Miyakogusa Predicted Gene
- Lj4g3v2364200.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2364200.1 Non Chatacterized Hit- tr|B9SU07|B9SU07_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,32.68,2e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
mTERF,Mitochodrial transcription termination factor,CUFF.50809.1
(380 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07900.1 | Symbols: | Mitochondrial transcription terminatio... 211 9e-55
AT1G21150.1 | Symbols: | Mitochondrial transcription terminatio... 161 7e-40
AT1G61980.1 | Symbols: | Mitochondrial transcription terminatio... 150 1e-36
AT1G61970.2 | Symbols: | Mitochondrial transcription terminatio... 149 4e-36
AT1G61970.1 | Symbols: | Mitochondrial transcription terminatio... 149 4e-36
AT1G62120.1 | Symbols: | Mitochondrial transcription terminatio... 145 5e-35
AT1G61990.1 | Symbols: | Mitochondrial transcription terminatio... 132 5e-31
AT3G46950.1 | Symbols: | Mitochondrial transcription terminatio... 118 8e-27
AT1G56380.2 | Symbols: | Mitochondrial transcription terminatio... 110 2e-24
AT1G56380.1 | Symbols: | Mitochondrial transcription terminatio... 109 3e-24
AT1G62010.1 | Symbols: | Mitochondrial transcription terminatio... 109 4e-24
AT5G64950.1 | Symbols: | Mitochondrial transcription terminatio... 107 1e-23
AT1G62150.1 | Symbols: | Mitochondrial transcription terminatio... 104 1e-22
AT1G62085.1 | Symbols: | Mitochondrial transcription terminatio... 103 2e-22
AT1G61960.1 | Symbols: | Mitochondrial transcription terminatio... 102 3e-22
AT1G62110.1 | Symbols: | Mitochondrial transcription terminatio... 92 5e-19
AT5G23930.1 | Symbols: | Mitochondrial transcription terminatio... 87 1e-17
AT1G62490.1 | Symbols: | Mitochondrial transcription terminatio... 70 3e-12
AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active... 64 2e-10
AT2G36000.2 | Symbols: | Mitochondrial transcription terminatio... 58 9e-09
AT2G36000.1 | Symbols: | Mitochondrial transcription terminatio... 58 9e-09
AT1G74120.1 | Symbols: | Mitochondrial transcription terminatio... 57 2e-08
AT1G79220.1 | Symbols: | Mitochondrial transcription terminatio... 52 8e-07
AT4G14605.1 | Symbols: | Mitochondrial transcription terminatio... 51 1e-06
>AT5G07900.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:2520188-2521405 FORWARD
LENGTH=405
Length = 405
Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 202/364 (55%), Gaps = 12/364 (3%)
Query: 26 YVFLQLKPFHSPLSLFSTTSHSSDKQ----SFTLSYFTNTCGFSHQAALKAANRVRFDDA 81
+VF F SP++ ++ + D+Q SFTL+Y ++CG S +A A+ ++ D
Sbjct: 39 FVFSLQTQFSSPVTTLTSKNPKDDEQQQKLSFTLNYLIDSCGLSPDSATVASRKLLLDSP 98
Query: 82 NKPDSVIAFFTNHGFSISQIHIIIRRLPELLVFDPTKTLLPKLQFIASKG---SDIVTTV 138
+P++V+ +HGF+ +QI ++++ P LL+ + LLPKL F S G S + T+
Sbjct: 99 ERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTL 158
Query: 139 TKSPYLLRQSLENYIIPAFEFVRTFCPSDEKAIDCVLFGSNIITIDQWKS---KVNLLLD 195
P +L +SL N +IP++ F+++ SDEK + + + + D K+ +N + +
Sbjct: 159 ASDPTILTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAE 218
Query: 196 MGVSPTNIYILLRTRPNMLRCADLKLKEAVEELKGLGFHPSKTAFSFALLAKRAM-VKSN 254
GV I +LL P + + + + ++ + +GF+P K+ F A+ A KS
Sbjct: 219 TGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSI 278
Query: 255 WDAKVDAFKTWGWSEDAVLLAFKREPRFMLYSIKKLNAVMSFWVGHLGWDPSVLLAVPAL 314
WD + ++ WGWSED ++ AFK+ P M+ S +K+N M ++V + P + P +
Sbjct: 279 WDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVV 338
Query: 315 FGFSLEKRLVPRASVLKYLLSRGLMKKDASLSAPFFMTEKSFLQKFVKSFEEEETSRILS 374
FSLEKR++PR SV K L+S GL+K+D SL++ EK FL+K V + EEE +++
Sbjct: 339 LFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKY-EEELPELMN 397
Query: 375 LYRG 378
LY G
Sbjct: 398 LYLG 401
>AT1G21150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:7406406-7407578 REVERSE
LENGTH=390
Length = 390
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 166/324 (51%), Gaps = 7/324 (2%)
Query: 51 QSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPE 110
+SFT+SY ++CG S ++A + V+ + KPDSV+A F +HGF+ QI +I+ P
Sbjct: 55 ESFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPR 114
Query: 111 LLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPSD 167
+L P + PKL F +S G SD ++ SP +L SL +IP ++ +++ +
Sbjct: 115 VLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEE 174
Query: 168 EKAIDCVLFGSNIITIDQWKS---KVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEA 224
E + C+ G ++ +V++ ++GV +I L++ P + + E
Sbjct: 175 ESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEV 234
