Miyakogusa Predicted Gene

Lj4g3v2375020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2375020.1 Non Chatacterized Hit- tr|B9ET76|B9ET76_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,42.05,0.000001,seg,NULL; FAMILY NOT NAMED,NULL;
coiled-coil,NULL,CUFF.50873.1
         (339 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15545.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   355   3e-98
AT1G16520.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   204   7e-53
AT1G56080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   199   3e-51

>AT4G15545.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:8875932-8877567 FORWARD LENGTH=337
          Length = 337

 Score =  355 bits (911), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/338 (57%), Positives = 237/338 (70%), Gaps = 14/338 (4%)

Query: 2   AAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEKD 61
           +A +G  +FDLPD+L+QVLPSDPFEQLD+ARKITSIALS RV+ALESESS+LR  +AEK+
Sbjct: 14  SAITGSRSFDLPDELLQVLPSDPFEQLDVARKITSIALSTRVSALESESSDLRELLAEKE 73

Query: 62  HLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFRK 121
               ELQS ++SL+A+LS     L  A+ +KE+LI ENASLSNTV++L RDVSKLE FRK
Sbjct: 74  KEFEELQSHVESLEASLSDAFHKLSLADGEKENLIRENASLSNTVKRLQRDVSKLEGFRK 133

Query: 122 TLMRSLQEEDDNSGGAPDMVAKVXXXXXXXXXXXFGDNEAXXXXXXXXXXXXXXDTGNSF 181
           TLM SLQ++D N+G    ++AK              D                 +     
Sbjct: 134 TLMMSLQDDDQNAGTT-QIIAKPTPNDD--------DTPFQPSRHSSIQSQQASEAIEPA 184

Query: 182 AEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPSLSASVSPTRTSKPVSPRRHSISFA 241
           A D+E+DA +P +  SL L SQ+TTPRLTPPGSPP LSAS +P  TS+P+SPRRHS+SFA
Sbjct: 185 ATDNENDAPKPSLSASLPLVSQTTTPRLTPPGSPPILSASGTPKTTSRPISPRRHSVSFA 244

Query: 242 TSRGMHDDRTXXXXXXXXXXXXXXXXXXRTRVDGKEFFRQVRNRLSYEQFGAFLANVKEL 301
           T+RGM DD                    RTRVDGKEFFRQVR+RLSYEQFGAFL NVK+L
Sbjct: 245 TTRGMFDD-----TRSSISISEPGSQTARTRVDGKEFFRQVRSRLSYEQFGAFLGNVKDL 299

Query: 302 NSHKQTREVTLQKADEIFGPENKDLYNIFEGLITRNVH 339
           N+HKQTRE TL+KA+EIFG +N+DLY IFEGLITRN H
Sbjct: 300 NAHKQTREETLRKAEEIFGGDNRDLYVIFEGLITRNAH 337


>AT1G16520.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast
           hits to 234 proteins in 69 species: Archae - 2; Bacteria
           - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0;
           Other Eukaryotes - 44 (source: NCBI BLink). |
           chr1:5648904-5650998 FORWARD LENGTH=325
          Length = 325

 Score =  204 bits (519), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 182/345 (52%), Gaps = 38/345 (11%)

Query: 8   LNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEKDHLIAEL 67
           L+F+LP++++ V+P DPFEQLDLARKITS+A+++RV+ L+SE  ELR ++  K+ ++ EL
Sbjct: 6   LDFELPEEVLSVIPMDPFEQLDLARKITSMAIASRVSNLDSEVVELRQKLLGKESVVREL 65

Query: 68  QSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFRKTLMRSL 127
           + +   L+         L    +D  +L  E  SL+ TV KL RD++KLE F++ L++SL
Sbjct: 66  EEKASRLERDCREADSRLKVVLEDNMNLTKEKDSLAMTVTKLTRDLAKLETFKRQLIKSL 125

