Miyakogusa Predicted Gene
- Lj4g3v2289240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2289240.1 Non Chatacterized Hit- tr|I1MRL9|I1MRL9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.58056
PE,87.96,0,UNCHARACTERIZED,NULL; Pumilio-like repeats,Pumilio
RNA-binding repeat; no description,Armadillo-like,CUFF.50701.1
(548 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16810.1 | Symbols: APUM24, PUM24 | pumilio 24 | chr3:5723436... 670 0.0
AT3G20250.1 | Symbols: APUM5, PUM5 | pumilio 5 | chr3:7059098-70... 64 2e-10
AT4G25880.1 | Symbols: APUM6, PUM6 | pumilio 6 | chr4:13155518-1... 56 7e-08
AT4G25880.2 | Symbols: APUM6, PUM6 | pumilio 6 | chr4:13155518-1... 53 7e-07
AT4G25880.3 | Symbols: APUM6, PUM6 | pumilio 6 | chr4:13155518-1... 52 8e-07
AT2G29190.2 | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071... 52 1e-06
AT2G29190.1 | Symbols: APUM2, PUM2 | pumilio 2 | chr2:12544260-1... 52 1e-06
>AT3G16810.1 | Symbols: APUM24, PUM24 | pumilio 24 |
chr3:5723436-5727539 REVERSE LENGTH=641
Length = 641
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/545 (61%), Positives = 430/545 (78%), Gaps = 16/545 (2%)
Query: 1 MRRHEIAKEDRAKLVTEALQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQP 60
MRR I KEDR+KL++EA++KMKGK+PEIA SHVSSRVLQTCVK CSQAE+D +F ELQP
Sbjct: 98 MRRRNIGKEDRSKLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQP 157
Query: 61 HFLNLAYNAYSVHLVKKMLDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANA 120
FLNLA N Y+VH ++KMLD ASK+QLA ISSLRGHVAPLLRH+ GS+VVEHAY L +A
Sbjct: 158 QFLNLASNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSA 217
Query: 121 AQKQQLLSELYSTELQLFKDLVSSKESRLLDIMSKLDLQKGSVLRHMASVIQPILEKGIV 180
AQKQ+LL+ELYSTELQLFK L +S E ++DI++KL LQKG+V RHM ++IQPILEKGIV
Sbjct: 218 AQKQELLAELYSTELQLFKGLTTSNEKTVVDIIAKLGLQKGAVNRHMTAIIQPILEKGIV 277
Query: 181 DHSILHRLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIGVLCVKYGSAKERKK 240
DH+I H+LL+EY TIA KTS A+++Q L+ LL+RM+ T+DG+++ +L +K+GSAKERKK
Sbjct: 278 DHTITHKLLIEYLTIADKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKERKK 337
Query: 241 IIKGLKEHIGKTAYHQYGCMVLVCILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPL 300
IIK +KEH+ K A+ Q+G MVL CI S+VDDTKL+TK+I+REL++ LK+LV+DKNGRRPL
Sbjct: 338 IIKAMKEHVKKMAFDQFGSMVLACIFSIVDDTKLVTKIIVRELEATLKDLVMDKNGRRPL 397
Query: 301 LQLLHPNCSRYFSPEDLASLNSSIPSLSLKDXXXXXXXXXXXKASLDDNESNEDKEVTVD 360
LQLLHPN SRY S +DLA+L+ S+PSL D + D + NE E T D
Sbjct: 398 LQLLHPNSSRYLSHDDLAALDLSVPSLCSMDKSETS-------SKTKDTDGNEIGEETKD 450
Query: 361 EVNKDKTSVDDSDLAES-----GKKDPLVRRQELLINSGLAESLLDVCTESVGELIRSNF 415
E ++ T + SD E+ GKKDPLVRRQELL+NSGLAE L+DVC E+ E ++S F
Sbjct: 451 E--QEDTVAEHSDHEENVTAMGGKKDPLVRRQELLVNSGLAERLIDVCVENAEEFLQSKF 508
Query: 416 GKEVLYEVATGGSGGILHPTLDDKINSLHKAIASLAALPKSEDSEE--EHVLENFHSNRT 473
G EV+YEVA GGS GIL P+L +K+ L++AI+S+AA PK ++SE+ EH+LENFHS+RT
Sbjct: 509 GNEVMYEVAIGGSDGILCPSLSEKLCELYEAISSVAAEPKPQESEKDSEHILENFHSSRT 568
Query: 474 IRKLILDCPSFASTLWEEALKGKCESWAHGHSCKVISAFLESPDSEVQKLAKKELQPLID 533
IR+L+L+ P FAS L+++AL GKC SWA GH K++SAF+E+ D +V+++AK ELQ L++
Sbjct: 569 IRRLVLNRPGFASILFKKALSGKCRSWAQGHCSKILSAFVETEDVQVREMAKTELQVLVN 628
Query: 534 NGILK 538
G LK
Sbjct: 629 EGTLK 633
>AT3G20250.1 | Symbols: APUM5, PUM5 | pumilio 5 |
chr3:7059098-7062660 REVERSE LENGTH=961
Length = 961
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 36/270 (13%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L + G++ E + SR +Q ++HCS E+ +VF E+ P L + + ++++K
Sbjct: 626 LSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKF 685
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
+++ + Q + L G + L M G V++ A E+ + QK +L+ EL L+
Sbjct: 686 IEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCV 745
Query: 139 KD----------LVSSKESRLLDIMSKLDLQKGSVLRHMAS--VIQPILEKGIVD---HS 183
+D + S R+ +++ Q ++ H VIQ ILE D H
Sbjct: 746 RDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHC 805
Query: 184 ILHRLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKDGAKIGVLCVKYGSAKERKKIIK 243
I+ +L F +A + Q + ++ G ER++II+
Sbjct: 806 IIDEILESAFALAHDQYGNYVTQHV---------------------LERGKPDERRQIIE 844
Query: 244 GLKEHIGKTAYHQYGCMVLVCILSVVDDTK 273
L ++ + + H+Y V+ L D T+
Sbjct: 845 KLTGNVVQMSQHKYASNVVEKCLEHADSTE 874
>AT4G25880.1 | Symbols: APUM6, PUM6 | pumilio 6 |
chr4:13155518-13159078 FORWARD LENGTH=861