Query: 225 VEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFML 284
+ + GF P K F A++A +S + K F+ +GWS++ + A R P +
Sbjct: 235 LNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVT 294
Query: 285 YSIKKLNAVMSFWVGHLGWDPSVLLAVPALFGFSLEKRLVPRASVLKYLLSRGLMKK-DA 343
S +K+ + + V ++G ++A P + S+EKR+ PR V+ LLS+GL+KK D
Sbjct: 295 VSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDI 354
Query: 344 SLSAPFFMTEKSFLQKFVKSFEEE 367
+ + F+ KFV +++E
Sbjct: 355 NYFTILKLKSSEFMDKFVLKYQDE 378
>AT1G61980.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22908162-22909418 FORWARD
LENGTH=418
Length = 418
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 187/370 (50%), Gaps = 45/370 (12%)
Query: 51 QSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPE 110
+SFT+SY ++ G + A + +V F+D + PDSV+ +HGF+ SQI I+ P+
Sbjct: 51 KSFTVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQ 110
Query: 111 LLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRT--FCP 165
LLV D K+L PKLQF+ S+G S++ V+ P +L + I ++F++
Sbjct: 111 LLVADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLLDK 170
Query: 166 SDEKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAV 225
S + C F ++ +++L ++G+ P + L ++ K +E++
Sbjct: 171 SSKSEKSCQPFPQG--NLENKIRNLSVLRELGM-PHKLLFPLLISCDVPVFGKEKFEESL 227
Query: 226 EELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLY 285
+++ +GF PS + F AL + + N + KV+A+K G+ + V FKR P F+ +
Sbjct: 228 KKVVEMGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTH 287
Query: 286 SIKK-LNAVMS----------------------------------FWVGHLGWDPSVLLA 310
S KK LN + + F V + W L++
Sbjct: 288 SEKKILNTIETFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVS 347
Query: 311 VPALFGFSLEKRLVPRASVLKYLLSRGLMKKD-ASLSAPFFMTEKSFLQKFVKSFEEEE- 368
PA+ G+SLEKR VPR +V++ L+S+GL+ + S+S F T++ FL ++VK E+++
Sbjct: 348 NPAVLGYSLEKRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYVKRHEDKQL 407
Query: 369 TSRILSLYRG 378
+ ++++YR
Sbjct: 408 ETELMAIYRA 417
>AT1G61970.2 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904713-22905969 FORWARD
LENGTH=418
Length = 418
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 188/372 (50%), Gaps = 49/372 (13%)
Query: 51 QSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPE 110
+FT+SY ++ G + + A + +V F+D N PDSV+ T+HGF+ SQI IIR P+
Sbjct: 51 NNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQ 110
Query: 111 LLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRTF---- 163
LL+ D K+L PKLQF+ S+G S+I V+ P +L + I ++F++
Sbjct: 111 LLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEK 170
Query: 164 CPSDEKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKE 223
+EK + G+ ++ V++L ++G+ P + L + C K +E
Sbjct: 171 SSKNEKLCHSLPQGN----LENKIRNVSVLRELGM-PHKLLFSLLISDSQPVCGKEKFEE 225
Query: 224 AVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFM 283
++++ +GF P+ + F AL M + + KV +K+ G+ V +FK+ P +
Sbjct: 226 TLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPISL 285
Query: 284 LYSIKK-LNAVMS----------------------------------FWVGHLGWDPSVL 308
S KK L+++ + F V + W +
Sbjct: 286 RVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWPLKAV 345
Query: 309 LAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKD-ASLSAPFFMTEKSFLQKFVKSFEEE 367
++ PA+FG+SLEKR+VPR +V+K L+S+GLM+ + S+S T++ FL ++V + ++
Sbjct: 346 VSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVANHVDK 405
Query: 368 E-TSRILSLYRG 378
+ + ++++YR
Sbjct: 406 QLVTELMAIYRA 417
>AT1G61970.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904713-22905969 FORWARD
LENGTH=418
Length = 418
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 188/372 (50%), Gaps = 49/372 (13%)
Query: 51 QSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPE 110
+FT+SY ++ G + + A + +V F+D N PDSV+ T+HGF+ SQI IIR P+
Sbjct: 51 NNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQ 110
Query: 111 LLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRTF---- 163
LL+ D K+L PKLQF+ S+G S+I V+ P +L + I ++F++
Sbjct: 111 LLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEK 170
Query: 164 CPSDEKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKE 223
+EK + G+ ++ V++L ++G+ P + L + C K +E
Sbjct: 171 SSKNEKLCHSLPQGN----LENKIRNVSVLRELGM-PHKLLFSLLISDSQPVCGKEKFEE 225
Query: 224 AVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFM 283
++++ +GF P+ + F AL M + + KV +K+ G+ V +FK+ P +
Sbjct: 226 TLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPISL 285
Query: 284 LYSIKK-LNAVMS----------------------------------FWVGHLGWDPSVL 308
