Miyakogusa Predicted Gene
- Lj4g3v2264010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2264010.1 tr|C1MHW5|C1MHW5_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_4627,39.82,0.000000000000001,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.50626.1
(528 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16180.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 760 0.0
AT4G16180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 140 2e-33
AT3G28720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 57 4e-08
>AT4G16180.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5
proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink). |
chr4:9165365-9170323 REVERSE LENGTH=820
Length = 820
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/515 (71%), Positives = 427/515 (82%), Gaps = 3/515 (0%)
Query: 1 MVPAGKARETEFGREVPLFEVEATAVEPVFQKLYSYIFDMDSVGSSVTEMDRPVPSAIFI 60
MVPAG A E +FGR +P ++VEA VE F +LYSYIFD+D S D+P+PSAIF+
Sbjct: 154 MVPAGTALEADFGRHLPAYDVEAIKVESAFNQLYSYIFDIDVGSGSAATADKPIPSAIFV 213
Query: 61 VNFDKVRVDPRNKEIDLDSLMYGKIPKLTEEDMKGQEXXXXXXXXXXXXXATQVWLSSGR 120
VNFDKVR+DP+N EIDLDSLM+ K+P+L++ D + QE A+QVWL+SGR
Sbjct: 214 VNFDKVRMDPKNTEIDLDSLMFAKLPELSDADKEKQEADYIYRYRYNGGGASQVWLASGR 273
Query: 121 FVVIDLSAGPCTYGKIEAEEGSVSSRTLPRLRNVMHLS--STPSYQSSSDIFLGQLASLV 178
+VVIDLSAGPCTYGKIE EEGSVS RT+PR+RN++ S +QS+ DIF GQLA+LV
Sbjct: 274 YVVIDLSAGPCTYGKIETEEGSVSPRTVPRIRNIVLPGNVSPVGHQSTHDIFSGQLAALV 333
Query: 179 STTVEHVIAPDVRFETVDLASRLLIPIIVLQNHNRYNIMEKGHNYSINIEEIRAEVKNLL 238
+TT+EHVIAPDVRFETVDLA+R+L+PIIVLQNHNRYNIME+G NYSINIEEI +EVK ++
Sbjct: 334 ATTIEHVIAPDVRFETVDLATRVLVPIIVLQNHNRYNIMERGQNYSINIEEIESEVKKMI 393
Query: 239 NDGQEVVIVGGAHSLHRHEKLEIAVSKAMRGHSLQETKNDGRFHVHTKTYLDGAILKEEM 298
+ GQEVVIVGGAH LHRHEKL IAVSKAMRGHSLQETK DGRFHVHTKTYLDGAILKEEM
Sbjct: 394 HHGQEVVIVGGAHPLHRHEKLAIAVSKAMRGHSLQETKKDGRFHVHTKTYLDGAILKEEM 453
Query: 299 ERSADVLSAGLLEVADPSLSSKYFLRQHWMDESEGSTDSILKHKPLWASYNS-XXXXXXX 357
ERS DVL+AGLL+V+DP LS+KYFLRQ W DESEGS+DSI+KH+PLW+SY+S
Sbjct: 454 ERSTDVLAAGLLDVSDPGLSNKYFLRQSWDDESEGSSDSIVKHRPLWSSYSSKLQKGKKK 513
Query: 358 XXXXXQGDLQPTYGTRVVPVFVLSLADVDSNLMMEDESMVWTSNDVVIVLEHQNAKIPLS 417
+GDL TYGTRV+PVF+LSLADVD LMMEDES+VW S+DVVIVL+H N KIPLS
Sbjct: 514 KAVKKKGDLYRTYGTRVIPVFILSLADVDPMLMMEDESLVWASSDVVIVLQHLNEKIPLS 573
Query: 418 YVSETYRRHALPSQAQRHILAGIASVVGGLSAPYEKASHVHERPVVNWLWAAGCHPFGPF 477
YVSET R+HA+PSQ QRH+LAGIAS +GG+SAPYEK SH HERP+ NWLWAAGCHPFGPF
Sbjct: 574 YVSETERQHAVPSQVQRHVLAGIASALGGVSAPYEKTSHAHERPITNWLWAAGCHPFGPF 633
Query: 478 SNTSHISQMLRDVALRNSIYARVDSVLRKIRETSE 512
SN S ISQML+DVALRN+IYARVDS LRKIRETSE
Sbjct: 634 SNVSLISQMLQDVALRNTIYARVDSALRKIRETSE 668
>AT4G16180.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
Has 25 Blast hits to 25 proteins in 9 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19;
Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
| chr4:9168562-9170323 REVERSE LENGTH=273
Length = 273
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 84/120 (70%)
Query: 1 MVPAGKARETEFGREVPLFEVEATAVEPVFQKLYSYIFDMDSVGSSVTEMDRPVPSAIFI 60
MVPAG A E +FGR +P ++VEA VE F +LYSYIFD+D S D+P+PSAIF+
Sbjct: 154 MVPAGTALEADFGRHLPAYDVEAIKVESAFNQLYSYIFDIDVGSGSAATADKPIPSAIFV 213
Query: 61 VNFDKVRVDPRNKEIDLDSLMYGKIPKLTEEDMKGQEXXXXXXXXXXXXXATQVWLSSGR 120
VNFDKVR+DP+N EIDLDSLM+ K+P+L++ D + QE A+QVWL+SGR
Sbjct: 214 VNFDKVRMDPKNTEIDLDSLMFAKLPELSDADKEKQEADYIYRYRYNGGGASQVWLASGR 273
>AT3G28720.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins
in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95;
Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes
- 732 (source: NCBI BLink). | chr3:10782276-10784339
FORWARD LENGTH=687
Length = 687
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 373 RVVPVFVLSLADVDSNLMMEDESMVWTSNDVVIVLEHQNAKIPLSYVSETYRRHALPSQA 432
RV+PV+V L D+++ L+++ D+VI + + + Y
Sbjct: 433 RVLPVYVFDL-DINTPLLLDRYHQSVAFRDMVIAVRTRGTQTVSDYTCNGRHVFVHTRDL 491
Query: 433 QRHILAGIASVVGGLSAPYEKASHVHERPVVNWLWAAGCHPFGPFSNTSHISQMLRDVAL 492
+R ++ I + G+S+ + S H +V++ W+ G PFGPFS+ S +S + +D A
Sbjct: 492 ERPLVGSILQSMWGVSSTHLTWSPRHNTTLVDYTWSIGQTPFGPFSDISSLSFVQKDAAK 551
Query: 493 RNSIYARVDSVL 504
RN I +++ +
Sbjct: 552 RNVILTSLNTTI 563