Query: 128 QEED------------DNSGGAPDMVAKVXXXXXXXXXXXFGDNEAXXXXXXXXXXXXXX 175
            +E             D  G  P    ++             D                 
Sbjct: 126 SDESGPQTEPVDIRTCDQPGSYPGKDGRINAHSIKQAYSGSTDTNNPVVEASKY------ 179

Query: 176 DTGNSFAEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPSLSASVSPTRTSKPVSPRR 235
            TGN F+                   +   +PRLTP  +P  +S SVSP   S   SP+R
Sbjct: 180 -TGNKFS------------------MTSYISPRLTPTATPKIISTSVSPRGYSAAGSPKR 220

Query: 236 HSISFATSRGMHDDRTXXXXXXXXXXXXXXXXXXRT-RVDGKEFFRQVRNRLSYEQFGAF 294
            S + + ++      +                  RT R+DGKEFFRQ R+RLSYEQF +F
Sbjct: 221 TSGAVSPTKATLWYPSSQQSSAANSPPRNRTLPARTPRMDGKEFFRQARSRLSYEQFSSF 280

Query: 295 LANVKELNSHKQTREVTLQKADEIFGPENKDLYNIFEGLITRNVH 339
           LAN+KELN+ KQTRE TL+KADEIFG ENKDLY  F+GL+ RN+ 
Sbjct: 281 LANIKELNAQKQTREETLRKADEIFGEENKDLYLSFQGLLNRNMR 325


>AT1G56080.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G16520.1); Has 196 Blast
           hits to 193 proteins in 50 species: Archae - 2; Bacteria
           - 0; Metazoa - 9; Fungi - 2; Plants - 132; Viruses - 0;
           Other Eukaryotes - 51 (source: NCBI BLink). |
           chr1:20974457-20976215 REVERSE LENGTH=310
          Length = 310

 Score =  199 bits (505), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 180/340 (52%), Gaps = 38/340 (11%)

Query: 1   MAAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEK 60
           M+   GD  F+L D+++ V+P+DP++QLDLARKITS+A+++RV+ LES+ S LR ++ EK
Sbjct: 1   MSQSGGD--FNLSDEILAVIPTDPYDQLDLARKITSMAIASRVSNLESQVSGLRQKLLEK 58

Query: 61  DHLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFR 120
           D L+ EL+ ++ S +        +L     +   L  E  SL+ T +KL RD +KLE F+
Sbjct: 59  DRLVHELEDRVSSFERLYHEADSSLKNVVDENMKLTQERDSLAITAKKLGRDYAKLEAFK 118

Query: 121 KTLMRSLQEEDDNSGGAPDMVAKVXXXXXXXXXXXFGDNEAXXXXXXXXXXXXXXDTGNS 180
           + LM+SL +++ +     D V  V           + +NE                    
Sbjct: 119 RQLMQSLNDDNPSQTETAD-VRMVPRGKDENSNGSYSNNEG------------------- 158

Query: 181 FAEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPSLSASVSPTRTSKPVSPRRHSISF 240
            +E  +  ++ P+            +P  TP G+P  LS + SP   S   SP+  S + 
Sbjct: 159 LSEARQRQSMTPQF-----------SPAFTPSGTPKILSTAASPRSYSAASSPKLFSGAA 207

Query: 241 ATSRGMHDDRTXXXXXXXXXXXXX-----XXXXXRTRVDGKEFFRQVRNRLSYEQFGAFL 295
           + +   +D R                          R+DGKEFFRQ R+RLSYEQF AFL
Sbjct: 208 SPTSSHYDIRMWSSTSQQSSVANSPPRSHSVSARHPRIDGKEFFRQARSRLSYEQFSAFL 267

Query: 296 ANVKELNSHKQTREVTLQKADEIFGPENKDLYNIFEGLIT 335
           AN+KELN+ KQ RE TLQKA+EIFG EN DLY  F+GL+T
Sbjct: 268 ANIKELNARKQGREETLQKAEEIFGKENNDLYISFKGLLT 307