Miyakogusa Predicted Gene

Lj4g3v2373760.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2373760.1 tr|G7JJ22|G7JJ22_MEDTR Helicase swr1 OS=Medicago
truncatula GN=MTR_4g118720 PE=4 SV=1,74.5,0,coiled-coil,NULL; no
description,Glutamine-Leucine-Glutamine, QLQ; seg,NULL;
HSA,Helicase/SANT-assoc,CUFF.50853.1
         (933 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...   310   2e-84
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...   310   2e-84
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...   310   3e-84

>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
           triphosphate hydrolases superfamily protein |
           chr2:12056771-12072950 FORWARD LENGTH=3574
          Length = 3574

 Score =  310 bits (795), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/268 (57%), Positives = 192/268 (71%), Gaps = 7/268 (2%)

Query: 666 SSDQEGNEILVSSDLSSSKKYTMSERWIMDQQRKRLLVEQNWVQKHQKTKERMTTCFHKL 725
           S ++EGN       L  S KYTMS++WIM +Q KRLLV+++W  K QK  + + + F++L
Sbjct: 450 SDEEEGN-------LQPSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNEL 502

Query: 726 KENVSSSEDISAKTKSVIXXXXXXXXXXXXXXRSDFLNDFFKPITTEMEHLKSIKKHRHG 785
           KE+VS S+DISAKTKSVI              RS+F+ +FFKPI T++EHLKS KKH+HG
Sbjct: 503 KESVSLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHG 562

Query: 786 RRVKQLXXXXXXXXXXXXXXXXXXXXXFFSEIEVHKEKLDDVFKIKKERWKGFNRYVKEF 845
           RR+KQL                     FF  +EVHKEKL+D+FK+++ER KGFNRY KEF
Sbjct: 563 RRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEF 622

Query: 846 HKRKERIHREKVDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK 905
           HKRKER+HREK+D+IQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK
Sbjct: 623 HKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK 682

Query: 906 LQAAKAAAGRFGHDIDETGSRSFLDNST 933
           L+ AK    RF ++ DET + +  D+ T
Sbjct: 683 LKEAKLLTSRFENEADETRTSNATDDET 710



 Score =  169 bits (429), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 113/173 (65%), Gaps = 8/173 (4%)

Query: 3   SLNNVELEAANFLHKLIQDSKDEPAKLATKLHVILQHMKSSGKENSMPYQVISRAMETVI 62
           S +N+ELEAA FLHKLIQDSKDEPAKLATKL+VILQHMK+SGKEN+MPYQVISRAM+TV+
Sbjct: 4   SSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQVISRAMDTVV 63

Query: 63  SQHGLDIEALKPSRLPLTGGPLIGSS-------SSQTVGRTKDSRVGLAENEASKMDPFT 115
           +QHGLDIEALK S LP  GG     S       SSQ VG + + +  L ENE +K D FT
Sbjct: 64  NQHGLDIEALKSSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGKATLVENEMTKYDAFT 123

Query: 116 SGRPPIAPTGGAPDYYQGSVAQKXXXXXXXXXXXXLDSRSANSQSQDRRDTAN 168
           SGR        +  +YQGS  Q             LDS S  SQ  +R +T N
Sbjct: 124 SGRQLGGSNSASQTFYQGSGTQ-SNRSFDRESPSNLDSTSGISQPHNRSETMN 175



 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 71/122 (58%), Gaps = 23/122 (18%)

Query: 376 PPGSSVKPFNEQQLKQLRAQCLVFLAIRNGLAPKKLHLEIALGATFSREDSSRKDLIDHK 435
           P GS   PF EQQLKQLRAQCLVFLA+RNGL PKKLH+EIAL  TF  ED  R +L D K
Sbjct: 274 PSGS---PFREQQLKQLRAQCLVFLALRNGLVPKKLHVEIALRNTFREEDGFRGELFDPK 330

