Miyakogusa Predicted Gene

Lj4g3v2374790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2374790.1 tr|G7JJ22|G7JJ22_MEDTR Helicase swr1 OS=Medicago
truncatula GN=MTR_4g118720 PE=4 SV=1,54.51,0,seg,NULL,CUFF.50916.1
         (1627 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...    80   9e-15
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...    80   9e-15
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...    80   9e-15

>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3543
          Length = 3543

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1    MKISDVPNVGVESN-GVKRKSGSVGGPDTQHYGRGKRAREVRSYEEQWTEEEFDKMCQSE 59
            MK++DVP V  ES  G+KRK GS+GG DT  YGRGKRAREVRSYEE+ TEEEF+K+CQ+E
Sbjct: 1325 MKLNDVPMVAKESTVGMKRKDGSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTE 1384

Query: 60   STDSPKVK 67
            S DSP+ K
Sbjct: 1385 SPDSPQGK 1392


>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3529
          Length = 3529

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1    MKISDVPNVGVESN-GVKRKSGSVGGPDTQHYGRGKRAREVRSYEEQWTEEEFDKMCQSE 59
            MK++DVP V  ES  G+KRK GS+GG DT  YGRGKRAREVRSYEE+ TEEEF+K+CQ+E
Sbjct: 1325 MKLNDVPMVAKESTVGMKRKDGSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTE 1384

Query: 60   STDSPKVK 67
            S DSP+ K
Sbjct: 1385 SPDSPQGK 1392


>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3574
          Length = 3574

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1    MKISDVPNVGVESN-GVKRKSGSVGGPDTQHYGRGKRAREVRSYEEQWTEEEFDKMCQSE 59
            MK++DVP V  ES  G+KRK GS+GG DT  YGRGKRAREVRSYEE+ TEEEF+K+CQ+E
Sbjct: 1325 MKLNDVPMVAKESTVGMKRKDGSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTE 1384

Query: 60   STDSPKVK 67
            S DSP+ K
Sbjct: 1385 SPDSPQGK 1392