Miyakogusa Predicted Gene

Lj4g3v2310320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2310320.1 Non Chatacterized Hit- tr|C5YFR4|C5YFR4_SORBI
Putative uncharacterized protein Sb06g015250
OS=Sorghu,44.44,7e-17,seg,NULL,CUFF.50745.1
         (453 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49100.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   134   2e-31
AT3G06868.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    89   4e-18

>AT5G49100.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:19897700-19898890 REVERSE LENGTH=396
          Length = 396

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 121/293 (41%), Gaps = 19/293 (6%)

Query: 164 IILKRSKSTATPRRRHSLIDAEDDTVDFSPRKRHGFWSFLYXXXXXXXXXXXXXXXXXXF 223
           I+ KRS+ST T +  +   D+     D SPRKR+GFWSF +                   
Sbjct: 120 IVYKRSQSTRTTKTTYG--DS-----DLSPRKRNGFWSFFHLYSSKQHGSSKKVGNFHQP 172

Query: 224 RDSNHGSTPNPRILAINXXXXXXXXXXXXKLKEKCCSGSSLGRKS-DIVVEEDNNXXXXX 282
                  T       +             K +     GSS  R   D++VEED +     
Sbjct: 173 ISQTETKTELAETTTVGSSSSSSASSSMSK-RVVGGGGSSSNRNGIDVIVEEDGSPNIEV 231

Query: 283 XXXXXXFERKVXXXXXXXXXXXXXXXDFFERISTGFGDCTLRRVESQREGKTKTGENHHH 342
                  ERKV               DFFERI+ GFGDCTLRRVESQREG    G     
Sbjct: 232 TPS----ERKVSRSRSVGCGSRSFSGDFFERITNGFGDCTLRRVESQREGNNNKGNKVSS 287

Query: 343 N-HRCMKERVRCGGLFSGFM-MTXXXXXXXXXXXXXXXXADDAAAMNSGKSTAVALSHGG 400
           N    ++E VRCGG+F GFM MT                A+     N             
Sbjct: 288 NPSNGVREMVRCGGIFGGFMIMTSSSSSSSSSSWVSSSSAEHHHHHNHNMGHGGGG---- 343

Query: 401 RGRSWGWAFASPMRAFXXXXXXXXXXRDIIRDANDKNATPNLSAIPSLLAARS 453
           R RSWGW+FASPMRAF          R I      KN TPNL AIPSLL+ RS
Sbjct: 344 RNRSWGWSFASPMRAFTSSSYSGKRGRTISDSTTSKNTTPNLGAIPSLLSVRS 396



 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 30/36 (83%), Gaps = 1/36 (2%)

Query: 15 VEDHDMGDGMQCIDHPFRNNNPGGICALCLQEKLGK 50
           +D DMGDGMQCI+HPF   NPGGICA CLQEKLGK
Sbjct: 4  AKDQDMGDGMQCINHPF-TKNPGGICAFCLQEKLGK 38


>AT3G06868.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G49100.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr3:2167872-2168981
           FORWARD LENGTH=369
          Length = 369

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 70/147 (47%), Gaps = 20/147 (13%)

Query: 309 DFFERISTGFGDCTLRRVESQREG-KTKTGENHHHNHRCMKERVRCGGLFSGFMMTXXXX 367
           DFFERIS GFGDC LRR+ESQRE  K  +          M E V+CGG+F GFM+     
Sbjct: 241 DFFERISNGFGDCALRRIESQREATKVISNGGGGEAADAMSEMVKCGGIFGGFMIMTSSS 300

Query: 368 XXXXXXXXXXXXADDAAAMNSGKSTAVALSHGGRGRSWGWAFASPMRAFXXXXXXXXXXR 427
                         +               H    R+WGWAFASPMRA           R
Sbjct: 301 TTSSTTSSTVDHHHN---------------HKMGNRNWGWAFASPMRA---KATATHRGR 342

Query: 428 DIIRD-ANDKNATPNLSAIPSLLAARS 453
            I    A++KN + NL +IPSLLA +S
Sbjct: 343 TITESTADNKNTSSNLDSIPSLLALKS 369



 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 1/35 (2%)

Query: 16 EDHDMGDGMQCIDHPFRNNNPGGICALCLQEKLGK 50
          +  DMG+GMQCI HP+   NPGGICALCLQEKLGK
Sbjct: 6  DQQDMGEGMQCITHPY-TKNPGGICALCLQEKLGK 39