Miyakogusa Predicted Gene

Lj4g3v2374990.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2374990.2 tr|G7JJ08|G7JJ08_MEDTR Pyrimidine-specific
ribonucleoside hydrolase rihB OS=Medicago truncatula
GN=M,80.32,0,seg,NULL; IU_nuc_hydro,Inosine/uridine-preferring
nucleoside hydrolase domain; INOSINE-URIDINE PREFE,CUFF.50888.2
         (893 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18860.1 | Symbols:  | inosine-uridine preferring nucleoside ...  1199   0.0  
AT5G18890.1 | Symbols:  | Inosine-uridine preferring nucleoside ...   695   0.0  
AT5G18870.1 | Symbols:  | Inosine-uridine preferring nucleoside ...   320   4e-87
AT2G36310.1 | Symbols: URH1 | uridine-ribohydrolase 1 | chr2:152...    52   3e-06

>AT5G18860.1 | Symbols:  | inosine-uridine preferring nucleoside
           hydrolase family protein | chr5:6291023-6295581 FORWARD
           LENGTH=890
          Length = 890

 Score = 1199 bits (3101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/844 (67%), Positives = 685/844 (81%), Gaps = 9/844 (1%)

Query: 56  FALLYLLKLNRSQFQLEGITINANSWLDAGHAVNQIYDILYMMGRDDIAVGVGGEGGILP 115
           FA+LYLLKLN+S+F L GIT++AN+W +AGHAVNQ+YD+L+MM RDDI VGVGGEGGI  
Sbjct: 46  FAILYLLKLNKSEFDLVGITLSANAWTNAGHAVNQVYDLLHMMDRDDIPVGVGGEGGISD 105

Query: 116 NGTILPNVGGYLPIIEQGITTVGGCRYRRAIPLGLGGRLDIDANFGIRKAFLPQGKRKYT 175
           +GTI  +VGGY PIIEQG+TT G CRYR+AIP GLGG LDID+N+G RK FLPQG R+YT
Sbjct: 106 DGTIHSDVGGYFPIIEQGMTTTGECRYRQAIPKGLGGLLDIDSNYGFRKQFLPQGNRRYT 165

Query: 176 PLKQPTSQEVLIEKISEGPITLLVTGVHTNIAIFLMNNPHLKKNVEHIYIMGGGVRSSNP 235
           PL+QPT+Q+V+++KISEGP T+++ G HTN A+FLM+NPHLK N++HIYIMGGGVRS NP
Sbjct: 166 PLQQPTAQKVIVDKISEGPTTVILLGSHTNFALFLMSNPHLKHNIQHIYIMGGGVRSQNP 225

Query: 236 TGCCPKNASSSSCVPRQCGDRGNMFTDYNTNPYAEFNMFGDPFAAYQVIHSGIPITLVPL 295
           TGCCP N++ + C PRQCG+RGN+FTDY +NPY+EFN+F DPFAAYQV HSG+P+TLVPL
Sbjct: 226 TGCCPANSTVAECQPRQCGNRGNLFTDYTSNPYSEFNIFADPFAAYQVFHSGVPVTLVPL 285

Query: 296 DATNTIPINEEFFDVFEKT-QETYEAQYIFKSLKMARDTWFDDQFYSSYFMWDSFAAGIA 354
           DATNTIPIN++FF+ FE   Q TYEAQY+F SLK+ARDTWFDD+FY SYFMWDSF AG+A
Sbjct: 286 DATNTIPINQKFFETFENNYQRTYEAQYVFLSLKIARDTWFDDEFYKSYFMWDSFTAGVA 345

Query: 355 VSTMSKS---NNPEGENEFAEMEYINITVVTSNKPYGISDGSNPLFDGLKVPKFNLEKGG 411
           VS M  S   NN  GEN+FAEMEY+NITVVTSNKPYG SDGSNP FD  + PKFNL  GG
Sbjct: 346 VSIMRNSANKNNKNGENDFAEMEYMNITVVTSNKPYGRSDGSNPFFDNRRTPKFNLALGG 405

