Miyakogusa Predicted Gene

Lj4g3v2289100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2289100.1 Non Chatacterized Hit- tr|H3AWU6|H3AWU6_LATCH
Uncharacterized protein OS=Latimeria chalumnae
GN=WDR4,22.86,3e-18,Quinoprotein alcohol
dehydrogenase-like,Quinonprotein alcohol dehydrogenase-like; WD40,WD40
repeat; ,CUFF.50860.1
         (616 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11240.1 | Symbols:  | transducin family protein / WD-40 repe...   666   0.0  
AT1G73720.1 | Symbols: SMU1 | transducin family protein / WD-40 ...    55   1e-07
AT1G15420.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Small-subu...    52   2e-06
AT5G50120.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    50   3e-06

>AT5G11240.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:3582949-3586782 FORWARD LENGTH=615
          Length = 615

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/582 (58%), Positives = 426/582 (73%), Gaps = 26/582 (4%)

Query: 6   DIRGILTAFNPSLDLFAVTAGDGRIKIWDTLKGQLQNEFADITSTHAATIALK---GHLS 62
           +I+ +LT+F+P+LD  A++ GDGRIKIWDT+KGQ+Q EFADI ST    I  K   GHLS
Sbjct: 5   NIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIYTKVGKGHLS 64

Query: 63  VDYTCIHWFSFERKRKRKHTSSLLVLGTGSGDVLALDVAAGQLAWRIADCHPGGVRAISS 122
           VDYTC+ W S E+K+KRK  +S+LVLGTG GDVLALDVA+GQL WRI+DCHPGGV A+SS
Sbjct: 65  VDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSS 124

Query: 123 SANGSSIYTAGADGMVCVIDFMSGNLLEKFKASTKAVSCMSVSSDGKTLATASAQLKIFN 182
           SA  S IY+ GADGMVC ID  SGNL+ KFKASTK VS + VS DGK L TAS QLK FN
Sbjct: 125 SAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASTQLKTFN 184

Query: 183 CSNHKKIQKLSGHPGPVRCMVFTEDDKYILSSAVGERYVAVWRVDGAKKQSASCVLAMEH 242
           CS+ KKIQK +GHPG VRC+ FTED KY+LSSAVGERY+AVW+ DGAKKQSASCVLA+EH
Sbjct: 185 CSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVWKTDGAKKQSASCVLALEH 244

Query: 243 PAVFLDSRCIDRGEDDEAGICVLAISEVGLCYLWFGNSIEELRDAKPTKISLSLEDISSR 302
           P VF+DS     GE +E G+ VLAISE+G+CY W+G+++EEL +A PTK++L+  D S +
Sbjct: 245 PPVFVDS----WGETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATADSSLK 300

Query: 303 NFKGALPAIYAAKLQGIQKPASGQVFLVHGSLVKPSFQKILLHSGTDIKLNVSHDGVLLP 362
            +K +LP I+AAKLQGI KP S   F+  G LVKPSFQK++L  G D+ LN S DG+LLP
Sbjct: 301 PYKSSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGNDLVLNASKDGILLP 360

Query: 363 TSQVLAKTKKGTGVQ-RVTALDRANAEDALLPIPKVFDSHXXXXXXXXXXXXXVIHDSLR 421
            +Q ++K+ K  GVQ +VT LDRA+AEDALLPI +V D H                  L 
Sbjct: 361 ITQSVSKSSKRQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSV------------QLH 408

Query: 422 SSKADFLEIEDDMVQDEIDVTCMEDRMRSLGMLKSESDCASNFELCSSLLKGIDLEATLP 481
           SS  D   + D    D ++   MED++RSLG+L   +D   N    +S++ G DL+A LP
Sbjct: 409 SSDKDTYMV-DQSHADHVETFSMEDKLRSLGILGG-TDEHKNLSY-ASIIDGTDLKAYLP 465

