Miyakogusa Predicted Gene
- Lj4g3v2290280.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2290280.1 Non Chatacterized Hit- tr|H3GI31|H3GI31_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,36.73,0.000000000000002,Tetratricopeptide
repeats,Tetratricopeptide repeat; TPR,Tetratricopeptide repeat;
TPR_REGION,Tetratr,CUFF.50708.1
(477 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16760.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 208 6e-54
AT3G16760.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 165 6e-41
AT4G30480.2 | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat (... 65 8e-11
AT3G25230.1 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 ... 57 2e-08
AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 ... 57 2e-08
AT5G09420.1 | Symbols: ATTOC64-V, MTOM64, TOC64-V, OM64, AtmtOM6... 53 6e-07
>AT3G16760.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5703213-5705080 FORWARD
LENGTH=475
Length = 475
Score = 208 bits (530), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 91/114 (79%), Positives = 107/114 (93%)
Query: 363 MDNYKQGQFADAIKWLSWAVILLEKAGDDAGSVEVLSCRASCYKEVGEYKKAVADCTKIL 422
+DN +QGQ+ADAIKWLSWAVIL+++AGD+AGS EVLS RASCYKEVGEYKKAVADCTK+L
Sbjct: 361 IDNQRQGQYADAIKWLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKKAVADCTKVL 420
Query: 423 ENNETNVSVLVQRALLYESMEKYKLGAEDLRNVLKIDPSNRVARSTIHRLVKMA 476
++++ NV++LVQRALLYESMEKYKLGAEDLR VLKIDP NR+ARST+HRL KMA
Sbjct: 421 DHDKKNVTILVQRALLYESMEKYKLGAEDLRMVLKIDPGNRIARSTVHRLTKMA 474
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 84/180 (46%), Gaps = 31/180 (17%)
Query: 1 MNSNYGRSNSNPQKTASSSPSVSLNNFNFDFDLGIGSNRPKSLIDQKXXXXXXXXXXXXX 60
MNSN+G+ +S + FDFDLG+GS++ + L
Sbjct: 1 MNSNFGKRSSGSTNS-------------FDFDLGLGSSQGRPL----NGQKSQTSSYSSS 43
Query: 61 XXXXXXXXQSKKPSWTHXXXXXXXX------XXXXSMAGDIFGKSWGSAQPSAPTIGIVN 114
Q KPSWTH SM GDI GK+WGSA S IGIVN
Sbjct: 44 NSQPRPAWQPGKPSWTHQPAPKQSTIRSEIGSGPTSMVGDIHGKTWGSASGSGSGIGIVN 103
Query: 115 KNPNLFGDLVXXXXXXXXXXXXXXTNVPLKNA----ASTTKTTSFSMGNMANSLPKTGNA 170
K+P+LFGDLV NVPLKNA AS + + +SMGN+ +SLPK+GN+
Sbjct: 104 KDPSLFGDLVGSAIGQGKSSR----NVPLKNAPPVSASGSSKSPYSMGNLGDSLPKSGNS 159
>AT3G16760.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5703213-5705080 FORWARD
LENGTH=456
Length = 456
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 84/91 (92%)
Query: 386 EKAGDDAGSVEVLSCRASCYKEVGEYKKAVADCTKILENNETNVSVLVQRALLYESMEKY 445
+AGD+AGS EVLS RASCYKEVGEYKKAVADCTK+L++++ NV++LVQRALLYESMEKY
Sbjct: 365 RQAGDEAGSAEVLSTRASCYKEVGEYKKAVADCTKVLDHDKKNVTILVQRALLYESMEKY 424
Query: 446 KLGAEDLRNVLKIDPSNRVARSTIHRLVKMA 476
KLGAEDLR VLKIDP NR+ARST+HRL KMA
Sbjct: 425 KLGAEDLRMVLKIDPGNRIARSTVHRLTKMA 455
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 84/180 (46%), Gaps = 31/180 (17%)
