Miyakogusa Predicted Gene

Lj4g3v2296130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2296130.1 Non Chatacterized Hit- tr|I1P1Y6|I1P1Y6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,25.41,0.000000000006,mTERF,Mitochodrial transcription termination
factor-related; seg,NULL; Mitochondrial termination
fac,NODE_40986_length_2753_cov_111.773705.path1.1
         (302 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34620.1 | Symbols:  | Mitochondrial transcription terminatio...   353   1e-97
AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial transcrip...   220   8e-58
AT2G36000.1 | Symbols:  | Mitochondrial transcription terminatio...   187   9e-48
AT2G36000.2 | Symbols:  | Mitochondrial transcription terminatio...   187   1e-47
AT3G18870.1 | Symbols:  | Mitochondrial transcription terminatio...   161   6e-40
AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription ter...   106   2e-23
AT4G14605.1 | Symbols:  | Mitochondrial transcription terminatio...    97   1e-20
AT1G78930.1 | Symbols:  | Mitochondrial transcription terminatio...    94   1e-19
AT5G55580.1 | Symbols:  | Mitochondrial transcription terminatio...    87   1e-17
AT4G02990.1 | Symbols:  | Mitochondrial transcription terminatio...    84   9e-17
AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription term...    84   1e-16
AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription term...    84   1e-16
AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription term...    84   2e-16
AT2G44020.1 | Symbols:  | Mitochondrial transcription terminatio...    82   3e-16
AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active...    64   1e-10
AT1G74120.1 | Symbols:  | Mitochondrial transcription terminatio...    57   2e-08
AT5G64950.1 | Symbols:  | Mitochondrial transcription terminatio...    52   4e-07
AT1G61960.1 | Symbols:  | Mitochondrial transcription terminatio...    50   2e-06

>AT2G34620.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:14577196-14578203 FORWARD
           LENGTH=303
          Length = 303

 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 210/257 (81%), Gaps = 1/257 (0%)

Query: 41  QNHPLYTPTTHAKLSLQFKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSK 100
            +HPL+T      ++LQ KEKILCLE+MG+D+G+ALS NP L +A ++SIQS++ FL SK
Sbjct: 39  HSHPLFT-VADQTVTLQMKEKILCLELMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSK 97

Query: 101 GIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVR 160
           GI   DLPRI GMCPKILTSD++TEL PVF FL +DL VP+  FR+VI KCPRLL SSV 
Sbjct: 98  GIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVE 157

Query: 161 DQLKPALFYLKRLGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLR 220
           DQLKPALFYL+RLG KDL  LAYQD +LLVS+VE TLIPKL +LE++GFS+ EA  ++LR
Sbjct: 158 DQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILR 217

Query: 221 CPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINL 280
           CPALFTFSIENNF+PK +YF  E+  KLE LKEFPQYFAFSLE RIKPRH+E ++ G+ L
Sbjct: 218 CPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLEL 277

Query: 281 PLSVMLKSTDEEFRELI 297
           PLS+MLKSTDEEF +L+
Sbjct: 278 PLSLMLKSTDEEFEQLL 294


>AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial
           transcription termination factor family protein |
           chr2:900094-900945 REVERSE LENGTH=283
          Length = 283

 Score =  220 bits (561), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 115/237 (48%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 58  FKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKI 117
           F+EK++ L+ + VD  +AL  NP LR+A + S+ S+ + L S G+    + RI  M P +
Sbjct: 32  FREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDL 91

Query: 118 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 177
           LTSD ++E+ PV  FL +++ + + +  K I++CPRLL SSV  QL+PAL +LK LGF  
Sbjct: 92  LTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 151

Query: 178 LTPLAYQDSVLLVSNVERTLIPKLEYL-ENLGFSKGEARSLVLRCPALFTFSIENNFEPK 236
              +  +++VLLVSNVERTLIPK+EYL E LGF++ E   +V+R PAL T+S++NN  PK
Sbjct: 152 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 211

Query: 237 FEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEF 293
            E+F  EM   ++ELK FPQYF+FSLE +IKPRH  + + GI +PLS MLK +D +F
Sbjct: 212 VEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 268


>AT2G36000.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:15117181-15118182 FORWARD
           LENGTH=333
          Length = 333

 Score =  187 bits (474), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 153/242 (63%), Gaps = 7/242 (2%)

