = 768
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 48/106 (45%)
Query: 1 MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
ML P+H T+ +L R C + F + L+ Y+K
Sbjct: 464 MLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGS 523
Query: 61 PHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGG 106
ARR+FD + +RD V +S +IV AQ+ +AL++F +M+ G
Sbjct: 524 LGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAG 569
>AT1G68930.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:25918314-25920545 FORWARD LENGTH=743
Length = 743
Score = 50.1 bits (118), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 46 FPASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDG 105
+ SAL+ Y K + H+A+ +FD + ++ V ++A++V Q + +A+ +F DM+
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRS 365
Query: 106 GFTSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGL 142
G +++ E+ H A+ +GL
Sbjct: 366 GIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGL 402
>AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:883782-885611 FORWARD
LENGTH=609
Length = 609
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 46 FPASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMR-- 103
F +S L Y R P ARR+FDE+ D +C++A++ A ++N + +AL +F M
Sbjct: 199 FISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRG 258
Query: 104 -----DGGFTSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLDSNAV 147
DG TV + G +Q + IH + G+ SN V
Sbjct: 259 KGLVPDGSTFGTVLTACGN------LRRLKQGKEIHGKLITNGIGSNVV 301
>AT3G11460.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:3608250-3610121 FORWARD
LENGTH=623
Length = 623
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 1 MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
MLR + P+ + + ++C +PF +AL++ Y K L
Sbjct: 44 MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGL 103
Query: 61 PHHARRLFDE--ISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGFTSTVHSVSGGX 118
AR++F+E S + +VCY+A+I NS+ DA +F M++ G + ++ G
Sbjct: 104 VADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLV 163
Query: 119 XXXXXXXXXEQCRMIHAHAVVAGLDS 144
R +H V GLDS
Sbjct: 164 PLCTVPEYLWLGRSLHGQCVKGGLDS 189
>AT3G24000.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:8672774-8674881 FORWARD
LENGTH=665
Length = 665
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 1 MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
MLR P+H + ASLF C+ F + L+ Y+K
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312
Query: 61 PHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGF 107
H AR++FD ++ RD V +++++ A AQ+ +A+ F +MR G
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359
>AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:14275800-14277551 FORWARD
LENGTH=583
Length = 583
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 56/145 (38%)
Query: 1 MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
ML P++ T S+ ++C D + +ALV FYSK
Sbjct: 98 MLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157
Query: 61 PHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGFTSTVHSVSGGXXX 120
AR++FD + + V +++++ QN +A+ VF MR+ GF +
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSA 217
Query: 121 XXXXXXXEQCRMIHAHAVVAGLDSN 145
+H + + GLD N
Sbjct: 218 CAQTGAVSLGSWVHQYIISEGLDLN 242
>AT5G08305.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:2670134-2671738 REVERSE
LENGTH=534
Length = 534
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 48/104 (46%)
Query: 1 MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
MLR P+H T L ++ + D F + L+ Y FR
Sbjct: 99 MLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRD 158
Query: 61 PHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRD 104
AR+LFDE+ H++ V +++I+ A A++ + A LVF +M +
Sbjct: 159 QASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSE 202
>AT2G33680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:14249608-14251791 FORWARD
LENGTH=727
Length = 727
Score = 46.6 bits (109), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 50/96 (52%)
Query: 48 ASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGF 107
++ALV YSK + A ++FD R+++ +SA++ +QN + L+A+ +F+ M G
Sbjct: 259 SNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGI 318
Query: 108 TSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLD 143
+ +++ G E+ + +H+ + G +
Sbjct: 319 KPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFE 354
>AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:15665102-15667075 REVERSE
LENGTH=657
Length = 657
Score = 46.6 bits (109), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 50/109 (45%)
Query: 8 PNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRLPHHARRL 67
PN T+ S+F+ C D +A++ FY+K +AR L
Sbjct: 232 PNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARAL 291
Query: 68 FDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGFTSTVHSVSG 116
FDE+S +D+V Y AII + +A+ +F++M G ++ +SG
Sbjct: 292 FDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISG 340