S KK L+++ + F V + W +
Sbjct: 286 RVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWPLKAV 345
Query: 309 LAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKD-ASLSAPFFMTEKSFLQKFVKSFEEE 367
++ PA+FG+SLEKR+VPR +V+K L+S+GLM+ + S+S T++ FL ++V + ++
Sbjct: 346 VSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVANHVDK 405
Query: 368 E-TSRILSLYRG 378
+ + ++++YR
Sbjct: 406 QLVTELMAIYRA 417
>AT1G62120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22960326-22961639 REVERSE
LENGTH=437
Length = 437
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 182/377 (48%), Gaps = 53/377 (14%)
Query: 51 QSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPE 110
+FT+SY ++ G + + A + +V FD+ PDSV++ +HGF+ SQI IIR P
Sbjct: 55 HNFTVSYLVDSLGLATKVAESISMKVSFDNKGNPDSVLSLLRSHGFTDSQISNIIRTFPR 114
Query: 111 LLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPSD 167
LL+ D K+L PKLQF+ S G S++ TV+ P +L + + ++FV+ +D
Sbjct: 115 LLILDAEKSLAPKLQFLQSIGASSSELTETVSAVPKILGKRKGKSLSRYYDFVKVIIEAD 174
Query: 168 -----EKAIDCVLFGSNIITIDQWKSKVNLLL--DMGVSPTNIYILLRTRPNMLRCADLK 220
EK + GS Q NLL+ +MGV ++ LL + + C K
Sbjct: 175 KSSKLEKLCHSLPEGSK-----QENKIRNLLVLREMGVPQRLLFSLLISDAGDV-CGKEK 228
Query: 221 LKEAVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDA--------------FKTW- 265
KE++++ +GF P+ F AL + + K +A FK W
Sbjct: 229 FKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIENKFNACKRLGLAVDDVWAMFKKWP 288
Query: 266 --------------------GWSEDAVLLAFKREPRFMLYSIKKLNAVMSFWVGHLGWDP 305
G+S D L+ KR P+ + YS + + F V + W
Sbjct: 289 NILTKSEKKIENSVETFLGLGFSRDEFLMMVKRFPQCIGYSTELMKTKTEFLVTEMNWPL 348
Query: 306 SVLLAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKD-ASLSAPFFMTEKSFLQKFVKSF 364
+ ++P + G+SLEKR VPR +V+K L+S+GL++ + +S+ T + FL +V+
Sbjct: 349 KAVASIPQVLGYSLEKRTVPRCNVIKVLISKGLLESELPPISSVLTSTSEVFLYMYVRKH 408
Query: 365 EEEE-TSRILSLYRGGR 380
++++ + +++++ G R
Sbjct: 409 DDKQLVAELMAIFTGDR 425
>AT1G61990.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22911453-22912697 FORWARD
LENGTH=414
Length = 414
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 174/362 (48%), Gaps = 59/362 (16%)
Query: 51 QSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPE 110
++FT+SY ++ G S + A + +V F+D PDSV++ F ++GF+ SQI II P
Sbjct: 51 KNFTVSYLVDSLGLSKKLAESISRKVSFEDKVNPDSVLSLFRSYGFTDSQISTIITDYPL 110
Query: 111 LLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLL-RQSLENYIIPAFEFVRTFCPS 166
LLV D K L KLQ + S+G S+I V+ P +L ++S+ Y ++ V+ +
Sbjct: 111 LLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGKKSITVY----YDAVKDIIVA 166
Query: 167 DEKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCA----DLKLK 222
D + + GS I V+ L ++G+ P+ + + L + C D LK
Sbjct: 167 DTSSSYELPQGSQGNKIRN----VSALRELGM-PSRLLLPLLVSKSQPVCGKENFDASLK 221
Query: 223 EAVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAV---------- 272
+ VE +GF P+ T F AL M + + KV F++ G++ D V
Sbjct: 222 KVVE----MGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSV 277
Query: 273 -------------------------LLAFKREPRFMLYSIKKLNAVMSFWVGHLGWDPSV 307
L+ KR P + YS++ + F V + W +
Sbjct: 278 LKVSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNA 337
Query: 308 LLAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKDASL---SAPFFMTEKSFLQKFVKSF 364
L+ P +FG+S+EKR++PR ++L+ LLS+GL++K + L S+ T++ FL ++V
Sbjct: 338 LVLHPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKH 397
Query: 365 EE 366
E
Sbjct: 398 NE 399
>AT3G46950.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr3:17289452-17290804 FORWARD
LENGTH=450
Length = 450
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 138/266 (51%), Gaps = 31/266 (11%)
Query: 41 FSTT--SHSSDKQS-FTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFS 97
FS+T SS K S FT+SY + G + + A + +V F+D PDSV+ ++GF
Sbjct: 38 FSSTIAKDSSPKGSTFTVSYLVESLGLTKKLAETISKKVTFEDKVNPDSVLNLLRSNGFK 97
Query: 98 ISQIHIIIRRLPELLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYII 154
SQI IIR P LLV D K+L PKLQF+ S+G S+++ V+ P +L + E +
Sbjct: 98 DSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVS 157
Query: 155 PAFEFVRTF----------CPSDEKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIY 204
++FV+ CP +K G+ I I ++L ++GV ++
Sbjct: 158 LYYDFVKDIMQDGKSLCISCPEGKK-------GNRIRNI-------SVLRELGVPQKLLF 203
Query: 205 ILLRTRPNMLRCADLKLKEAVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKT 264
LL +R + C K +E+++++ +GF P+K+ F AL M + + KV+ +K
Sbjct: 204 SLLISRYQPV-CGKEKFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKR 262
