Miyakogusa Predicted Gene

Lj4g3v2371690.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2371690.1 tr|C1E813|C1E813_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_59212
,25.2,0.0003,no description,NULL; F-box domain,F-box domain,
cyclin-like; A Receptor for Ubiquitination Targets,F,CUFF.50846.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15563.1 | Symbols:  | unknown protein; Has 36 Blast hits to ...   143   1e-34

>AT4G15563.1 | Symbols:  | unknown protein; Has 36 Blast hits to 36
           proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:8891771-8892348 FORWARD LENGTH=167
          Length = 167

 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 100/151 (66%)

Query: 95  RHVELGLRARTVEMFLKACSPSESLEVGDYLKAVDTLVGLRFGFEDIQRYLFNPKMNVLI 154
           +H E+  RA  V  ++     + SLE G YL AV+T+  +RFGF+D++ + F P ++VL+
Sbjct: 2   QHKEMASRASEVIKYVTKSPATLSLEAGIYLHAVETMSSMRFGFQDVELFFFKPNLSVLL 61

Query: 155 NLVGLHYCLSSLGIRGENLLEVLRTCEISDRRVVVKWWKLGRWLHGYRMRDEFHSRWVSL 214
           NL+GL YC+  L  R E +++VLR C IS++ V VKW  LGRW  G RMRD+  SR VSL
Sbjct: 62  NLIGLIYCIQHLKPRREQVVDVLRQCGISEQLVWVKWLTLGRWSGGSRMRDDIVSRQVSL 121

Query: 215 ADLATQDDGNVLGVLRRGTIHEVLRVQISAV 245
            D+ T  +  VL VL+RG +HEVLRV IS V
Sbjct: 122 VDVVTGKEETVLRVLQRGVVHEVLRVCISTV 152