Miyakogusa Predicted Gene

Lj4g3v2376320.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2376320.4 Non Chatacterized Hit- tr|F6I1P0|F6I1P0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,79.31,0.0004,no
description,NULL,CUFF.50941.4
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50850.1 | Symbols: MAB1 | Transketolase family protein | chr...    48   1e-06

>AT5G50850.1 | Symbols: MAB1 | Transketolase family protein |
          chr5:20689671-20692976 FORWARD LENGTH=363
          Length = 363

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 24/29 (82%), Gaps = 3/29 (10%)

Query: 32 GNYQ---QITKGLLEKYGPERVLDTPITE 57
          G YQ   +ITKGLLEKYGPERV DTPITE
Sbjct: 64 GQYQGAYKITKGLLEKYGPERVYDTPITE 92