Query: 60  EKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQH--KDLPRIFGMCPKI 117
           EK++ L+ +G+D    ++++P L +  + +++S++ ++ +  I    +D  R+  MCP++
Sbjct: 75  EKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 134

Query: 118 LTSDIKTELNPVFDFLLHDLKVPD-YNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFK 176
           LTS + +   PV  FLL ++ V   ++ R+ + + PRLL  SV  QL+P L++L+R+G  
Sbjct: 135 LTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIL 194

Query: 177 DLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPK 236
           D     ++ + LL  +V+  L+P+++Y E LGFS+  A ++  R P LF +SI  N+EPK
Sbjct: 195 D----PHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPK 250

Query: 237 FEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFREL 296
            +Y   EMGR + E+ EFPQYF+FSLENRIKPRH      G+  PL VMLK+ +  FR+ 
Sbjct: 251 LKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDT 310

Query: 297 IK 298
           ++
Sbjct: 311 LE 312


>AT2G36000.2 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:15117181-15118333 FORWARD
           LENGTH=318
          Length = 318

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 153/242 (63%), Gaps = 7/242 (2%)

Query: 60  EKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQH--KDLPRIFGMCPKI 117
           EK++ L+ +G+D    ++++P L +  + +++S++ ++ +  I    +D  R+  MCP++
Sbjct: 75  EKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 134

Query: 118 LTSDIKTELNPVFDFLLHDLKVPD-YNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFK 176
           LTS + +   PV  FLL ++ V   ++ R+ + + PRLL  SV  QL+P L++L+R+G  
Sbjct: 135 LTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIL 194

Query: 177 DLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPK 236
           D     ++ + LL  +V+  L+P+++Y E LGFS+  A ++  R P LF +SI  N+EPK
Sbjct: 195 D----PHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPK 250

Query: 237 FEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFREL 296
            +Y   EMGR + E+ EFPQYF+FSLENRIKPRH      G+  PL VMLK+ +  FR+ 
Sbjct: 251 LKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDT 310

Query: 297 IK 298
           ++
Sbjct: 311 LE 312


>AT3G18870.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr3:6508515-6509339 REVERSE
           LENGTH=274
          Length = 274

 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 11/247 (4%)

Query: 51  HAKLSLQFKEKILCLEVMGVDAGRALSQNPDLR--TATMESIQSIISFLLSKGIQHKDLP 108
           + K     +E +  L  +G+     + QNP L      +  I S ++ L SKGI  +D P
Sbjct: 29  YLKFQTSHRENLRHLSSLGI-----VPQNPRLAPPANDLSVILSAVNLLKSKGISDEDFP 83

Query: 109 RIFGMCPKIL--TSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPA 166
           R+  +CP++   T DI ++L+PVFDFL  +L       R +I  CP +L S V   L+P 
Sbjct: 84  RLVFLCPQLFSPTFDI-SKLDPVFDFLTGELGASAEESRGLIVNCPNILFSDVEYCLRPT 142

Query: 167 LFYLKRLGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFT 226
           L YLK LG ++L   +  ++ +L + VE+ L  K+ +L+++GF   EA  +  R PA+F 
Sbjct: 143 LVYLKELGVRNLNRASKTNAHVLNTRVEK-LRAKMRFLKSIGFEHEEAARVCGRIPAIFG 201

Query: 227 FSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVML 286
           +S+E+N  PKFE+   +M R+LEELK+FPQYFAFSL  RI+PRH  + +  + + LS ML
Sbjct: 202 YSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRML 261

Query: 287 KSTDEEF 293
              D++F
Sbjct: 262 MWGDQKF 268


>AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription
           termination factor family protein | chr2:9270886-9273307
           FORWARD LENGTH=641
          Length = 641

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 71  DAGRALSQNPDLRTATMES-IQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPV 129
           + GR L+  P L   ++E   + ++ +    GI  + + RI  + P +   D++  + P 
Sbjct: 368 EVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPK 427

Query: 130 FDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPA-LFYLKRLGF--KDLTPLAYQDS 186
             FL  ++ +P+     ++ K P LLT+S+  +++P  +F L R G   KD+  +   D 
Sbjct: 428 VRFL-QEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDP 486

Query: 187 VLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGR 246
            LL  ++   L P + Y  +LG    +   ++   P L  ++++N   PK+ Y    M R
Sbjct: 487 ALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDN-LRPKYRYLRRTMIR 545

