Miyakogusa Predicted Gene

Lj4g3v2375050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2375050.1 Non Chatacterized Hit- tr|D0N6P6|D0N6P6_PHYIT
Putative uncharacterized protein OS=Phytophthora infes,32.35,3e-16,RNA
METHYLTRANSFERASE,NULL; alpha/beta knot,NULL; no description,NULL;
SpoU_methylase,tRNA/rRNA meth,CUFF.50895.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15520.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...   352   1e-97
AT5G15390.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...    57   9e-09

>AT4G15520.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
           protein | chr4:8862829-8864366 FORWARD LENGTH=222
          Length = 222

 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/220 (78%), Positives = 194/220 (88%), Gaps = 3/220 (1%)

Query: 2   GWESYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNSFGSHGSSNHLRFRHFHSL 61
           G+ESYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN+FGSHGS++H+RFRHFHSL
Sbjct: 3   GFESYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFGSHGSASHIRFRHFHSL 62

Query: 62  QDARHYLKHERDCDICGVEITDDALPVNHQPFSKNTAFLLGNEGSGLSPKEVEICDFFVY 121
            +AR+YLK E+DCDICGVEI D A  VN  PF +NTAFLLGNEGSGLS KE EICDFFVY
Sbjct: 63  IEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICDFFVY 122

Query: 122 IPQYGGGTASLNVTVAASIVLHHFAVWAGFDERSRDGNKFVVAERPVKQSRRNYCAEAEE 181
           IPQYG GTASLNVTVAASIVLHHF VWAGF ER RDG+KF+VA+RPV+Q RRN+CA  EE
Sbjct: 123 IPQYGCGTASLNVTVAASIVLHHFGVWAGFSERVRDGSKFIVADRPVRQGRRNFCAGTEE 182

Query: 182 SVIEERKARRENAANGGFFDE--TESGNSSSSLLDALFVD 219
           SVIEERK R+E+A N GFFD+   E+G+SSS LLD LF++
Sbjct: 183 SVIEERKLRKESAEN-GFFDDNGNENGSSSSDLLDGLFLN 221


>AT5G15390.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
           protein | chr5:4995333-4997255 FORWARD LENGTH=350
          Length = 350

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 20/188 (10%)

Query: 7   VVVHNIAKRHNVGTLARSATAFGVTELILVG-----RRDFNSFGSHGSSNHLRFRHFHSL 61
           +VV  ++   N+    RSA A G+  + +V      R + N   S G+   L    + + 
Sbjct: 157 LVVEGLSDFGNISAAFRSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTP 216

Query: 62  QDARHYLKHERDCDICGVEITDDALPVNHQPFSKNTAFLLGNEGSGLSPKEVEICDFFVY 121
           ++    LK  R   I    +  D + +    +S  TA ++GNEG G+S + +E+ D    
Sbjct: 217 KECFKVLK-SRGYRIATTHLGMDTVSIYDMDWSCPTAIVVGNEGRGISDEALELSDLRCS 275

Query: 122 IPQYGGGTASLNVTVAASIVLHHFAVWAGFDERSRDGN---------KFVVAERPVKQSR 172
           IP   G   S NV+VAA I++HH    A  D  +R G+         + ++AE  ++ SR
Sbjct: 276 IPM-NGMVDSFNVSVAAGILMHH----AVSDRTTRLGSHGDLSEAEKEILMAEFSLRHSR 330

Query: 173 RNYCAEAE 180
            + C   E
Sbjct: 331 SSICIAYE 338