Query: 412 VHSGHIQQGLRDPLCFVKN--GRGRCQDGYTSEAHGPDSVRVLVATKAKPNRDVRSSLDR 469
           VHSGH+Q GLRDP C  K+  GRG+C+DGYT E  G DSVRVLVAT+AKPN +++S LDR
Sbjct: 406 VHSGHVQTGLRDPTCLPKSGIGRGKCKDGYTQEISGSDSVRVLVATRAKPNINIKSKLDR 465

Query: 470 EYYKSFLNVLKQPQHTGKFNFTTQFPYYKEVTYKPDFHNKTLGKPVVFDMDMSAGDFLAL 529
           E+Y  FL VL +P+ TG+FNF++QFPYYKE  ++PD      GKPVVFDMDMSAGDFL+L
Sbjct: 466 EFYVDFLEVLNRPEETGRFNFSSQFPYYKEELFRPDLSKTRPGKPVVFDMDMSAGDFLSL 525

Query: 530 FYLLKVPVEVINLKAIIVSPTGWANAATIDIIYDLLHMMGRDDIPVGLGDVFAVNQSDPI 589
           FYLLKVPV+ I+LKAIIVSPTGWANAATID++YDLLHMMGRDDIPVGLGD+ A+NQSDPI
Sbjct: 526 FYLLKVPVDKIDLKAIIVSPTGWANAATIDVVYDLLHMMGRDDIPVGLGDMLALNQSDPI 585

Query: 590 FSAVGDCKYVRAIPHGSGGFLDSDTLYGLARDLPRSPRRYTAENSVKFGAPRDTDHPELR 649
           F  VG CKYV+AIP G GGFLDSDTLYGLARDLPRSPRRYTAENSV  GAPRDTD PELR
Sbjct: 586 FPPVGGCKYVKAIPRGCGGFLDSDTLYGLARDLPRSPRRYTAENSVTHGAPRDTDRPELR 645

Query: 650 QPLAMEVWESVLQTTEPGSKITVLTNGPLTNLA-KVVSVENIRSRIKEVYVVGGHISQNA 708
           QPLA+EVW+++ ++    SKITVLTNGPLTNLA  + S +   S IKEVY+VGGHI++  
Sbjct: 646 QPLAIEVWQNLTKSGNGVSKITVLTNGPLTNLAKIISSDKKSSSLIKEVYIVGGHINREK 705

Query: 709 NDKGNIFSVPSNQYAEFNMFLDPLAAKTVFESEVNITLIPLSAQRKVSSFSTAIGQLRTK 768
           +DKGNIF++PSN YAEFNMFLDPLAAKTV ES +NITL+PL+ Q K+SSF T + +L + 
Sbjct: 706 SDKGNIFTIPSNAYAEFNMFLDPLAAKTVLESALNITLVPLATQHKLSSFQTMLDRLYSS 765

Query: 769 STTPEAVFSKRLLSSLYHLKQIHNKYHHMDTFLGEILGAVTL-ADTSKLDPRFELKPVKV 827
           + TPEA F KRLL  L  L Q H +Y H+D FLGE+LGAV L  D + L P+   + +KV
Sbjct: 766 TKTPEARFVKRLLVRLQALHQKHRRYTHIDMFLGEVLGAVLLGGDDASLKPKMRAEHIKV 825

Query: 828 LADGVESTDGKIAVEK-HGKLVRILSRVSAMAYYNLLADKLGDHNQSAKVGSFEEQTRKW 886
           +A+G ES DGKI ++K  GK ++IL RV  ++     A +L D  QSA +GSFEEQ + W
Sbjct: 826 IAEGDESRDGKILIDKLRGKQIKILERVDLISISESFASRLDDKKQSAVIGSFEEQKKIW 885

Query: 887 RHSP 890
              P
Sbjct: 886 STPP 889


>AT5G18890.1 | Symbols:  | Inosine-uridine preferring nucleoside
           hydrolase family protein | chr5:6301652-6304088 FORWARD
           LENGTH=550
          Length = 550

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/529 (63%), Positives = 414/529 (78%), Gaps = 7/529 (1%)

