Miyakogusa Predicted Gene

Lj4g3v2401070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2401070.1 CUFF.50972.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68100.1 | Symbols: IAR1 | ZIP metal ion transporter family |...   193   3e-50

>AT1G68100.1 | Symbols: IAR1 | ZIP metal ion transporter family |
           chr1:25521325-25524032 FORWARD LENGTH=469
          Length = 469

 Score =  193 bits (490), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 108/130 (83%)

Query: 1   MALGSAFLLYGSVGGWSRTLFLLAHELPQEIGDFGILIRSGFSIPKALFFNFXXXXXXXX 60
           MALGSAFL+YGSVGGWSRT+FLLAHELPQEIGDFGIL+RSGF++ KALFFNF        
Sbjct: 340 MALGSAFLIYGSVGGWSRTMFLLAHELPQEIGDFGILVRSGFTVTKALFFNFLSALVALA 399

Query: 61  XXXXXXXWGKDPGQSSLIEGFTAGGFIYIAIAGVLAEMNNNGKTTLRSTALQITSLTMGM 120
                  WG +PGQSSLIEGFTAGGFIYIA+AGVLAEMNN+GK+TL+++A  + SL +GM
Sbjct: 400 GTALVLVWGNEPGQSSLIEGFTAGGFIYIAVAGVLAEMNNSGKSTLKNSACHLISLILGM 459

Query: 121 AVALVISLVE 130
           +VAL ISL+E
Sbjct: 460 SVALCISLIE 469