Miyakogusa Predicted Gene

Lj4g3v2378400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2378400.1 Non Chatacterized Hit- tr|I3SKC9|I3SKC9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,34.41,0.0000000005,no description,NULL,gene.g56798.t1.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38590.2 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    51   3e-07
AT5G38590.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    51   3e-07

>AT5G38590.2 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:15452066-15453455
           REVERSE LENGTH=410
          Length = 410

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 28  VQHLDLNLYS-NSPINLSSIFSCRTLVVLRLQWLDLNQFSSVVDLPFLKVLHLQDLYFSE 86
           V  LD++ +S N  I LSS F+C++LV L+L+ + L    S+V LP LK L L ++ F E
Sbjct: 104 VHDLDIDHFSENENIFLSSFFACKSLVTLKLRSVTLRDIPSMVCLPSLKTLLLDNVSFVE 163

Query: 87  REYLAEL------LEDLKIYFRLYET 106
            + L EL      LEDL +Y   YE 
Sbjct: 164 GKSLQELLSICPVLEDLSVYCDDYEN 189


>AT5G38590.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:15452586-15453455
           REVERSE LENGTH=289
          Length = 289

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 28  VQHLDLNLYS-NSPINLSSIFSCRTLVVLRLQWLDLNQFSSVVDLPFLKVLHLQDLYFSE 86
           V  LD++ +S N  I LSS F+C++LV L+L+ + L    S+V LP LK L L ++ F E
Sbjct: 104 VHDLDIDHFSENENIFLSSFFACKSLVTLKLRSVTLRDIPSMVCLPSLKTLLLDNVSFVE 163

Query: 87  REYLAEL------LEDLKIYFRLYET 106
            + L EL      LEDL +Y   YE 
Sbjct: 164 GKSLQELLSICPVLEDLSVYCDDYEN 189