Miyakogusa Predicted Gene

Lj4g3v2400860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2400860.1 Non Chatacterized Hit- tr|I1K261|I1K261_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,67.25,0,DUF4413,Domain of unknown function DUF4413;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; UNCHARACTERI,CUFF.50942.1
         (415 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...   187   2e-47
AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    74   2e-13

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 203/393 (51%), Gaps = 25/393 (6%)

Query: 11  YMVISGHFVDAGWKLQKRVLSCVKVPSPRCGIDVAGAIFKCLKAWRIENKVFSVSVDNDT 70
           Y+ I+ H++D+ WK+QK++L+ +    P     ++ A+  C+  W +E K+F+V+ ++  
Sbjct: 248 YVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPA 307

Query: 71  YNDSCLANLKEKLSLSSKVFLGGALFHVRSYLHVLNSLVQDGLSKIEDIIFNIRESMEYI 130
            N S + N++ +L + +   L G L           SL +D L K +D+I NIR+S++++
Sbjct: 308 SN-SAVENIRPQLCIKNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHV 366

Query: 131 NYNDARLKTFCDVVEQKRLGVRKLL-IDCPTRWNTTFHMLTAALKFKIAFAAYKEREPHY 189
             +++  + F ++ EQ ++   K+L +D  T+WNTT+ ML AA + K  F+     +P Y
Sbjct: 367 KTSESHEERFTELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDY 426

Query: 190 DYAPSLEDWDKVEKVCTLLEVFNSSTHVVSGCEYPTASLCLAKVLRVKQLIDNAAKDGDL 249
              PS EDW  VE +CT L+    +   +     P+A     +V + +  +  A    D 
Sbjct: 427 KKPPSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDP 486

Query: 250 FMREMVAPMKVKFDKYLGECSLLLGVASILDPRCKYHIVDICFPLIYESEEVAKENIKKV 309
           F+  +   M+ K DKY  +CSL+L +A ++DPR K  +V+  F  I+   E A +NIK V
Sbjct: 487 FVTGIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIF--GEDAGKNIKTV 544

Query: 310 RSSLEELYDEYVXXXXXXXXXXXXXXGVNNPTSSTKPRSSFITGFD-HLMSILHEKEVVP 368
              + EL+ EY+                   T+S   ++  ++ FD ++M    +     
Sbjct: 545 DDGIHELFTEYMALPSPQN------------TTSEGGKADGLSDFDTYIMETTGQN---- 588

Query: 369 PVKSELQAYLDGCVYVPDVDNNSFSVLEWWRNN 401
            +KSEL  YLD  + +P V    F VL+WW+ N
Sbjct: 589 -LKSELDQYLDETL-LPRV--QEFDVLDWWKQN 617


>AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr1:6385614-6388005 FORWARD LENGTH=690
          Length = 690

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 12/282 (4%)

Query: 11  YMVISGHFVDAGWKLQKRVLSCVKVPSPRCGIDVAGAIFKCLKAWRIENKVFSVSVDNDT 70
           YM ++G ++D  W   + +L   ++P P  G ++  ++ K LK + IE+++   + DN  
Sbjct: 220 YMSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSE 279

Query: 71  YNDSCLANLKEKLSLSSKVFLGGALFHVRSYLHVLNSLVQDGLSKIEDIIFNIRESMEYI 130
                  +LKE      KV       ++      LN ++ +GL+ I+ II  +RE  + +
Sbjct: 280 NAIHACHSLKEYFD-GQKVL---PFCYIPCAAQTLNDIIDEGLATIKPIISKVREFTQEL 335

Query: 131 NYNDARLKTFCDVVEQKRLGVRKLLIDCPTRWNTTFHMLTAALKFKIAF-AAYKEREPHY 189
           N +      F  +    + G  KL ID  +RW+  + M+    K   +  +  ++ E   
Sbjct: 336 NASTELSDDFIQLTTAYQEGNWKLPIDASSRWSGNYQMVNILCKASKSLDSVIRKNEDAL 395

Query: 190 DYAPSLEDWDK--VEKVCTLLEV--FNSSTHVVSGCEYPTASLCLAKVLRVKQLIDNAAK 245
           +    L   +K  V  V   L++  F+ +T+ +   +  T  L L  +  + ++I    K
Sbjct: 396 ENRMMLSSVEKNAVTIVHNYLDLDSFHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQK 455

Query: 246 D--GDLFMREMVAPMKVKFDKYLGE-CSLLLGVASILDPRCK 284
                 ++R     M  K   Y  + C++   + +ILDPR K
Sbjct: 456 SCHNPDWLRTCAESMAQKARSYNTQVCNVFTYITAILDPRIK 497