Miyakogusa Predicted Gene

Lj4g3v2402180.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2402180.1 Non Chatacterized Hit- tr|J3L9W8|J3L9W8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G1,36.96,2e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
PPR,Pentatricopeptide repeat; PPR: pentatricopeptid,CUFF.50971.1
         (147 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-09
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li...    58   2e-09
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su...    55   2e-08
AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) sup...    55   2e-08
AT3G01580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   2e-07
AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   5e-07
AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    50   6e-07
AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    50   6e-07
AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   1e-06
AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   1e-06
AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   1e-06
AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    47   3e-06
AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    47   6e-06
AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    47   7e-06

>AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4949385-4951346 REVERSE
           LENGTH=653
          Length = 653

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 44  DPFPASALVAFYSKFRLPHHARRLFDEISHRDN-VCYSAIIVALAQNSQHLDALLVFADM 102
           D +  S LV  YSKF     A+++FDE+  RD+ V ++A++   +Q  +  DALLVF+ M
Sbjct: 194 DCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKM 253

Query: 103 RDGGFTSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLDSNAV 147
           R+ G   + H+++            +  R IH  AV  G  S+ V
Sbjct: 254 REEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIV 298


>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:22561941-22564433 REVERSE
           LENGTH=830
          Length = 830

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 53/98 (54%)

Query: 46  FPASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDG 105
           F AS+L   Y K  +   A ++FDEI  R+ V ++A++V   QN ++ +A+ +F+DMR  
Sbjct: 209 FVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQ 268

Query: 106 GFTSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLD 143
           G   T  +VS            E+ +  HA A+V G++
Sbjct: 269 GVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGME 306


>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3791454-3793883 REVERSE
           LENGTH=809
          Length = 809

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 50/98 (51%)

Query: 48  ASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGF 107
           ++ALV  Y+K      AR+LFD +  R+ V ++++I A  QN    +A+L+F  M D G 
Sbjct: 274 STALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV 333

Query: 108 TSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLDSN 145
             T  SV G           E+ R IH  +V  GLD N
Sbjct: 334 KPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 371


>AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:18694816-18696657 REVERSE
           LENGTH=613
          Length = 613

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 36/54 (66%)

Query: 49  SALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADM 102
           + ++  Y+K    HHA+ LFD++ HRD V Y++++    QN  H++AL +F+DM
Sbjct: 287 ATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDM 340


>AT3G01580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:223529-225511 REVERSE
           LENGTH=660
          Length = 660

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 55/137 (40%)

Query: 8   PNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRLPHHARRL 67
           P+  TL +L   CT                     +D    ++L+  Y+K R    A  L
Sbjct: 161 PDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNL 220

Query: 68  FDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGFTSTVHSVSGGXXXXXXXXXX 127
           F  I+ +D + +S +I    QN    +ALLVF DM D G    V +V             
Sbjct: 221 FKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDL 280

Query: 128 EQCRMIHAHAVVAGLDS 144
           EQ R  H  A+  GL++
Sbjct: 281 EQGRKTHELAIRKGLET 297


>AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:19784502-19786808 FORWARD
           LENGTH=768
          Length = 768

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%)

Query: 1   MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
           ML     P+H T+ +L R C                       + F  + L+  Y+K   
Sbjct: 464 MLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGS 523

Query: 61  PHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGG 106
              ARR+FD + +RD V +S +IV  AQ+    +AL++F +M+  G
Sbjct: 524 LGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAG 569


>AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:25918314-25920545 FORWARD LENGTH=743
          Length = 743

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 47/97 (48%)

Query: 46  FPASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDG 105
           +  SAL+  Y K +  H+A+ +FD +  ++ V ++A++V   Q  +  +A+ +F DM+  
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRS 365

Query: 106 GFTSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGL 142
           G     +++             E+    H  A+ +GL
Sbjct: 366 GIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGL 402


>AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:883782-885611 FORWARD
           LENGTH=609
          Length = 609

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 46  FPASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMR-- 103
           F +S L   Y   R P  ARR+FDE+   D +C++A++ A ++N  + +AL +F  M   
Sbjct: 199 FISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRG 258

Query: 104 -----DGGFTSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLDSNAV 147
                DG    TV +  G           +Q + IH   +  G+ SN V
Sbjct: 259 KGLVPDGSTFGTVLTACGN------LRRLKQGKEIHGKLITNGIGSNVV 301


>AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:3608250-3610121 FORWARD
           LENGTH=623
          Length = 623

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 2/146 (1%)

Query: 1   MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
           MLR  + P+  +   + ++C                       +PF  +AL++ Y K  L
Sbjct: 44  MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGL 103

Query: 61  PHHARRLFDE--ISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGFTSTVHSVSGGX 118
              AR++F+E   S + +VCY+A+I     NS+  DA  +F  M++ G +    ++ G  
Sbjct: 104 VADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLV 163

Query: 119 XXXXXXXXXEQCRMIHAHAVVAGLDS 144
                       R +H   V  GLDS
Sbjct: 164 PLCTVPEYLWLGRSLHGQCVKGGLDS 189


>AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8672774-8674881 FORWARD
           LENGTH=665
          Length = 665

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 49/107 (45%)

Query: 1   MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
           MLR    P+H + ASLF  C+                        F  + L+  Y+K   
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 61  PHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGF 107
            H AR++FD ++ RD V +++++ A AQ+    +A+  F +MR  G 
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359


>AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14275800-14277551 FORWARD
           LENGTH=583
          Length = 583

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 56/145 (38%)

Query: 1   MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
           ML     P++ T  S+ ++C                       D +  +ALV FYSK   
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157

Query: 61  PHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGFTSTVHSVSGGXXX 120
              AR++FD +  +  V +++++    QN    +A+ VF  MR+ GF     +       
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSA 217

Query: 121 XXXXXXXEQCRMIHAHAVVAGLDSN 145
                       +H + +  GLD N
Sbjct: 218 CAQTGAVSLGSWVHQYIISEGLDLN 242


>AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:2670134-2671738 REVERSE
           LENGTH=534
          Length = 534

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 48/104 (46%)

Query: 1   MLRHPAFPNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRL 60
           MLR    P+H T   L ++ +                      D F  + L+  Y  FR 
Sbjct: 99  MLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRD 158

Query: 61  PHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRD 104
              AR+LFDE+ H++ V +++I+ A A++   + A LVF +M +
Sbjct: 159 QASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSE 202


>AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14249608-14251791 FORWARD
           LENGTH=727
          Length = 727

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 50/96 (52%)

Query: 48  ASALVAFYSKFRLPHHARRLFDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGF 107
           ++ALV  YSK    + A ++FD    R+++ +SA++   +QN + L+A+ +F+ M   G 
Sbjct: 259 SNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGI 318

Query: 108 TSTVHSVSGGXXXXXXXXXXEQCRMIHAHAVVAGLD 143
             + +++ G           E+ + +H+  +  G +
Sbjct: 319 KPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFE 354


>AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:15665102-15667075 REVERSE
           LENGTH=657
          Length = 657

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%)

Query: 8   PNHRTLASLFRTCTFXXXXXXXXXXXXXXXXXXXXHDPFPASALVAFYSKFRLPHHARRL 67
           PN  T+ S+F+ C                       D    +A++ FY+K     +AR L
Sbjct: 232 PNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARAL 291

Query: 68  FDEISHRDNVCYSAIIVALAQNSQHLDALLVFADMRDGGFTSTVHSVSG 116
           FDE+S +D+V Y AII     +    +A+ +F++M   G ++    +SG
Sbjct: 292 FDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISG 340