Query: 1 MNSNYGRSNSNPQKTASSSPSVSLNNFNFDFDLGIGSNRPKSLIDQKXXXXXXXXXXXXX 60
MNSN+G+ +S + FDFDLG+GS++ + L
Sbjct: 1 MNSNFGKRSSGSTNS-------------FDFDLGLGSSQGRPL----NGQKSQTSSYSSS 43
Query: 61 XXXXXXXXQSKKPSWTHXXXXXXXX------XXXXSMAGDIFGKSWGSAQPSAPTIGIVN 114
Q KPSWTH SM GDI GK+WGSA S IGIVN
Sbjct: 44 NSQPRPAWQPGKPSWTHQPAPKQSTIRSEIGSGPTSMVGDIHGKTWGSASGSGSGIGIVN 103
Query: 115 KNPNLFGDLVXXXXXXXXXXXXXXTNVPLKNA----ASTTKTTSFSMGNMANSLPKTGNA 170
K+P+LFGDLV NVPLKNA AS + + +SMGN+ +SLPK+GN+
Sbjct: 104 KDPSLFGDLVGSAIGQGKSSR----NVPLKNAPPVSASGSSKSPYSMGNLGDSLPKSGNS 159
>AT4G30480.2 | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:14897500-14898937
FORWARD LENGTH=277
Length = 277
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 369 GQFADAIKWLSWAVILLEKAGDDAGSVEVLS-C---RASCYKEVGEYKKAVADCTKILEN 424
G + +A+ ++A+ L+++ + S+E+ S C R C+ ++G+ ++ + +CTK LE
Sbjct: 119 GLYEEALSKYAFALELVQELPE---SIELRSICYLNRGVCFLKLGKCEETIKECTKALEL 175
Query: 425 NETNVSVLVQRALLYESMEKYKLGAEDLRNVLKIDPSNRVARSTIHRLVKMA 476
N T LV+RA +E +E ++ DL+ +L++DPSN AR I RL +A
Sbjct: 176 NPTYNKALVRRAEAHEKLEHFEDAVTDLKKILELDPSNDQARKGIRRLEPLA 227
>AT3G25230.1 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 |
chr3:9188257-9191137 FORWARD LENGTH=551
Length = 551
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 370 QFADAIKWLSWAVILLEKAGDDAGSVEVLSCR---ASCYKEVGEYKKAVADCTKILENNE 426
++ A+K++ + E+ A +++V +C A+C ++ +YK+A CTK+LE
Sbjct: 422 RYEKAVKFIEYDTSFSEEEKKQAKALKV-ACNLNDAACKLKLKDYKQAEKLCTKVLELES 480
Query: 427 TNVSVLVQRALLYESMEKYKLGAEDLRNVLKIDPSNRVARSTIHRL 472
TNV L +RA Y + L D++ L+IDP+NR + RL
Sbjct: 481 TNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRL 526
>AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 |
chr3:9188257-9191175 FORWARD LENGTH=562
Length = 562
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 370 QFADAIKWLSWAVILLEKAGDDAGSVEVLSCR---ASCYKEVGEYKKAVADCTKILENNE 426
++ A+K++ + E+ A +++V +C A+C ++ +YK+A CTK+LE
Sbjct: 422 RYEKAVKFIEYDTSFSEEEKKQAKALKV-ACNLNDAACKLKLKDYKQAEKLCTKVLELES 480
Query: 427 TNVSVLVQRALLYESMEKYKLGAEDLRNVLKIDPSNRVARSTIHRL 472
TNV L +RA Y + L D++ L+IDP+NR + RL
Sbjct: 481 TNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRL 526
>AT5G09420.1 | Symbols: ATTOC64-V, MTOM64, TOC64-V, OM64, AtmtOM64 |
translocon at the outer membrane of chloroplasts 64-V |
chr5:2928316-2931750 FORWARD LENGTH=603
Length = 603
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 366 YKQGQFADAIKWLSWAVILLEKAGDDAGSVEVLSC-RASCYKEVGEYKKAVADCTKILEN 424
YK Q+ A+ + + A+ L G+ C RA+ + E+ +++A DCTK +
Sbjct: 499 YKGKQWNKAVNFYTEAIKL-------NGANATYYCNRAAAFLELCCFQQAEQDCTKAMLI 551
Query: 425 NETNVSVLVQRALLYESMEKYKLGAEDLRNVLKIDPSNRVARSTIHRLVK 474
++ NV ++R ES+ +YK A D R+ L ++P N+ A+ RL K
Sbjct: 552 DKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKRLRK 601