Query: 247 KLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELIK 298
            L++L EFP++F++SLE RI PRH  +V+  +N  L  ML  TDEEF   ++
Sbjct: 546 PLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVR 597


>AT4G14605.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:8378815-8380564 FORWARD
           LENGTH=493
          Length = 493

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 109/206 (52%), Gaps = 4/206 (1%)

Query: 88  ESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKV 147
           ++++  ++FL + GI      +I    P ILT   + +L    +FL     + +    ++
Sbjct: 266 DNLKPTMAFLETLGIDKNQWAKIISRFPAILTYS-RQKLTSTVEFL-SQTGLTEEQIGRI 323

Query: 148 INKCPRLLTSSVRDQLKPALFYLKRLGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENL 207
           + +CP +++ SV D+L+P + Y + L   D+  L ++       ++E  L P  E+    
Sbjct: 324 LTRCPNIMSYSVEDKLRPTMEYFRSLNV-DVAVLLHRCPQTFGLSIESNLKPVTEFFLEK 382

Query: 208 GFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIK 267
           GF   E   ++ R  AL+TFS++ N  PK++YF   M     EL +FPQ+F +SL+ RIK
Sbjct: 383 GFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQ-TMDYPKSELVKFPQFFGYSLQERIK 441

Query: 268 PRHMEVVQCGINLPLSVMLKSTDEEF 293
           PR+  V + G+ L L+ +L  +  EF
Sbjct: 442 PRYELVQRSGVRLLLNQVLSLSGIEF 467


>AT1G78930.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:29678285-29680648 REVERSE
           LENGTH=591
          Length = 591

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 4/229 (1%)

Query: 67  VMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTEL 126
           V+ +D   A+ + P L   +  +++ ++      G++ K + ++    P++L    +  L
Sbjct: 348 VLKMDIDHAIRRWPLLLGCSASNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQEFL 407

Query: 127 NPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD--LTPLAYQ 184
             V    L DL        +++ +CP +   S+   L+  L +L R G        +  +
Sbjct: 408 KVVC--FLEDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKK 465

Query: 185 DSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEM 244
               L+ + ++T++P+L+YL  +G S+ E   ++ +   +  +SI+    PKFE+    M
Sbjct: 466 YPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSM 525

Query: 245 GRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEF 293
            + + E+ E+P+YF++SLE RIKPR   +    I   L  ML   DEEF
Sbjct: 526 EKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574


>AT5G55580.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:22515601-22517408 FORWARD
           LENGTH=496
          Length = 496

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 110/218 (50%), Gaps = 4/218 (1%)

Query: 62  ILCLEVMGVDAGRALSQNPDLRTATMES-IQSIISFLLSKGIQHKDLPRIFGMCPKILTS 120
           +L + V   D  R L + P +   T+E+ +++ ISFL+  GI +  + +I    P + + 
Sbjct: 226 LLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSY 285

Query: 121 DIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYL-KRLGF--KD 177
            ++  L P   +L+ ++ + + +  KV+   P++L   +         +L K LG     
Sbjct: 286 SVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDS 345

Query: 178 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 237
           +  +  +   LL  +++   +P++ +L ++G    +   ++     + + S+E+N +PK+
Sbjct: 346 VVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKY 405

Query: 238 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQ 275
            Y   E+  ++  L ++P Y + SL+ RI+PRH  +V+
Sbjct: 406 MYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVE 443


>AT4G02990.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:1322158-1323783 FORWARD
           LENGTH=541
          Length = 541

 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 41/270 (15%)

Query: 65  LEVMGVDAGRALSQNPDLRTATMESIQSI-ISFLLSKGIQHKDLPRIFGMCPKILTSDIK 123
           L++   D  R L + P++    +E   S  +++L+  G+  +++  I    P+IL   + 
Sbjct: 225 LDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVA 284

Query: 124 TELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFK------- 176
             + P+ ++L   L +P     ++I K P +L   + D +KP +  L+    +       
Sbjct: 285 RIIKPLVEYL-EVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSI 343

Query: 177 ----------DLTPLAYQDSVLLVSNV---------------------ERTLIPKLEYLE 205
                     DL P       LL S +                     E  ++  +++L 
Sbjct: 344 IAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDFLT 403

Query: 206 NLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENR 265
             GFS  + R +V+ CP +   ++    +  FEYF  EM R L++L +FP +F + LE+ 
Sbjct: 404 KCGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLEST 462

