Miyakogusa Predicted Gene
- Lj4g3v2263920.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2263920.2 Non Chatacterized Hit- tr|I1MRT0|I1MRT0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10109
PE,74.51,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
RNA recognition motif,RNA recognition mot,CUFF.50625.2
(762 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 390 e-108
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 390 e-108
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 389 e-108
AT2G47310.1 | Symbols: | flowering time control protein-related... 210 4e-54
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 171 1e-42
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 170 3e-42
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 166 5e-41
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 164 2e-40
AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |... 156 5e-38
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 87 4e-17
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 1e-14
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 1e-14
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 1e-14
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 4e-14
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 4e-14
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 75 2e-13
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 6e-13
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 9e-13
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 9e-13
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 1e-12
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 1e-12
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 1e-12
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 72 2e-12
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 72 2e-12
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 2e-12
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 2e-12
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 2e-12
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 72 2e-12
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 3e-12
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 70 5e-12
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 70 5e-12
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 69 1e-11
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 69 1e-11
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 67 3e-11
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 6e-11
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 67 7e-11
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 9e-11
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 9e-11
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 65 2e-10
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 62 1e-09
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 1e-09
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 1e-09
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 1e-09
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 2e-09
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 62 2e-09
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 3e-09
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 7e-09
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 60 8e-09
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 59 1e-08
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 59 1e-08
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 59 1e-08
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 2e-08
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 59 2e-08
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 3e-08
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 57 4e-08
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 57 5e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 55 1e-07
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 55 1e-07
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 55 1e-07
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 55 3e-07
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 54 3e-07
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 6e-07
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 6e-07
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 53 6e-07
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 53 7e-07
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 53 8e-07
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 52 2e-06
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 3e-06
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 50 4e-06
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 274/439 (62%), Gaps = 30/439 (6%)
Query: 58 NSNRLMGAEGSGEFGFNGHQPP---PLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFA 114
+ R +G ++ PP PLSGQKRG+P S G + +D SD +
Sbjct: 67 DRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISDH------GSFTGTDVSDRSSTV 120
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFVGSVPRTA EE+IRP FE+HGNV+EVALIKD++TGQ QGCCF+KYATS++AD+AIRA
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
LHNQ+TLPGG GP+QVRYADGERER+G +E+KLFVGSLNKQA EVEEIF ++G VEDV
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 240