Query: 265 WGWSEDAVLLAFKREPRFMLYSIKKL 290
G+SE + FK+ P F+ +S KK+
Sbjct: 263 LGFSEAEIWAIFKKWPYFLKFSEKKI 288
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 114/225 (50%), Gaps = 14/225 (6%)
Query: 163 FCPSDEKAIDC--VLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLK 220
F P+ K ++ V++ + TI++ KVN+ +G S I+ + + P L+ ++ K
Sbjct: 231 FDPAKSKFVEALHVVYEMSEKTIEE---KVNVYKRLGFSEAEIWAIFKKWPYFLKFSEKK 287
Query: 221 LKEAVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKV----DAFKTWGWSEDAVLLAF 276
+ E LK G + ++L R + + K+ + F G+S D +
Sbjct: 288 IILMFETLKKCGLVEEEI---ISVLKSRPQCIRSSEQKILDSIEMFLGLGFSRDDFKMMV 344
Query: 277 KREPRFMLYSIKKLNAVMSFWVGHLGWDPSVLLAVPALFGFSLEKRLVPRASVLKYLLSR 336
KR P YS + L V + W ++ +P + G+SLEKR+VPR++V+K L+S+
Sbjct: 345 KRYPCCTAYSGETLRKKFEVLVKMMNWPLEAVVMIPTVLGYSLEKRIVPRSNVIKALMSK 404
Query: 337 GLM-KKDASLSAPFFMTEKSFLQKFVKSFEEEETSRILSLYRGGR 380
GL+ ++ +S+ T++ FL+++V ++ ++++++ GR
Sbjct: 405 GLIGSENPPISSVLVCTDQEFLKRYVMK-HDKLVPKLMAIFNRGR 448
>AT1G56380.2 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:21101327-21102701 FORWARD
LENGTH=399
Length = 399
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 175/376 (46%), Gaps = 60/376 (15%)
Query: 53 FTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPELL 112
T+SY ++ G + A V D P+SV+ ++ F+ SQI II PELL
Sbjct: 28 LTVSYLVDSVGIPIKFAESILKEVSSKDKCNPNSVLNLLRSYDFTDSQISSIITTDPELL 87
Query: 113 VFDPTKTLLPKLQFIASK---GSDIVTTVTKSPYLLRQSLENYIIPAFEFVRTF------ 163
+ D +L PKL+F+ S+ S + VT+ P +LR E +I ++FV+T
Sbjct: 88 MEDAENSLCPKLKFLESREILSSRLNDIVTRVPKILRMEEEKSMITYYDFVKTITLTSSR 147
Query: 164 ------C---PSDEKAIDCVL-----------FGSNIITI----DQWKSKVNLLLDMGVS 199
C P E +I V+ F + ++ + + +VN+ +G
Sbjct: 148 SDFYKVCELYPYIESSIRKVIEMGFDPFAPKIFDATVVVCTLSNETLEERVNIYKTLGFD 207
Query: 200 PTNIYILLRTRPNMLRCADLKLKEAVEELKGLG---------FHPSKTAFSFALLAKRAM 250
+++ + + P L ++ K+ ++ E LK G F S F+ L
Sbjct: 208 VRDVWEMFKKCPTFLNISEKKITQSFETLKKCGLVEEEVISMFQKSPQCIDFSELD---- 263
Query: 251 VKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLYSIKK-LNAVMSFWVGHLGWDPSVLL 309
+ N++ K G E+ VL FKR P+ + +S KK LNAV +F D +++
Sbjct: 264 ITQNFEF----LKGCGLVEEEVLSMFKRYPQCIGFSEKKILNAVETFLGQGFSKDEVMMM 319
Query: 310 -------AVPALFGFSLEKRLVPRASVLKYLLSRGLMKKD-ASLSAPFFMTEKSFLQKFV 361
++P + FS+EK +VPR +V+K L S+ L+K + +S+ + ++ FL+++V
Sbjct: 320 VNREGVVSIPVVLEFSMEKMIVPRCNVIKALTSKRLLKTEVSSMFSVLICPDEVFLERYV 379
Query: 362 KSFEEEE-TSRILSLY 376
+++E ++S++
Sbjct: 380 SKHDDQELVDELMSIF 395
>AT1G56380.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:21101374-21102701 FORWARD
LENGTH=388
Length = 388
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 175/376 (46%), Gaps = 60/376 (15%)
Query: 53 FTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPELL 112
T+SY ++ G + A V D P+SV+ ++ F+ SQI II PELL
Sbjct: 17 LTVSYLVDSVGIPIKFAESILKEVSSKDKCNPNSVLNLLRSYDFTDSQISSIITTDPELL 76
Query: 113 VFDPTKTLLPKLQFIASK---GSDIVTTVTKSPYLLRQSLENYIIPAFEFVRTF------ 163
+ D +L PKL+F+ S+ S + VT+ P +LR E +I ++FV+T
Sbjct: 77 MEDAENSLCPKLKFLESREILSSRLNDIVTRVPKILRMEEEKSMITYYDFVKTITLTSSR 136
Query: 164 ------C---PSDEKAIDCVL-----------FGSNIITI----DQWKSKVNLLLDMGVS 199
C P E +I V+ F + ++ + + +VN+ +G
Sbjct: 137 SDFYKVCELYPYIESSIRKVIEMGFDPFAPKIFDATVVVCTLSNETLEERVNIYKTLGFD 196
Query: 200 PTNIYILLRTRPNMLRCADLKLKEAVEELKGLG---------FHPSKTAFSFALLAKRAM 250
+++ + + P L ++ K+ ++ E LK G F S F+ L
Sbjct: 197 VRDVWEMFKKCPTFLNISEKKITQSFETLKKCGLVEEEVISMFQKSPQCIDFSELD---- 252
Query: 251 VKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLYSIKK-LNAVMSFWVGHLGWDPSVLL 309
+ N++ K G E+ VL FKR P+ + +S KK LNAV +F D +++
Sbjct: 253 ITQNFEF----LKGCGLVEEEVLSMFKRYPQCIGFSEKKILNAVETFLGQGFSKDEVMMM 308
Query: 310 -------AVPALFGFSLEKRLVPRASVLKYLLSRGLMKKD-ASLSAPFFMTEKSFLQKFV 361
++P + FS+EK +VPR +V+K L S+ L+K + +S+ + ++ FL+++V
Sbjct: 309 VNREGVVSIPVVLEFSMEKMIVPRCNVIKALTSKRLLKTEVSSMFSVLICPDEVFLERYV 368
Query: 362 KSFEEEE-TSRILSLY 376
+++E ++S++
Sbjct: 369 SKHDDQELVDELMSIF 384
>AT1G62010.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22915886-22917133 FORWARD
LENGTH=415
Length = 415
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 165/349 (47%), Gaps = 53/349 (15%)
Query: 77 RFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPELLVFDPTKTLLPKLQFIASKG---SD 133
+ D DSV+ ++GF+ SQI IIR +L+ + +L KLQF+ S+G S+
Sbjct: 63 KLTDKGNSDSVLDLLRSYGFTDSQISSIIRSDSRVLIDNDATSLGSKLQFLQSRGASSSE 122
Query: 134 IVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPSD-----EKAIDCVLFGSNIITIDQWKS 188
+ V+ P +L + + ++F++ +D EK + G+ I I
