Miyakogusa Predicted Gene

Lj4g3v2400580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2400580.1 tr|B9GWT3|B9GWT3_POPTR Tir-nbs resistance protein
OS=Populus trichocarpa GN=POPTRDRAFT_554389 PE=4
S,27.78,0.029,seg,NULL,CUFF.50918.1
         (166 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06145.1 | Symbols:  | unknown protein; Has 15 Blast hits to ...   148   2e-36

>AT3G06145.1 | Symbols:  | unknown protein; Has 15 Blast hits to 15
           proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 15; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:1860118-1860618 REVERSE LENGTH=166
          Length = 166

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 107/167 (64%), Gaps = 18/167 (10%)

Query: 1   MAEKKKQFKSLMGKVQGFSLVP--FGGCFDSCRDHT---QGSGNGTRIWNLSDRPVELQI 55
           M   K+  +S+  K+   S +   +GGC D  R H      +   TR WNLSDRPVELQI
Sbjct: 8   MKFTKEMIESIKDKLPRLSFLRQCYGGCGD--RTHLLPCSIATTSTRFWNLSDRPVELQI 65

Query: 56  RVGSILKKIHTLKPGSSKRVKCKSIYKAYMPVAAXXXXXXXXRSLKNLLYYYDETCHPYI 115
           RVGSILK++HTLKPG SK+++ +SI++AY+                    YYD+TC PY+
Sbjct: 66  RVGSILKRVHTLKPGRSKKLRHRSIHRAYVDDQEGRR-----------WLYYDDTCLPYV 114

Query: 116 WIHDTGCHSLRMVKQQYISLEDLRDSSEIRIFRDHQRGSISVRKRTR 162
           W+H+TG    +MVKQQY+SLEDLRD SEIR+F+D QRG ++V KR R
Sbjct: 115 WVHETGTDLSKMVKQQYVSLEDLRDYSEIRVFKDLQRGCVAVEKRDR 161