Miyakogusa Predicted Gene

Lj4g3v2267660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2267660.1 CUFF.50667.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases ...   180   2e-46
AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | RNA polymerases ...   179   4e-46

>AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases
           M/15 Kd subunit | chr3:5794526-5795699 FORWARD
           LENGTH=114
          Length = 114

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 94/114 (82%)

Query: 1   MSSMKFCRRCNNILYPKEDTEQKVLYYACRHCNHQEIADDNIVYRNQIRQSVGRNPQAEQ 60
           MS+MKFCR CNNILYPKED EQK+L YACR+C+HQE+AD++ VYRN++  SV    Q   
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  NVAADPTLPRTKSVRCSQCNHGEAVFFQTTTRGEEGTTLVFVCCNPTCGHRWRD 114
           +VA+DPTLPRTK+VRCS+C H EAVFFQ T RGEEG TL FVCCNP CGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114


>AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | RNA polymerases
           M/15 Kd subunit | chr4:9202529-9203975 REVERSE
           LENGTH=114
          Length = 114

 Score =  179 bits (454), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 92/114 (80%)

Query: 1   MSSMKFCRRCNNILYPKEDTEQKVLYYACRHCNHQEIADDNIVYRNQIRQSVGRNPQAEQ 60
           MS+MKFCR CNNILYPKED EQ +L YACR+C+HQE AD+N VYRN++  SV    Q   
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  NVAADPTLPRTKSVRCSQCNHGEAVFFQTTTRGEEGTTLVFVCCNPTCGHRWRD 114
           +VA+DPTLPRTK+VRC++C HGEAVFFQ T RGEEG TL FVCCNP C HRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114