Query: 266 IKPRHMEVVQCGINLPLSVMLKSTDEEFRE 295
           +KPRH ++++ GI   L+ ML  +DE+F +
Sbjct: 463 VKPRHKKIIKKGIKCSLAWMLNCSDEKFEQ 492



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 11/196 (5%)

Query: 85  ATMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNF 144
            T + ++  + FL   G+  +D+       P +L   +K  + PV D+L   L V    F
Sbjct: 142 VTADVMKERVEFLHKLGLTIEDINNY----PLVLGCSVKKNMVPVLDYL-GKLGVRKSTF 196

Query: 145 RKVINKCPRLLTSSVRDQLKPALFYLKRLGFK--DLTPLAYQDSVLLVSNVERTLIPKLE 202
            + + + P++L SSV   L P + YL+ L  K  D+  +  +   +L   +E T+   + 
Sbjct: 197 TEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVA 256

Query: 203 YLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEE---LKEFPQYFA 259
           YL  +G ++ E   ++ R P +    +    +P  EY       +L     +++ P    
Sbjct: 257 YLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILG 316

Query: 260 FSLENRIKPRHMEVVQ 275
           F L++ +KP +++++Q
Sbjct: 317 FELDDTVKP-NVQILQ 331


>AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903904 FORWARD LENGTH=378
          Length = 378

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 123/253 (48%), Gaps = 11/253 (4%)

Query: 54  LSLQFKEKIL----CLEVMGVD---AGRALSQNPDLRTATMES-IQSIISFLLSKGIQHK 105
           L+L+  E+++    CL  +G +      A+++ P + + ++E  +  +++F  + G+   
Sbjct: 70  LTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPET 129

Query: 106 DLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKP 165
            L ++    P++++  I T+L  +  FL       D    KV+ K P L+  SV  +L+P
Sbjct: 130 QLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRP 189

Query: 166 ALFYLKR---LGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCP 222
              +LK    L    +  +      LL  +V + L P  +YL+  GF   +  ++V   P
Sbjct: 190 TTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYP 249

Query: 223 ALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPL 282
            +   S++N+ +P+  +    MGR ++E+  +P++F   L+ +++ R   V +  I+  L
Sbjct: 250 QILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNIDCSL 309

Query: 283 SVMLKSTDEEFRE 295
             ML    ++F E
Sbjct: 310 REMLDCNTKKFHE 322



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 92  SIISFLLSKGIQHKDLPRIFGMCPKI--LTSDIKTELNPVFDFLLHDLKVPDYNFRKVIN 149
           SI+ F   KG     + ++   C ++    SD+ +E    +D+L + + + +     +++
Sbjct: 8   SIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASE---NWDYLSNIVGIQERKLPYIVS 64

Query: 150 KCPRLLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENL 207
           +CP++LT  + ++L P +  L  LG   +++     +   +L  +VE  L P L + + L
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 208 GFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAG----EMGRKLEELKEFPQYFAFSLE 263
           G  + +   ++L  P L ++SI+        + A     + G   + L + P    +S++
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 264 NRIKP 268
            R++P
Sbjct: 185 KRLRP 189


>AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903784 FORWARD LENGTH=363
          Length = 363

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 123/253 (48%), Gaps = 11/253 (4%)

Query: 54  LSLQFKEKIL----CLEVMGVD---AGRALSQNPDLRTATMES-IQSIISFLLSKGIQHK 105
           L+L+  E+++    CL  +G +      A+++ P + + ++E  +  +++F  + G+   
Sbjct: 70  LTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPET 129

Query: 106 DLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKP 165
            L ++    P++++  I T+L  +  FL       D    KV+ K P L+  SV  +L+P
Sbjct: 130 QLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRP 189

Query: 166 ALFYLKR---LGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCP 222
              +LK    L    +  +      LL  +V + L P  +YL+  GF   +  ++V   P
Sbjct: 190 TTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYP 249

Query: 223 ALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPL 282
            +   S++N+ +P+  +    MGR ++E+  +P++F   L+ +++ R   V +  I+  L
Sbjct: 250 QILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNIDCSL 309

Query: 283 SVMLKSTDEEFRE 295
             ML    ++F E
Sbjct: 310 REMLDCNTKKFHE 322