Query: 366 GENEFAEMEYINITVVTSNKPYGISDGSNPLFDGLKVPKFNLEKGGVHSGHIQQGLRDPL 425
           G+N+FAEMEY+NITVVTSN+PYG+ D SNP F   + PKFNL  GGVHSGH+Q+GLRDP+
Sbjct: 14  GQNDFAEMEYMNITVVTSNEPYGLFDSSNPFFYKRRTPKFNLTLGGVHSGHVQRGLRDPI 73

Query: 426 CFVKNGRGRCQDGYTSEAHGPDSVRVLVATKAKPNRDVRSSLDREYYKSFLNVLKQPQHT 485
           C   +G+G C+DGYT E  GPDSVRVLVAT+AKP++++ S LDRE+Y  FL VL +P+ T
Sbjct: 74  CISTSGKGNCRDGYTKETSGPDSVRVLVATRAKPSKNLNSELDREFYDHFLEVLNRPEET 133

Query: 486 GKFNFTTQFPYYKEVTYKPDFHNKTLG-KPVVFDMDMSAGDFLALFYLLKVPVEVINLKA 544
           G+F+F+TQF YY+E  +  + +N  LG KPVVFDMDMSAGDFL+LFYLLKVPVE+I+LKA
Sbjct: 134 GRFHFSTQFLYYREELFIAELNNSRLGGKPVVFDMDMSAGDFLSLFYLLKVPVEIIDLKA 193

Query: 545 IIVSPTGWANAATIDIIYDLLHMMGRDDIPVGLGDVFAVNQSDPIFSAVGDCKYVRAIPH 604
           +IVSPTGWAN ATID++YDLLHMMGRDDIPVGLGD+FA+NQS+P+F + GDCKY +A+P 
Sbjct: 194 VIVSPTGWANTATIDVVYDLLHMMGRDDIPVGLGDMFAINQSEPVFPSAGDCKYAKAVPQ 253

Query: 605 GSGGFLDSDTLYGLARDLPRSPRRYTAENSVKFGAPRDTDHPELRQPLAMEVWESVLQTT 664
           G GGFLDSDTLYGLARDLPRSPRRY  ENSV  GAP DTD PELRQPLA+EVW+++ ++ 
Sbjct: 254 GCGGFLDSDTLYGLARDLPRSPRRY--ENSVAHGAPSDTDRPELRQPLALEVWQNLTKSV 311

Query: 665 EPGSKITVLTNGPLTNLAKVVSVE-NIRSRIKEVYVVGGHISQNANDKGNIFSVPSNQYA 723
           +  SKITVLTNGPLT+LAK++S + N  S IKEVY+VGGHIS+  +DKGNIF+VPSN YA
Sbjct: 312 DEVSKITVLTNGPLTSLAKIISSDKNSSSIIKEVYIVGGHISRGKSDKGNIFTVPSNSYA 371

Query: 724 EFNMFLDPLAAKTVFESEVNITLIPLSAQRKVSSFSTAIGQLRTKSTTPEAVFSKRLLSS 783
           EFNMFLDPLAAKTV ES +NITLIPL+ QR+  SF   + +L + + TPEA F KRLL+ 
Sbjct: 372 EFNMFLDPLAAKTVLESGLNITLIPLATQREF-SFQAMLNRLYSSTKTPEARFVKRLLTR 430

Query: 784 LYHLKQIHNKYHHMDTFLGEILGAVTL-ADTSKLDPRFELKPVKVLADGVESTDGKIAVE 842
           L  L Q   +Y HMD FLGEILGA+ L  D + L P+   + +KV+A+G ES DG I ++
Sbjct: 431 LQALHQKQRRYMHMDMFLGEILGAIFLGGDHALLKPKMRTEYIKVIAEGDESKDGHILID 490

Query: 843 K-HGKLVRILSRVSAMAYYNLLADKLGDHNQSAKVGSFEEQTRKWRHSP 890
           K  GK ++IL RV     Y   A +L D  QSA +GSFEEQ  KW   P
Sbjct: 491 KLRGKQIKILERVDLRGCYESFASRLDDKKQSAVIGSFEEQRMKWNTPP 539