Sbjct: 123 LTEVVSTVPKILGKREGKSLSRYYDFIKVIIEADKSSKYEKISHSLAQGNKIRNI----- 177
Query: 189 KVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVEELKGLGFHPSKTAFSFALLAKR 248
+L ++GV + +LL ++ + C K +++++ +GF P+ + F AL
Sbjct: 178 --LVLRELGVPQKRLLLLLISKSQPV-CGKEKFDASLKKVVEMGFDPTTSTFVHALHMLY 234
Query: 249 AMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLYSIKKL-NAVMSFW---------- 297
M + K+ +++ G+S D V FK+ PR + +S KK+ N++ +F
Sbjct: 235 QMSDKTIEEKIRVYRSVGFSVDDVWAMFKKWPRSLTHSEKKVANSIETFLGLGFSRDVFM 294
Query: 298 ------------------------VGHLGWDPSVLLAVPALFGFSLEKRLVPRASVLKYL 333
V + W + ++P + G+SLEKR VPR +V+K L
Sbjct: 295 MMFKRFPPCIGYSTEAVKKKTEFLVKEMNWPVKAVASIPQVLGYSLEKRTVPRCNVIKVL 354
Query: 334 LSRGLMKKD-ASLSAPFFMTEKSFLQKFVKSFEEEE-TSRILSLYRGGR 380
+S+GL++ + +S+ T +SFL +V ++++ + +++++ G R
Sbjct: 355 MSKGLLESELPPMSSVLTSTSESFLNLYVSKHDDKQLVAELMAIFTGNR 403
>AT5G64950.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:25953887-25955062 FORWARD
LENGTH=391
Length = 391
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 154/333 (46%), Gaps = 13/333 (3%)
Query: 58 FTNTCGFSHQAALKAANRV-RFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPELLVFDP 116
F GF A+ A R +P SVI ++ FS +QI IR P ++ ++
Sbjct: 44 FLRDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNV 103
Query: 117 TKTLLPKLQF---IASKGSDIVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPSDEKAIDC 173
K L PKL+F I GS + V+++ ++ SL +IP E +++ + +
Sbjct: 104 EKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPV 163
Query: 174 VLFGSNIITIDQWKS-----KVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVEEL 228
+L + + + + ++ L G+ + + LLR +P + ++ KL+ V
Sbjct: 164 ILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRA 223
Query: 229 KGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLYSIK 288
LGF + A+++ ++ + +D KV F G+SED + +R P + S
Sbjct: 224 LDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSED 283
Query: 289 KLNAVMSFWVGHLGWDPSVLLAVPALFGFSLEKRLVPRASVLKYL----LSRGLMKKDAS 344
KL F++ +G + L P + ++LEKR++PR VL+ L L KK +
Sbjct: 284 KLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKN 343
Query: 345 LSAPFFMTEKSFLQKFVKSFEEEETSRILSLYR 377
+ MTE++FL+K+V F +E +L Y+
Sbjct: 344 MVGIVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376
>AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970198-22971589 REVERSE
LENGTH=463
Length = 463
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/414 (24%), Positives = 179/414 (43%), Gaps = 85/414 (20%)
Query: 47 SSDKQSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIR 106
S +FT+SY ++ G + + A + +V F++ PD+V+ +H F+ SQI II
Sbjct: 53 SRKGNNFTVSYLVDSLGLASKLAESISMKVSFENKGNPDTVLNLLRSHEFTDSQISSIIS 112
Query: 107 RLPELLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRTF 163
P LLV D +L PKL + S+G S++ V+K P +L + I ++ V+
Sbjct: 113 DYPTLLVADAENSLGPKLLLMQSRGASSSELTEIVSKVPKILGMKGDKSIGRYYDIVKEI 172
Query: 164 CPSD-----EKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCAD 218
+D EK + GS + V +L D+GV ++ LL + ++ C
Sbjct: 173 IEADKSSKFEKLCHSLPEGSK---QENKIRNVLVLRDLGVPQRLLFSLLFSNHHVC-CGK 228
Query: 219 LKLKEAVEELKGLGFHPSKTAFSFALLAKRAM------------------VKSNWD---- 256
K +E++ ++ G+GF P+ F AL + V W+
Sbjct: 229 EKFEESLNKVVGMGFDPTTPKFVEALCIVYGLSDKRLEENFNVYKRFGLTVNDVWELFKK 288
Query: 257 -------------AKVDAFKTWGWSEDAVLLAFKREPRFMLYSIKKLNAVMSFWVGHLGW 303
+A K G ED VL FK+ P + S +++ M ++G LG+
Sbjct: 289 CPAFLGYSENRIIQTFEALKRCGLCEDEVLSVFKKNPLCLRASEQQILNSMETFIG-LGF 347
Query: 304 --DPSVLL--AVPALFGFS--------------------------------LEKRLVPRA 327
D V++ +P G+S +EKR VPR
Sbjct: 348 SRDEFVMMVKCLPQCIGYSAEMVKKKTEFVVKKMNWPLKVITLFPQVLGYSMEKRTVPRC 407
Query: 328 SVLKYLLSRGLMKKD-ASLSAPFFMTEKSFLQKFVKSFEEEETSRILSLYRGGR 380
+V+K L+S+GL+ + +++ T+++FL+++V +E+ ++S++ R
Sbjct: 408 NVIKALMSKGLLGSELPPMASVLACTDQTFLKRYVVEHDEKLVLELMSIFNQDR 461
>AT1G62085.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22948757-22950142 REVERSE
LENGTH=461
Length = 461
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 12/247 (4%)
Query: 52 SFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPEL 111
SF++SY ++ G + A + +V F+D PDSV++ +HGF+ SQI II P+L
Sbjct: 55 SFSVSYLVDSLGLPKKVAESISKKVSFEDKGNPDSVLSLLRSHGFTDSQISSIITDYPQL 114
Query: 112 LVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPSD- 167
LV D K++ PKLQF+ S+G S++ V+ P +L + + I ++FV+ +D
Sbjct: 115 LVADAEKSIGPKLQFLQSRGASRSELTHIVSTVPEILGKRGDKTISIYYDFVKEIIEADK 174
Query: 168 ----EKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKE 223
EK + GS + V +L ++GV P + L + C +E