Query: 436 GKSQSFNEPVNTSGVMMPFGGLSNV----RQTDKNPFGSSSAGKFLEADSLSTGTESPRM 491
           G++ + ++           GG+ +V     +TD NP      G+  E D  S  TE  R+
Sbjct: 331 GRTHTSSD----------LGGIPDVSALLSRTD-NP-----TGRLDEMDFSSKETERSRL 374

Query: 492 LE 493
            E
Sbjct: 375 GE 376


>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
           triphosphate hydrolases superfamily protein |
           chr2:12056771-12072950 FORWARD LENGTH=3543
          Length = 3543

 Score =  310 bits (795), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/268 (57%), Positives = 192/268 (71%), Gaps = 7/268 (2%)

Query: 666 SSDQEGNEILVSSDLSSSKKYTMSERWIMDQQRKRLLVEQNWVQKHQKTKERMTTCFHKL 725
           S ++EGN       L  S KYTMS++WIM +Q KRLLV+++W  K QK  + + + F++L
Sbjct: 450 SDEEEGN-------LQPSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNEL 502

Query: 726 KENVSSSEDISAKTKSVIXXXXXXXXXXXXXXRSDFLNDFFKPITTEMEHLKSIKKHRHG 785
           KE+VS S+DISAKTKSVI              RS+F+ +FFKPI T++EHLKS KKH+HG
Sbjct: 503 KESVSLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHG 562

Query: 786 RRVKQLXXXXXXXXXXXXXXXXXXXXXFFSEIEVHKEKLDDVFKIKKERWKGFNRYVKEF 845
           RR+KQL                     FF  +EVHKEKL+D+FK+++ER KGFNRY KEF
Sbjct: 563 RRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEF 622

Query: 846 HKRKERIHREKVDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK 905
           HKRKER+HREK+D+IQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK
Sbjct: 623 HKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK 682

Query: 906 LQAAKAAAGRFGHDIDETGSRSFLDNST 933
           L+ AK    RF ++ DET + +  D+ T
Sbjct: 683 LKEAKLLTSRFENEADETRTSNATDDET 710



 Score =  169 bits (429), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 113/173 (65%), Gaps = 8/173 (4%)

Query: 3   SLNNVELEAANFLHKLIQDSKDEPAKLATKLHVILQHMKSSGKENSMPYQVISRAMETVI 62
           S +N+ELEAA FLHKLIQDSKDEPAKLATKL+VILQHMK+SGKEN+MPYQVISRAM+TV+
Sbjct: 4   SSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQVISRAMDTVV 63

Query: 63  SQHGLDIEALKPSRLPLTGGPLIGSS-------SSQTVGRTKDSRVGLAENEASKMDPFT 115
           +QHGLDIEALK S LP  GG     S       SSQ VG + + +  L ENE +K D FT
Sbjct: 64  NQHGLDIEALKSSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGKATLVENEMTKYDAFT 123

Query: 116 SGRPPIAPTGGAPDYYQGSVAQKXXXXXXXXXXXXLDSRSANSQSQDRRDTAN 168
           SGR        +  +YQGS  Q             LDS S  SQ  +R +T N
Sbjct: 124 SGRQLGGSNSASQTFYQGSGTQ-SNRSFDRESPSNLDSTSGISQPHNRSETMN 175



 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 71/122 (58%), Gaps = 23/122 (18%)

Query: 376 PPGSSVKPFNEQQLKQLRAQCLVFLAIRNGLAPKKLHLEIALGATFSREDSSRKDLIDHK 435
           P GS   PF EQQLKQLRAQCLVFLA+RNGL PKKLH+EIAL  TF  ED  R +L D K
Sbjct: 274 PSGS---PFREQQLKQLRAQCLVFLALRNGLVPKKLHVEIALRNTFREEDGFRGELFDPK 330

Query: 436 GKSQSFNEPVNTSGVMMPFGGLSNV----RQTDKNPFGSSSAGKFLEADSLSTGTESPRM 491
           G++ + ++           GG+ +V     +TD NP      G+  E D  S  TE  R+
Sbjct: 331 GRTHTSSD----------LGGIPDVSALLSRTD-NP-----TGRLDEMDFSSKETERSRL 374