 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 146/302 (48%), Gaps = 55/302 (18%)

Query: 44  ILMDTDVDTDDFFALLYLLKLNRSQFQLEGITINANSWLDAGHAVNQIYDILYMMGRDDI 103
           ++ D D+   DF +L YLLK+      L+ + ++   W +    ++ +YD+L+MMGRDDI
Sbjct: 164 VVFDMDMSAGDFLSLFYLLKVPVEIIDLKAVIVSPTGWANTA-TIDVVYDLLHMMGRDDI 222

Query: 104 AVGVGGEGGILPNGTILPNVGGYLPIIEQGITTVGGCRYRRAIPLGLGGRLDIDANFGIR 163
            VG+G    I  +  + P              + G C+Y +A+P G GG LD D  +G+ 
Sbjct: 223 PVGLGDMFAINQSEPVFP--------------SAGDCKYAKAVPQGCGGFLDSDTLYGLA 268

Query: 164 KAFLPQGKRKYT--------------PLKQPTSQEV---LIEKISE-GPITLLVTGVHTN 205
           +  LP+  R+Y                L+QP + EV   L + + E   IT+L  G  T+
Sbjct: 269 RD-LPRSPRRYENSVAHGAPSDTDRPELRQPLALEVWQNLTKSVDEVSKITVLTNGPLTS 327

Query: 206 IAIFLMNNPHLKKNVEHIYIMGGGVRSSNPTGCCPKNASSSSCVPRQCGDRGNMFTDYNT 265
           +A  + ++ +    ++ +YI+GG +                    R   D+GN+FT   +
Sbjct: 328 LAKIISSDKNSSSIIKEVYIVGGHI-------------------SRGKSDKGNIFT-VPS 367

Query: 266 NPYAEFNMFGDPFAAYQVIHSGIPITLVPLDATNTIPINEEFFDVFEKTQETYEAQYIFK 325
           N YAEFNMF DP AA  V+ SG+ ITL+PL              ++  T+ T EA+++ +
Sbjct: 368 NSYAEFNMFLDPLAAKTVLESGLNITLIPLATQREFSFQAMLNRLYSSTK-TPEARFVKR 426

Query: 326 SL 327
            L
Sbjct: 427 LL 428


>AT5G18870.1 | Symbols:  | Inosine-uridine preferring nucleoside
           hydrolase family protein | chr5:6298386-6300289 FORWARD
           LENGTH=258
          Length = 258

 Score =  320 bits (819), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/244 (65%), Positives = 196/244 (80%), Gaps = 21/244 (8%)

Query: 41  PRRILMDTDVDTDDFFALLYLLKLNRSQFQLEGITINANSWLDAGHAVNQIYDILYMMGR 100
           P RIL+DTDVDTDDF ALLYLLKLN+++F L GIT++ANSW +AGH VN IYDILYMMGR
Sbjct: 28  PHRILLDTDVDTDDFIALLYLLKLNKTEFDLVGITLSANSWTNAGHGVNHIYDILYMMGR 87

Query: 101 DDIAVGVGGEGGILPNGTILPNVGGYLPIIEQGITTVGGCRYRRAIPLGLGGRLD-IDAN 159
           DDI VGVGGEGGIL +GTILP+VG YLPIIEQG+TT GGCRYR++IP    GR+  ID+N
Sbjct: 88  DDITVGVGGEGGILEDGTILPDVGDYLPIIEQGMTTAGGCRYRQSIP---KGRIQKIDSN 144

Query: 160 FGIRKAFLPQGKRKYTPLKQPTSQEVLIEKISEGPITLLVTGVHTNIAIFLMNNPHLKKN 219
           +G RK FLPQG R+YTPL+QPT+Q+V+++K+SEGPI++ V G HTN+A+F+M+NPHLK N
Sbjct: 145 YGFRKHFLPQGNRRYTPLEQPTAQKVIVDKVSEGPISIFVIGSHTNLALFMMSNPHLKHN 204