 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 92  SIISFLLSKGIQHKDLPRIFGMCPKI--LTSDIKTELNPVFDFLLHDLKVPDYNFRKVIN 149
           SI+ F   KG     + ++   C ++    SD+ +E    +D+L + + + +     +++
Sbjct: 8   SIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASE---NWDYLSNIVGIQERKLPYIVS 64

Query: 150 KCPRLLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENL 207
           +CP++LT  + ++L P +  L  LG   +++     +   +L  +VE  L P L + + L
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 208 GFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAG----EMGRKLEELKEFPQYFAFSLE 263
           G  + +   ++L  P L ++SI+        + A     + G   + L + P    +S++
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 264 NRIKP 268
            R++P
Sbjct: 185 KRLRP 189


>AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903413 FORWARD LENGTH=333
          Length = 333

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 123/253 (48%), Gaps = 11/253 (4%)

Query: 54  LSLQFKEKIL----CLEVMGVD---AGRALSQNPDLRTATME-SIQSIISFLLSKGIQHK 105
           L+L+  E+++    CL  +G +      A+++ P + + ++E  +  +++F  + G+   
Sbjct: 70  LTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPET 129

Query: 106 DLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKP 165
            L ++    P++++  I T+L  +  FL       D    KV+ K P L+  SV  +L+P
Sbjct: 130 QLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRP 189

Query: 166 ALFYLKR---LGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCP 222
              +LK    L    +  +      LL  +V + L P  +YL+  GF   +  ++V   P
Sbjct: 190 TTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYP 249

Query: 223 ALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPL 282
            +   S++N+ +P+  +    MGR ++E+  +P++F   L+ +++ R   V +  I+  L
Sbjct: 250 QILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNIDCSL 309

Query: 283 SVMLKSTDEEFRE 295
             ML    ++F E
Sbjct: 310 REMLDCNTKKFHE 322



 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 92  SIISFLLSKGIQHKDLPRIFGMCPKI--LTSDIKTELNPVFDFLLHDLKVPDYNFRKVIN 149
           SI+ F   KG     + ++   C ++    SD+ +E    +D+L + + + +     +++
Sbjct: 8   SIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASE---NWDYLSNIVGIQERKLPYIVS 64

Query: 150 KCPRLLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENL 207
           +CP++LT  + ++L P +  L  LG   +++     +   +L  +VE  L P L + + L
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 208 GFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAG----EMGRKLEELKEFPQYFAFSLE 263
           G  + +   ++L  P L ++SI+        + A     + G   + L + P    +S++
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 264 NRIKP 268
            R++P
Sbjct: 185 KRLRP 189


>AT2G44020.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:18217737-18219260 REVERSE
           LENGTH=507
          Length = 507

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 129/276 (46%), Gaps = 42/276 (15%)

Query: 65  LEVMGVDAGRALSQNPDLRTATMESIQSI-ISFLLSKGIQHKDLPRIFGMCPKILTSDIK 123
           L+V   D G  L + P+L    +E   S  +++L+S G+  +D+  +    P +L   + 
Sbjct: 190 LDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVG 249

Query: 124 TELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFK-DLTPL- 181
           T + P+ D+L+  + +P     +++ K   ++  ++ + +KP +  L   G K +L PL 
Sbjct: 250 TMIKPLVDYLI-SIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLL 308

Query: 182 -AYQDSVL-----------------------------------LVSNVERTLIPKLEYLE 205
            A    +L                                   +VS  +  ++  +E+L 
Sbjct: 309 IAQYPQILGLPVKAKMSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKPIEFLL 368

Query: 206 NLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENR 265
              F   +   +V+RCP +    +E   +  + ++  EMGR ++EL E+P+YF +SLE+R
Sbjct: 369 GRAFQVEDIAKMVVRCPQILCSRVEL-MKNSYYFYKTEMGRPMKELVEYPEYFTYSLESR 427

Query: 266 IKPRHMEVVQCGINLPLSVMLKSTDEEFRELIKQGD 301
           IKPR+ ++   GI   L+  L  +D+ F E + QG+
Sbjct: 428 IKPRYQKLQSKGIRSSLNWFLNCSDQRFEERL-QGN 462


>AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active 15
           | chr5:21988544-21990183 FORWARD LENGTH=500
          Length = 500

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 113/228 (49%), Gaps = 13/228 (5%)