Sbjct: 175 SSKFEKLCHSLPEGSK---QENKIRNVLVLRELGV-PQRLLFPLLISDHQPVCGKENFEE 230
Query: 224 AVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFM 283
+++++ +GF P+ + F AL +AKV+ K+ G+S V FK+ P F+
Sbjct: 231 SLKKVVEMGFDPTTSKFVKALRVVYRFRDKTIEAKVNVCKSLGFSVGDVWAMFKKCPSFL 290
Query: 284 LYSIKKL 290
+S K+
Sbjct: 291 NFSENKI 297
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 187 KSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVEELKGLGFHPSKTAFSFALLA 246
++KVN+ +G S +++ + + P+ L ++ K+ + E LK G ++L
Sbjct: 263 EAKVNVCKSLGFSVGDVWAMFKKCPSFLNFSENKIVQTWETLKKCGLLEDDV---LSVLK 319
Query: 247 KRAMVKSNWDAKV----DAFKTWGWSEDAVLLAFKREPRFMLYSIKKLNAVMSFWVGHLG 302
K + + K+ + F G+S D V + KR P+ ++ S + + F V +
Sbjct: 320 KFPQCINASEQKIMNSIETFLGLGFSRDEVAMIAKRFPQCLILSAETVKKKTEFLVKKMN 379
Query: 303 WDPSVLLAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKD-ASLSAPFFMTEKSFLQKFV 361
W +++ PA+ G+SLEKR +PR +V+K L+S+G + + +S+ T + FL ++V
Sbjct: 380 WPLKAVVSTPAVLGYSLEKRTIPRCNVIKALMSKGSLGSELPGMSSVLVCTNEEFLCRYV 439
Query: 362 KSFEEEE-TSRILSLYRGGR 380
K+ ++++ +++++ G R
Sbjct: 440 KNHDDKKIVPELMAIFTGDR 459
>AT1G61960.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22902239-22903612 FORWARD
LENGTH=457
Length = 457
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 13/248 (5%)
Query: 51 QSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPE 110
+FT+SY ++ G + + A + +V F++ PDSV++ T++GF+ SQI II P
Sbjct: 51 NNFTVSYLVDSLGLTTKLAESISKKVSFEERRNPDSVLSLLTSYGFTKSQISSIITIYPR 110
Query: 111 LLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPSD 167
LL D K++ PKLQ + S+G S++ V+ P +L + I ++FV+ +D
Sbjct: 111 LLALDAEKSIAPKLQSLQSRGASSSELTQIVSTVPKILGKRGHKSITVYYDFVKDIIEAD 170
Query: 168 -----EKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLK 222
EK G+ I +++L ++GV+ ++ LL + + C + +
Sbjct: 171 KSSSYEKLCHSFPQGNKKNKIRN----ISVLRELGVAQRLLFPLLISDGQPV-CGKERFE 225
Query: 223 EAVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRF 282
E+++++ +GF P T F AL M + KV+ +K G+ V FK+ P F
Sbjct: 226 ESLKKVVEMGFDPETTKFVEALRVIYRMSDKTIEEKVNVYKRLGFGVADVWAIFKKWPSF 285
Query: 283 MLYSIKKL 290
+ YS KK+
Sbjct: 286 LSYSEKKI 293
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 24/189 (12%)
Query: 187 KSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVEELKGLGF-----------HP 235
+ KVN+ +G +++ + + P+ L ++ K+ E LK G HP
Sbjct: 259 EEKVNVYKRLGFGVADVWAIFKKWPSFLSYSEKKITHTFETLKSCGLLKHEVLLLLKKHP 318
Query: 236 SKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLYSIKKLNAVMS 295
S ++ +V S ++ F G+S D + KR P+ + Y+ + +
Sbjct: 319 KCICSS-----EQKIVNS-----IETFLGLGFSRDEFAMMVKRYPQCIDYTAETVKKKTE 368
Query: 296 FWVGHLGWDPSVLLAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKDAS---LSAPFFMT 352
F V ++ W L+++P +FG+SLEKR VPR +V+K L+S+GLMK + +S+ T
Sbjct: 369 FIVKNMNWPLEALVSIPQVFGYSLEKRTVPRCNVIKTLISKGLMKDGSEAPPMSSVLTST 428
Query: 353 EKSFLQKFV 361
+++FL+++V
Sbjct: 429 DQAFLRRYV 437
>AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22958094-22959482 REVERSE
LENGTH=462
Length = 462
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 140/282 (49%), Gaps = 11/282 (3%)
Query: 51 QSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLPE 110
++FT+SY ++ G + + A + +V F + PD V++ F ++GF+ SQI II P
Sbjct: 51 KNFTVSYLVDSLGLATKLAESISKKVSFVNKGNPDLVLSLFRSYGFTNSQISSIITDYPR 110
Query: 111 LLVFDPTKTLLPKLQFIASKGS---DIVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPSD 167
LL+ D K+L KLQF+ S+G+ ++ V+ P +L + ++FV+ +D
Sbjct: 111 LLLIDAEKSLDIKLQFLESRGASSPELTQIVSTVPKILGMKEGKSLGRYYDFVKEIIEAD 170
Query: 168 EKAIDCVLFGSNIITIDQWKSK---VNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEA 224
K+ + ++ +K V++L D+GV ++ LL + + C +E+
Sbjct: 171 -KSSKYETLCQPLPEANRQGNKIRNVSVLRDLGVPQKLLFSLLISDAQPV-CGKENFEES 228
Query: 225 VEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFML 284
++++ +GF P+ + F AL A + +V+ +K +G++ + V FK+ P F+
Sbjct: 229 LKKVVEMGFDPTTSKFVQALRAVYRFTDKTIEERVNVYKGFGFAVEDVWAMFKKCPYFLN 288
Query: 285 YSIKKLNAVMSFW--VGHLGWDP-SVLLAVPALFGFSLEKRL 323
S KK+ + G L + SVL P G S +K L
Sbjct: 289 SSEKKIGQTIETLKKCGLLEDEVISVLKKYPQCIGTSEQKIL 330
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 103/203 (50%), Gaps = 12/203 (5%)
Query: 187 KSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVEELKGLGFHPSKTAFSFALLA 246
+ +VN+ G + +++ + + P L ++ K+ + +E LK G + ++L
Sbjct: 260 EERVNVYKGFGFAVEDVWAMFKKCPYFLNSSEKKIGQTIETLKKCGLLEDEV---ISVLK 316
Query: 247 KRAMVKSNWDAKV----DAFKTWGWSEDAVLLAFKREPRFMLYSIKKLNAVMSFWVGHLG 302
K + K+ + F G+S D + KR P+ ++ S + + + F V +