Query: 220 VEHIYIMGGGVRSSNPTGCCPKNASSSSCVPRQCGDRGNMFTDYNTNPYAEFNMFGDPFA 279
           ++HIY+MGG VR  NP G C                 GN+FTDY +NPYAEFN+F DPFA
Sbjct: 205 IQHIYVMGGSVRCQNPNGFC-----------------GNLFTDYTSNPYAEFNIFTDPFA 247

Query: 280 AYQV 283
           AYQV
Sbjct: 248 AYQV 251



 Score =  107 bits (266), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 119/234 (50%), Gaps = 42/234 (17%)

Query: 526 FLALFYLLKVPVEVINLKAIIVSPTGWANAAT-IDIIYDLLHMMGRDDIPVGLGDVFAVN 584
           F+AL YLLK+     +L  I +S   W NA   ++ IYD+L+MMGRDDI VG+G    + 
Sbjct: 42  FIALLYLLKLNKTEFDLVGITLSANSWTNAGHGVNHIYDILYMMGRDDITVGVGGEGGIL 101

Query: 585 QSDPIFSAVGD--------------CKYVRAIPHGSGGFLDSDTLYGLARD-LPRSPRRY 629
           +   I   VGD              C+Y ++IP G    +DS+  YG  +  LP+  RRY
Sbjct: 102 EDGTILPDVGDYLPIIEQGMTTAGGCRYRQSIPKGRIQKIDSN--YGFRKHFLPQGNRRY 159

Query: 630 TAENSVKFGAPRDTDHPELRQPLAMEVWESVLQTTEPGSKITVLTNGPLTNLAK-VVSVE 688
           T                 L QP A +V   ++     G  I++   G  TNLA  ++S  
Sbjct: 160 TP----------------LEQPTAQKV---IVDKVSEG-PISIFVIGSHTNLALFMMSNP 199

Query: 689 NIRSRIKEVYVVGGHI-SQNAND-KGNIFS-VPSNQYAEFNMFLDPLAAKTVFE 739
           +++  I+ +YV+GG +  QN N   GN+F+   SN YAEFN+F DP AA  VF 
Sbjct: 200 HLKHNIQHIYVMGGSVRCQNPNGFCGNLFTDYTSNPYAEFNIFTDPFAAYQVFR 253


>AT2G36310.1 | Symbols: URH1 | uridine-ribohydrolase 1 |
           chr2:15224692-15226633 REVERSE LENGTH=336
          Length = 336

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 62/256 (24%)

Query: 510 TLGK--PVVFDMDMSAGDFLALFYLLKVP-VEVINLKAIIVSPTGWANAATIDIIYD--- 563
            LGK   ++ D D    D +A+    + P +E++ L  +      + N +T D   +   
Sbjct: 17  VLGKHEKLIIDTDPGIDDSMAILMAFQTPELEILGLTTV------FGNVSTQDATRNALL 70

Query: 564 LLHMMGRDDIPVGLGDVFAVNQSDPIFSAVGDCKYVRAIPHGSGGFLDSDTLYGLARDLP 623
           L  + G  D+PV  G       S+P+    G    V    HG  G  D          LP
Sbjct: 71  LCEIAGFPDVPVAEG------SSEPL---KGGIPRVADFVHGKNGLGDVS--------LP 113

Query: 624 RSPRRYTAENSVKFGAPRDTDHPELRQPLAMEVWESVLQTTEPGSKITVLTNGPLTNLAK 683
              R+ + +++ +F   +  ++P                      ++T+L  GPLTNLA 
Sbjct: 114 PPSRKKSEKSAAEFLDEKVEEYP---------------------GEVTILALGPLTNLAL 152

Query: 684 VVSVE-NIRSRIKEVYVVGGHISQNANDKGNIFSVPSNQYAEFNMFLDPLAAKTVFESEV 742
            +  + +  S++K++ ++GG      N          N  AE N++ DP AA  VF S  
Sbjct: 153 AIKRDSSFASKVKKIVILGGAFFSLGN---------VNPAAEANIYGDPEAADVVFTSGA 203

Query: 743 NITL--IPLSAQRKVS 756
           +IT+  I ++ Q K+S
Sbjct: 204 DITVVGINITTQLKLS 219