Miyakogusa Predicted Gene

Lj4g3v2376320.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2376320.2 Non Chatacterized Hit- tr|I3T1L3|I3T1L3_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,71.19,0.0000000000001,G_PATCH,G-patch domain; glycine rich nucleic
binding domain,G-patch domain; G-patch,G-patch domain; ,CUFF.50941.2
         (86 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52350.1 | Symbols:  | D111/G-patch domain-containing protein...    59   8e-10
AT5G08535.1 | Symbols:  | D111/G-patch domain-containing protein...    57   3e-09
AT5G08535.2 | Symbols:  | D111/G-patch domain-containing protein...    56   5e-09
AT5G50850.1 | Symbols: MAB1 | Transketolase family protein | chr...    48   1e-06

>AT3G52350.1 | Symbols:  | D111/G-patch domain-containing protein |
           chr3:19409606-19410148 REVERSE LENGTH=180
          Length = 180

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 2   LLKKQGWKEGNGLGISEQGRLEPMETCVKNNKRGLGADK-GKKKAVKSDDSNVSE 55
           LLKK GWKEG GLGI+EQG L P++   K+NK+GLGA+K  K+K  +  D+   E
Sbjct: 86  LLKKHGWKEGTGLGITEQGILVPLQAEPKHNKQGLGAEKPAKRKPAQPQDTAFEE 140


>AT5G08535.1 | Symbols:  | D111/G-patch domain-containing protein
          | chr5:2762455-2763320 FORWARD LENGTH=141
          Length = 141

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 2  LLKKQGWKEGNGLGISEQGRLEPMETCVKNNKRGLGADKGKKKAV 46
          LLKK GWKEG GLGI+EQG L P++   K+NKRG+GA +  K+ V
Sbjct: 48 LLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKRGVGAKQPAKRKV 92


>AT5G08535.2 | Symbols:  | D111/G-patch domain-containing protein
          | chr5:2762722-2763320 FORWARD LENGTH=116
          Length = 116

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 2  LLKKQGWKEGNGLGISEQGRLEPMETCVKNNKRGLGADKGKKKAV 46
          LLKK GWKEG GLGI+EQG L P++   K+NKRG+GA +  K+ V
Sbjct: 23 LLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKRGVGAKQPAKRKV 67


>AT5G50850.1 | Symbols: MAB1 | Transketolase family protein |
          chr5:20689671-20692976 FORWARD LENGTH=363
          Length = 363

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 24/29 (82%), Gaps = 3/29 (10%)

Query: 56 GNYQ---QITKGLLEKYGPERVLDTPITE 81
          G YQ   +ITKGLLEKYGPERV DTPITE
Sbjct: 64 GQYQGAYKITKGLLEKYGPERVYDTPITE 92