Sbjct: 317 KYPQCIGTSEQKILNSIEIFLGLGFSRDEFITMVKRFPQCLILSAETVKKKIEFVVKKMN 376
Query: 303 WDPSVLLAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKDAS----LSAPFFMTEKSFLQ 358
W +++ P + G++LEKR VPR +V++ L+S+ L+ S +S+ T++ FL+
Sbjct: 377 WPLKDVVSNPTVLGYNLEKRTVPRCNVIEALMSKRLLGDTGSELPPMSSVLVCTDELFLK 436
Query: 359 KFVKSFEEEE-TSRILSLYRGGR 380
++V++ ++E ++++Y GR
Sbjct: 437 RYVRNHGDKELVLELMTIYTRGR 459
>AT5G23930.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:8074625-8075998 REVERSE
LENGTH=457
Length = 457
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 9/244 (3%)
Query: 50 KQSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIRRLP 109
+++FT+SY ++ G + + A + + FD+ PDSV+ ++GF SQI II P
Sbjct: 53 RKTFTVSYLIDSLGLTTKLAESISMKANFDEKGNPDSVLKLLRSYGFKDSQISSIISTYP 112
Query: 110 ELLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPS 166
L+ +P KTL KL F+ G S++ V+K P +L + +I +++V+
Sbjct: 113 RFLIENPEKTLRAKLHFLKLNGASSSELTEIVSKVPKILGKRGGKWISHYYDYVKEILQD 172
Query: 167 DEKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVE 226
+ + V++L +GV + LL +R + C + +E+V+
Sbjct: 173 QDSSSSSSKRKQT-----NRNRNVSVLRKLGVPQRLLLNLLISRAKPV-CGKERFEESVK 226
Query: 227 ELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLYS 286
++ +GF P F AL + + KV+A+ G S + V FK+ P + YS
Sbjct: 227 KIVEMGFDPKSPKFVNALYVFYELSDKTIEEKVNAYIRLGLSVNEVWAVFKKWPFSLKYS 286
Query: 287 IKKL 290
K +
Sbjct: 287 EKNI 290
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 187 KSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVEELKGLGFHPSKTAFSFALLA 246
+ KVN + +G+S ++ + + P L+ ++ + + E LK +G T L+
Sbjct: 256 EEKVNAYIRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFETLKRVGL----TKEEVCLVV 311
Query: 247 KR--AMVKSNWDAKVDAFKTW---GWSEDAVLLAFKREPRFMLYSIKKLNAVMSFWVGHL 301
K+ V ++ + V + KT+ G+++D VL+ KR P+ + + + F V +
Sbjct: 312 KKYPECVGTSEEKIVKSVKTFLELGFTKDEVLMIIKRHPQCIGLAADSVKKKTEFLVKTM 371
Query: 302 GWDPSVLLAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKDASLSAPFFMTEKSFLQKFV 361
GW V+ + P + GFSLEK ++PR +V+K L+S GL+ + ++S+ + FL+ FV
Sbjct: 372 GWPLKVVASTPIVLGFSLEKFVLPRCNVIKALMSNGLIGEMPAISSVLTSPKLKFLKLFV 431
Query: 362 KSFEE 366
+ ++
Sbjct: 432 EKHQD 436
>AT1G62490.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:23130405-23131533 REVERSE
LENGTH=334
Length = 334
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 38/248 (15%)
Query: 47 SSDKQSFTLSYFTNTCGFSHQAALKAANRVRFDDANKPDSVIAFFTNHGFSISQIHIIIR 106
S ++FT+SY ++ G + A + + RF+D PDSV++ +HGF++SQI I
Sbjct: 93 SQKGKNFTVSYLVDSLGLPKKLAESISKKFRFEDKANPDSVLSLLRSHGFTVSQISI--- 149
Query: 107 RLPELLVFDPTKTLLPKLQFIASKGSDIVTTVTKSPYLLRQSLENYIIPAFEFVRTFCPS 166
P+LL KTL F+ ++SLE +E T C S
Sbjct: 150 --PKLLGKRGHKTLSLYYDFV------------------KESLEADKSSKYE---TLCQS 186
Query: 167 DEKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVE 226
+ ++ K V++L ++G+ P + L C + +++
Sbjct: 187 FPQG-----------NLENKKRNVSVLRELGM-PHKLLFPLLISVGQPVCGKDRFNTSLK 234
Query: 227 ELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLYS 286
++ +GF P+ F AL M + KV+ +K G++ + V + FK+ P + YS
Sbjct: 235 KVVEMGFDPTTAKFVKALHVSYEMNDKTIEEKVNVYKMLGFAVEDVWVIFKKWPYSLKYS 294
Query: 287 IKKLNAVM 294
+K+ +
Sbjct: 295 EEKITQTI 302
>AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active 15
| chr5:21988544-21990183 FORWARD LENGTH=500
Length = 500
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 11/242 (4%)
Query: 104 IIRRLPELLVFDPTKTLLPKLQFIAS-KGSDIVTTVT---KSPYLLRQSLENYIIPAFEF 159
II R P +L D L+P++ FI + G D T T + P +L S+E ++ EF
Sbjct: 234 IIARRPVILNSDLDSQLIPRVDFIRNLSGEDDFATGTVLRRLPAILSYSVE-HMNGQVEF 292
Query: 160 VRTFCP-SDEKAIDCVLFGSNIITIDQ---WKSKVNLLLDMGVSPTNIYILLRTRPNMLR 215
+++F + E+ V N+I+ + + ++ L + G ++ L P +L
Sbjct: 293 LKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLILA 352
Query: 216 CADLKLKEAVEELKGLGFHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLA 275
++ L + L +G+ +FA+ A N + + ++G S + +L
Sbjct: 353 LSENNLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAM 412
Query: 276 FKREPRFMLYSIKKLNAVMSFWVGHLGWDPSVLLAVPALFGFSLEKRLVPRASVLKYLLS 335
+ P+ + Y+ L + + + ++G + LLA PA G+ L+ R+ R + L S
Sbjct: 413 STKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHRYE--EKLKS 470
Query: 336 RG 337
RG
Sbjct: 471 RG 472
>AT2G36000.2 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:15117181-15118333 FORWARD
LENGTH=318
Length = 318
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 123 KLQFIASKGSDIVTTVTKSPYLLRQSLE--------------NYIIPAFEFVRTFCPSDE 168
KL ++ S G D +T + + P LL +L N+ + F + + CP