Query: 482 MKKIRAAVLSMVPSEVFKLLEVLLATWQSRSSSGKYVLPWIYSILVNHGHNIIAQE-SGP 540
            KK+++AVLSM PS  FK LE L A WQ+R+  G+++LPWIYSI+VNH H I++QE    
Sbjct: 466 PKKLKSAVLSMEPSTAFKTLEALAAMWQTRACGGRHLLPWIYSIMVNHSHYIMSQEPKNQ 525

Query: 541 RLLDSLHKITNSRGCALQPLLQLSGRLQLVTSQIDKA--SQT 580
           +LL++L KIT SRG ALQ LLQLSGRLQLVT+QI+KA  SQT
Sbjct: 526 QLLNTLVKITKSRGTALQQLLQLSGRLQLVTAQINKAAGSQT 567


>AT1G73720.1 | Symbols: SMU1 | transducin family protein / WD-40
           repeat family protein | chr1:27725059-27729722 FORWARD
           LENGTH=511
          Length = 511

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 27/193 (13%)

Query: 14  FNPSLDLFAVTAGDGRIKIWDTLKGQLQNEFADITSTHAATIALKGH----LSVDYTCIH 69
           F+P     A ++ DG I++WD + G+L+ +       + A  +   H    L +D++   
Sbjct: 221 FSPDGQFLASSSVDGFIEVWDYISGKLKKDLQ-----YQADESFMMHDDPVLCIDFS--- 272

Query: 70  WFSFERKRKRKHTSSLLVLGTGSGDVLALDVAAGQLAWRIADCHPGGVRAISSSANGSSI 129
                        S +L  G+  G +    +  G +  R  D H  GV ++S S +GS +
Sbjct: 273 -----------RDSEMLASGSQDGKIKIWRIRTG-VCIRRFDAHSQGVTSLSFSRDGSQL 320

Query: 130 YTAGADGMVCVIDFMSGNLLEKFKASTKAVSCMSVSSDGKTLATASAQ--LKIFNCSNHK 187
            +   D    +    SG LL++F+  T  V+    +SDG  + TAS+   +K+++     
Sbjct: 321 LSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTD 380

Query: 188 KIQKLSGHPGPVR 200
            +Q     P P+R
Sbjct: 381 CLQTFKP-PPPLR 392


>AT1G15420.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Small-subunit
           processome, Utp12 (InterPro:IPR007148); Has 764 Blast
           hits to 656 proteins in 193 species: Archae - 0;
           Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85;
           Viruses - 23; Other Eukaryotes - 223 (source: NCBI
           BLink). | chr1:5301794-5303296 REVERSE LENGTH=278
          Length = 278

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query: 485 IRAAVLSMVPSEVFKLLEVLLATWQSRSSSGKYVLPWIYSILVNHGHNIIAQESGPRLLD 544
           I  +V  +  +EV KLL  LL   QSR +     +PWI S+L+ H   I++QES    L+
Sbjct: 133 IANSVAKLNSAEVLKLLNALLPILQSRGAILACTIPWIKSLLLTHSSGIMSQESSLLALN 192

Query: 545 SLHKITNSRGCALQPLLQLSGRLQLV 570
           +++++  SR   +   +++S  L L+
Sbjct: 193 TMYQLIESRVSTIHTAVEVSSGLDLI 218


>AT5G50120.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:20382630-20383796 REVERSE LENGTH=388
          Length = 388

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 13/127 (10%)

Query: 113 HPGGVRAIS-SSANGSSIYTAGADGMVCVIDFMSGN---LLEKFKASTKAVSCMSVSSDG 168
           H  G+ A++ S  NGS +++ G+DG + V +   G    ++   +  T++V C++V SD 
Sbjct: 258 HNSGINALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAVVSDI 317

Query: 169 KTLATASAQLKIFNCS--NHKKIQKLSGHPGPVRCMV--FTEDDK-----YILSSAVGER 219
               +A   ++++ CS  ++  +  L GH GPV+C+   F +  K     Y + S   + 
Sbjct: 318 LCSGSADKTVRLWKCSAKDYSCLAMLEGHLGPVKCLTGAFRDSRKADEASYHIYSGGLDS 377

Query: 220 YVAVWRV 226
            V VW+V
Sbjct: 378 QVKVWQV 384