Query: 492 LE 493
            E
Sbjct: 375 GE 376


>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
           triphosphate hydrolases superfamily protein |
           chr2:12056771-12072950 FORWARD LENGTH=3529
          Length = 3529

 Score =  310 bits (795), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/268 (57%), Positives = 192/268 (71%), Gaps = 7/268 (2%)

Query: 666 SSDQEGNEILVSSDLSSSKKYTMSERWIMDQQRKRLLVEQNWVQKHQKTKERMTTCFHKL 725
           S ++EGN       L  S KYTMS++WIM +Q KRLLV+++W  K QK  + + + F++L
Sbjct: 450 SDEEEGN-------LQPSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNEL 502

Query: 726 KENVSSSEDISAKTKSVIXXXXXXXXXXXXXXRSDFLNDFFKPITTEMEHLKSIKKHRHG 785
           KE+VS S+DISAKTKSVI              RS+F+ +FFKPI T++EHLKS KKH+HG
Sbjct: 503 KESVSLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHG 562

Query: 786 RRVKQLXXXXXXXXXXXXXXXXXXXXXFFSEIEVHKEKLDDVFKIKKERWKGFNRYVKEF 845
           RR+KQL                     FF  +EVHKEKL+D+FK+++ER KGFNRY KEF
Sbjct: 563 RRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEF 622

Query: 846 HKRKERIHREKVDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK 905
           HKRKER+HREK+D+IQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK
Sbjct: 623 HKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSK 682

Query: 906 LQAAKAAAGRFGHDIDETGSRSFLDNST 933
           L+ AK    RF ++ DET + +  D+ T
Sbjct: 683 LKEAKLLTSRFENEADETRTSNATDDET 710



 Score =  169 bits (429), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 113/173 (65%), Gaps = 8/173 (4%)

Query: 3   SLNNVELEAANFLHKLIQDSKDEPAKLATKLHVILQHMKSSGKENSMPYQVISRAMETVI 62
           S +N+ELEAA FLHKLIQDSKDEPAKLATKL+VILQHMK+SGKEN+MPYQVISRAM+TV+
Sbjct: 4   SSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQVISRAMDTVV 63

Query: 63  SQHGLDIEALKPSRLPLTGGPLIGSS-------SSQTVGRTKDSRVGLAENEASKMDPFT 115
           +QHGLDIEALK S LP  GG     S       SSQ VG + + +  L ENE +K D FT
Sbjct: 64  NQHGLDIEALKSSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGKATLVENEMTKYDAFT 123

Query: 116 SGRPPIAPTGGAPDYYQGSVAQKXXXXXXXXXXXXLDSRSANSQSQDRRDTAN 168
           SGR        +  +YQGS  Q             LDS S  SQ  +R +T N
Sbjct: 124 SGRQLGGSNSASQTFYQGSGTQ-SNRSFDRESPSNLDSTSGISQPHNRSETMN 175



 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 71/122 (58%), Gaps = 23/122 (18%)

Query: 376 PPGSSVKPFNEQQLKQLRAQCLVFLAIRNGLAPKKLHLEIALGATFSREDSSRKDLIDHK 435
           P GS   PF EQQLKQLRAQCLVFLA+RNGL PKKLH+EIAL  TF  ED  R +L D K
Sbjct: 274 PSGS---PFREQQLKQLRAQCLVFLALRNGLVPKKLHVEIALRNTFREEDGFRGELFDPK 330

Query: 436 GKSQSFNEPVNTSGVMMPFGGLSNV----RQTDKNPFGSSSAGKFLEADSLSTGTESPRM 491
           G++ + ++           GG+ +V     +TD NP      G+  E D  S  TE  R+
Sbjct: 331 GRTHTSSD----------LGGIPDVSALLSRTD-NP-----TGRLDEMDFSSKETERSRL 374

Query: 492 LE 493
            E
Sbjct: 375 GE 376