Sbjct: 76 KLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCP--- 132
Query: 169 KAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPT-NIYILLRTRPNMLRCA-DLKLKEAVE 226
+ + L I I LL ++GV ++ LR RP +L C+ D +L+ +
Sbjct: 133 ELLTSPLTSHTIPVI------TFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLY 186
Query: 227 ELKGLG-FHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLY 285
L+ +G P K + + +V ++D F+ G+S + FKR P+ Y
Sbjct: 187 FLQRIGILDPHKHTYLLSCSVDNKLV-----PRIDYFEKLGFSRRSATAMFKRFPQLFNY 241
Query: 286 SI-KKLNAVMSFWVGHLGWDPSVLLAVPALFGFSLEKRLVPR 326
SI + + + + +G D +L P F FSLE R+ PR
Sbjct: 242 SIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPR 283
>AT2G36000.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:15117181-15118182 FORWARD
LENGTH=333
Length = 333
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 123 KLQFIASKGSDIVTTVTKSPYLLRQSLE--------------NYIIPAFEFVRTFCPSDE 168
KL ++ S G D +T + + P LL +L N+ + F + + CP
Sbjct: 76 KLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCP--- 132
Query: 169 KAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPT-NIYILLRTRPNMLRCA-DLKLKEAVE 226
+ + L I I LL ++GV ++ LR RP +L C+ D +L+ +
Sbjct: 133 ELLTSPLTSHTIPVI------TFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLY 186
Query: 227 ELKGLG-FHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLY 285
L+ +G P K + + +V ++D F+ G+S + FKR P+ Y
Sbjct: 187 FLQRIGILDPHKHTYLLSCSVDNKLV-----PRIDYFEKLGFSRRSATAMFKRFPQLFNY 241
Query: 286 SI-KKLNAVMSFWVGHLGWDPSVLLAVPALFGFSLEKRLVPR 326
SI + + + + +G D +L P F FSLE R+ PR
Sbjct: 242 SIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPR 283
>AT1G74120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:27871923-27873260 REVERSE
LENGTH=445
Length = 445
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 34/240 (14%)
Query: 163 FCPSDEKAIDCVLFGSNIITIDQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCA-DLKL 221
FC S I G ++ + + K+ L+ +G++ NI P +L + +L
Sbjct: 159 FCDSTVSRILSSFPGVLLVNEIEIRRKIEFLVGIGIARDNIERFFHVFPEVLGIGTETRL 218
Query: 222 KEAVEELKGLGF-----------HPSKTAFSFALLAK--------------------RAM 250
K ++E +GF P L +
Sbjct: 219 KPLLDEFMKMGFSKDDVKKEIAREPRVLGLELGELPRCLELINTLKCREVIRVSIISEGA 278
Query: 251 VKSNWDAK--VDAFKTWGWSEDAVLLAFKREPRFMLYSIKKLNAVMSFWVGHLGWDPSVL 308
++ ++ K VD +G +EPR +LY I+ + + F +G+ + L
Sbjct: 279 FRAGFEVKLRVDCLCKYGLIRRDAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCL 338
Query: 309 LAVPALFGFSLEKRLVPRASVLKYLLSRGLMKKDASLSAPFFMTEKSFLQKFVKSFEEEE 368
VP G +L+K++VPR +V+ YL +G + D L + K F +V + E E
Sbjct: 339 ADVPEYLGVNLQKQIVPRYNVIDYLKLKGGLGCDIGLKGLIKPSMKRFYNLYVMPYPECE 398
>AT1G79220.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:29799227-29800426 FORWARD
LENGTH=399
Length = 399
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 184 DQWKSKVNLLLDMGVSPTNIYILLRTRPNMLRCADLKLKEAVEELKGLGFHPSKTAFSFA 243
D+ K + +G S ++ +L +RP ++ + E E ++ G F +
Sbjct: 183 DKIKPAIEYYKGLGFSQQDLVAMLISRPTLIPRTNFN-NEKFEYIEKTGVTRESKMFKYV 241
Query: 244 LLAKRAMVKSNWDAKVDAFKTWGWSEDAVLLAFKREPRFMLYSIKKLNAVMSFWVGHLGW 303
+ + KV + +G+SE+ + + + P + S++K+ M+F + +
Sbjct: 242 AVIIGVSRMETIEEKVRNLEKFGFSEEEIWHLYGKCPILLSLSVEKVQRNMTFVIASMKL 301
Query: 304 DPSVLLAVPALFGFSLEKRLVPRASVLKYLLSRGL--MKKDASLSAPFFMTEKSFLQKFV 361
++ P L +LE RL PRA ++K +L L + K+ S+ M+EK FL+ +V
Sbjct: 302 PAHSVVKHPCLLLLNLESRLKPRADLVKRVLEMRLKPLIKEVSIFRAVRMSEKRFLKVYV 361
Query: 362 KSFEEEETSRILSLYRGGR 380
++ + ++ Y +
Sbjct: 362 MCHPQDIATELMEFYEKSK 380
>AT4G14605.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:8378815-8380564 FORWARD
LENGTH=493
Length = 493
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 23/262 (8%)
Query: 100 QIHIIIRRLPELLVFDPTKTLLPKLQFIASKG---SDIVTTVTKSPYLLRQSLENYIIPA 156
QI I R+ + + P ++F+ G SDI T + K P + SL + + P
Sbjct: 212 QIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPT 271
Query: 157 FEFVRTFCPSDEKAIDCVLFGSNIITIDQWK--SKVNLLLDMGVSPTNIYILLRTRPNML 214
F+ T + + I+T + K S V L G++ I +L PN++
Sbjct: 272 MAFLETLGIDKNQWAKIISRFPAILTYSRQKLTSTVEFLSQTGLTEEQIGRILTRCPNIM 331
Query: 215 R-CADLKLKEAVEELKGLG------FHPSKTAFSFALLAKRAMVKSNWDAKVDAFKTWGW 267
+ KL+ +E + L H F + ++SN + F G+
Sbjct: 332 SYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLS-------IESNLKPVTEFFLEKGF 384
Query: 268 SEDAVLLAFKREPRFMLYSIKKLNAVMSFW--VGHLGWDPSVLLAVPALFGFSLEKRLVP 325
D + + R +S+K+ VM W + + S L+ P FG+SL++R+ P
Sbjct: 385 GLDEIGIMISRYGALYTFSLKE--NVMPKWDYFQTMDYPKSELVKFPQFFGYSLQERIKP 442
Query: 326 RASVLKYLLSRGLMKKDASLSA 347
R +++ R L+ + SLS
Sbjct: 443 RYELVQRSGVRLLLNQVLSLSG 464