Query: 72  AGRALSQNPDLRTATMESIQSIISFLLS-KGIQHKDLPRIFGMCPKILTSDIKTELNPVF 130
            G  L + P + + ++E +   + FL S  G+  + + +I  + P ++++  + +L P  
Sbjct: 268 TGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRI 327

Query: 131 DFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKDLTP-LAYQDSVLL 189
           +FL  +         K ++K P +L  S  + L   L +L ++G+K  T  LA+    + 
Sbjct: 328 EFL-KECGFDSPGMFKFLSKAPLILALS-ENNLSHKLGFLVKIGYKHRTKELAFAMGAVT 385

Query: 190 VS---NVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGR 246
            +   N++R +   L Y    G S  +  ++  + P +  ++   + E K EY    MGR
Sbjct: 386 RTSSDNMQRVIGLYLSY----GLSFEDILAMSTKHPQVLQYNY-TSLEEKLEYLIEYMGR 440

Query: 247 KLEELKEFPQYFAFSLENRIKPRHMEVVQC-GINLPLSVMLKSTDEEF 293
           ++EEL  FP +  + L++RIK R+ E ++  G N+ L+ +L  + E F
Sbjct: 441 EVEELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERF 488


>AT1G74120.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:27871923-27873260 REVERSE
           LENGTH=445
          Length = 445

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 8/217 (3%)

Query: 57  QFKEKILCLEVMGV---DAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGM 113
           +F E +  L+ +G       R LS  P +       I+  I FL+  GI   ++ R F +
Sbjct: 146 KFNECVRVLKSLGFCDSTVSRILSSFPGVLLVNEIEIRRKIEFLVGIGIARDNIERFFHV 205

Query: 114 CPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRL 173
            P++L    +T L P+ D  +  +     + +K I + PR+L   +  +L   L  +  L
Sbjct: 206 FPEVLGIGTETRLKPLLDEFM-KMGFSKDDVKKEIAREPRVLGLEL-GELPRCLELINTL 263

Query: 174 GFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNF 233
             +++  ++        +  E  L  +++ L   G  + +A  +V + P +  + IE + 
Sbjct: 264 KCREVIRVSIISEGAFRAGFEVKL--RVDCLCKYGLIRRDAFKVVWKEPRVILYEIE-DI 320

Query: 234 EPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRH 270
           E K E+    MG  +  L + P+Y   +L+ +I PR+
Sbjct: 321 EKKIEFLTNRMGFHINCLADVPEYLGVNLQKQIVPRY 357


>AT5G64950.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:25953887-25955062 FORWARD
           LENGTH=391
          Length = 391

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 19/216 (8%)

Query: 69  GVDAGRALSQNPDLRTA--------TMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTS 120
           G   G+ +SQN  +           T+E ++SI++       +H+DLP I   C  +L S
Sbjct: 121 GSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVA------PKHEDLPVILSRCGWLLLS 174

Query: 121 -DIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKDLT 179
            D    L P   +L     +       ++ + PR+   S  ++L+  +     LGF   +
Sbjct: 175 RDPNLFLLPNISYL-ETCGIVGSQLASLLRRQPRIFNLS-EEKLRGYVSRALDLGFTLNS 232

Query: 180 PLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEY 239
            +     + L S  E+T   K++     GFS+ E   ++ R P L   S E+     FE+
Sbjct: 233 RMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCS-EDKLTLGFEF 291

Query: 240 FAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQ 275
           +   MG + E L + P   +++LE R+ PR ++V+Q
Sbjct: 292 YLKRMGLEREALAKRPCVLSYNLEKRVIPR-LKVLQ 326


>AT1G61960.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22902239-22903612 FORWARD
           LENGTH=457
          Length = 457

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 12/114 (10%)

Query: 190 VSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLE 249
           + + E+ ++  +E    LGFS+ E   +V R P    ++ E   + K E+    M   LE
Sbjct: 321 ICSSEQKIVNSIETFLGLGFSRDEFAMMVKRYPQCIDYTAET-VKKKTEFIVKNMNWPLE 379

Query: 250 ELKEFPQYFAFSLENRIKPRHMEVVQCGINL----------PLSVMLKSTDEEF 293
            L   PQ F +SLE R  PR   V++  I+           P+S +L STD+ F
Sbjct: 380 ALVSIPQVFGYSLEKRTVPR-CNVIKTLISKGLMKDGSEAPPMSSVLTSTDQAF 432