Length = 861
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 111/258 (43%), Gaps = 34/258 (13%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L + G I E + SR +Q +++C E+ AVF E+ PH L + + ++++K
Sbjct: 530 LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKF 589
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
+ + Q L G + PL M G V++ A ++ Q+ +L EL ++
Sbjct: 590 FEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCV 649
Query: 139 KDL------------VSSKESRLLDIMSKLDLQKGSVLRHMASVIQPILEKGIVDHSILH 186
+D + + + + + + S+ + VIQ +LE+ DH
Sbjct: 650 RDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQC-- 707
Query: 187 RLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKD--GAKIGVLCVKYGSAKERKKIIKG 244
R + E EI++ + + +KD G + ++ G+++ER++I +
Sbjct: 708 RFITE-----------EILESV-------CVLSKDQYGNYVTQHVLEKGTSEERERIGRK 749
Query: 245 LKEHIGKTAYHQYGCMVL 262
L HI + + H++ V+
Sbjct: 750 LSGHIVQLSLHKFASNVI 767
>AT4G25880.2 | Symbols: APUM6, PUM6 | pumilio 6 |
chr4:13155518-13159078 FORWARD LENGTH=855
Length = 855
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 116/264 (43%), Gaps = 38/264 (14%)
Query: 17 EALQKMKGK---IPEIAGSHVS-SRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSV 72
E L+ KG+ + +I G V SR +Q +++C E+ AVF E+ PH L + +
Sbjct: 518 EELKSGKGRRFDLSDITGHIVEFSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGN 577
Query: 73 HLVKKMLDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYS 132
++++K + + Q L G + PL M G V++ A ++ Q+ +L EL
Sbjct: 578 YVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDG 637
Query: 133 TELQLFKDL------------VSSKESRLLDIMSKLDLQKGSVLRHMASVIQPILEKGIV 180
++ +D + + + + + + S+ + VIQ +LE+
Sbjct: 638 QVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSH 697
Query: 181 DHSILHRLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKD--GAKIGVLCVKYGSAKER 238
DH R + E EI++ + + +KD G + ++ G+++ER
Sbjct: 698 DHQC--RFITE-----------EILESV-------CVLSKDQYGNYVTQHVLEKGTSEER 737
Query: 239 KKIIKGLKEHIGKTAYHQYGCMVL 262
++I + L HI + + H++ V+
Sbjct: 738 ERIGRKLSGHIVQLSLHKFASNVI 761
>AT4G25880.3 | Symbols: APUM6, PUM6 | pumilio 6 |
chr4:13155518-13159070 FORWARD LENGTH=858
Length = 858
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 116/264 (43%), Gaps = 38/264 (14%)
Query: 17 EALQKMKGK---IPEIAGSHVS-SRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSV 72
E L+ KG+ + +I G V SR +Q +++C E+ AVF E+ PH L + +
Sbjct: 518 EELKSGKGRRFDLSDITGHIVEFSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGN 577
Query: 73 HLVKKMLDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYS 132
++++K + + Q L G + PL M G V++ A ++ Q+ +L EL
Sbjct: 578 YVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDG 637
Query: 133 TELQLFKDL------------VSSKESRLLDIMSKLDLQKGSVLRHMASVIQPILEKGIV 180
++ +D + + + + + + S+ + VIQ +LE+
Sbjct: 638 QVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSH 697
Query: 181 DHSILHRLLLEYFTIAGKTSVAEIIQQLSSPLLVRMIGTKD--GAKIGVLCVKYGSAKER 238
DH R + E EI++ + + +KD G + ++ G+++ER
Sbjct: 698 DHQC--RFITE-----------EILESVC-------VLSKDQYGNYVTQHVLEKGTSEER 737
Query: 239 KKIIKGLKEHIGKTAYHQYGCMVL 262
++I + L HI + + H++ V+
Sbjct: 738 ERIGRKLSGHIVQLSLHKFASNVI 761
>AT2G29190.2 | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071
REVERSE LENGTH=972
Length = 972
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 61/122 (50%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L ++ G + E + SR +Q ++ + E++ V+EE+ PH L L + + ++++K
Sbjct: 632 LAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKF 691
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
++ Q L +V PL M G V++ A E+ + QK +++ EL ++
Sbjct: 692 FEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCV 751
Query: 139 KD 140
+D
Sbjct: 752 RD 753
>AT2G29190.1 | Symbols: APUM2, PUM2 | pumilio 2 |
chr2:12544260-12548071 REVERSE LENGTH=972
Length = 972
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 61/122 (50%)
Query: 19 LQKMKGKIPEIAGSHVSSRVLQTCVKHCSQAERDAVFEELQPHFLNLAYNAYSVHLVKKM 78
L ++ G + E + SR +Q ++ + E++ V+EE+ PH L L + + ++++K
Sbjct: 632 LAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKF 691
Query: 79 LDNASKKQLAGFISSLRGHVAPLLRHMVGSVVVEHAYELANAAQKQQLLSELYSTELQLF 138
++ Q L +V PL M G V++ A E+ + QK +++ EL ++
Sbjct: 692 FEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCV 751
Query: 139 KD 140
+D
Sbjct: 752 RD 753