Query: 235 YLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSR 294
YLMRDE +QSRGCGFVKYS+++ A+AAI+GLNG YTMRGC+QPLIVRFA+PKRP+ G+SR
Sbjct: 241 YLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESR 300
Query: 295 GPA-FGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWRPMHP-NMGPSSNAGFHGMGP 352
A G G GPRF A G R S D GD + +N WRP N+GP SN G G G
Sbjct: 301 EMAPPVGLGSGPRFQASGPRPTSNFGDSSGD-VSHTNPWRPATSRNVGPPSNTGIRGAGS 359
Query: 353 PLLPKSGDMALPTNAGGPMTGMGAHIDGRFQAQPLSPMQQNFNQPRPQIPPVNQQTSPLQ 412
PK G LP+N GGP+ G G +S Q R Q +PL+
Sbjct: 360 DFSPKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNR----AAGQHITPLK 415
Query: 413 KPVHSSQ-TPIPYPQTSTHSSLRPRGQPQHPLSASPLPSQQGLGISGQFPXXXXXXXXXP 471
KP+HS Q P+P LRP Q P + +PL Q S Q P
Sbjct: 416 KPLHSPQGLPLP---------LRP--QTNFPGAQAPL--QNPYAYSSQLPTSQLPPQQNI 462
Query: 472 LSAKLPQAPLDSRVQSNTA 490
A PQ PL+ ++ T
Sbjct: 463 SRATAPQTPLNINLRPTTV 481
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 608 QNTTLAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEEFGLSE 649
Q+ KC WTEH SP+GFKYYYN +TGES+WEKPEE + E
Sbjct: 588 QSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFE 629
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/414 (53%), Positives = 266/414 (64%), Gaps = 27/414 (6%)
Query: 80 PLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGN 139
PLSGQKRG+P S G + +D SD + KLFVGSVPRTA EE+IRP FE+HGN
Sbjct: 17 PLSGQKRGYPISDH------GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGN 70
Query: 140 VIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERER 199
V+EVALIKD++TGQ QGCCF+KYATS++AD+AIRALHNQ+TLPGG GP+QVRYADGERER
Sbjct: 71 VLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER 130
Query: 200 LGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMAL 259
+G +E+KLFVGSLNKQA EVEEIF ++G VEDVYLMRDE +QSRGCGFVKYS+++ A+
Sbjct: 131 IGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAM 190
Query: 260 AAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPA-FGGSGFGPRFDAPGTRLPSKV 318
AAI+GLNG YTMRGC+QPLIVRFA+PKRP+ G+SR A G G GPRF A G R S
Sbjct: 191 AAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTSNF 250
Query: 319 SDPMGDRMPPSNTWRPMHP-NMGPSSNAGFHGMGPPLLPKSGDMALPTNAGGPMTGMGAH 377
D GD + +N WRP N+GP SN G G G PK G LP+N GGP+ G G
Sbjct: 251 GDSSGD-VSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGVP 309
Query: 378 IDGRFQAQPLSPMQQNFNQPRPQIPPVNQQTSPLQKPVHSSQ-TPIPYPQTSTHSSLRPR 436
+S Q R Q +PL+KP+HS Q P+P LRP
Sbjct: 310 PLNPLPVPGVSSSATLQQQNR----AAGQHITPLKKPLHSPQGLPLP---------LRP- 355
Query: 437 GQPQHPLSASPLPSQQGLGISGQFPXXXXXXXXXPLSAKLPQAPLDSRVQSNTA 490
Q P + +PL Q S Q P A PQ PL+ ++ T
Sbjct: 356 -QTNFPGAQAPL--QNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTV 406
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 608 QNTTLAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEEFGLSE 649
Q+ KC WTEH SP+GFKYYYN +TGES+WEKPEE + E
Sbjct: 513 QSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFE 554
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 274/439 (62%), Gaps = 30/439 (6%)
Query: 58 NSNRLMGAEGSGEFGFNGHQPP---PLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFA 114
+ R +G ++ PP PLSGQKRG+P S G + +D SD +
Sbjct: 67 DRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISDH------GSFTGTDVSDRSSTV 120
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFVGSVPRTA EE+IRP FE+HGNV+EVALIKD++TGQ QGCCF+KYATS++AD+AIRA
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
LHNQ+TLPGG GP+QVRYADGERER+G +E+KLFVGSLNKQA EVEEIF ++G VEDV
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 240
Query: 235 YLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSR 294
YLMRDE +QSRGCGFVKYS+++ A+AAI+GLNG YTMRGC+QPLIVRFA+PKRP+ G+SR
Sbjct: 241 YLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESR 300
Query: 295 GPA-FGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWRPMHP-NMGPSSNAGFHGMGP 352
A G G GPRF A G R S D GD + +N WRP N+GP SN G G G
Sbjct: 301 EMAPPVGLGSGPRFQASGPRPTSNFGDSSGD-VSHTNPWRPATSRNVGPPSNTGIRGAGS 359
Query: 353 PLLPKSGDMALPTNAGGPMTGMGAHIDGRFQAQPLSPMQQNFNQPRPQIPPVNQQTSPLQ 412
PK G LP+N GGP+ G G +S Q R Q +PL+
Sbjct: 360 DFSPKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNR----AAGQHITPLK 415
Query: 413 KPVHSSQ-TPIPYPQTSTHSSLRPRGQPQHPLSASPLPSQQGLGISGQFPXXXXXXXXXP 471
KP+HS Q P+P LRP Q P + +PL Q S Q P
Sbjct: 416 KPLHSPQGLPLP---------LRP--QTNFPGAQAPL--QNPYAYSSQLPTSQLPPQQNI 462
Query: 472 LSAKLPQAPLDSRVQSNTA 490
A PQ PL+ ++ T
Sbjct: 463 SRATAPQTPLNINLRPTTV 481
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 135/199 (67%), Gaps = 7/199 (3%)
Query: 103 SHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKY 162
S +D +DG AKL+V + +TA E DIR +FE++GNV E+ L KD+ TG+ CFIKY
Sbjct: 100 SATDNADGS-IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
Query: 163 ATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEY------KLFVGSLNKQA 216
EE + AI AL Q T PG + P++VR+A+ ERER+G KL+V LNKQ
Sbjct: 159 KKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQT 218
Query: 217 PVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQ 276
EV E+FS+YG +ED+Y+ D+ K RG FV++S ++MALAAI LNG++T+RG DQ
Sbjct: 219 TKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQ 278
Query: 277 PLIVRFADPKRPRQGDSRG 295
PLIVRFADPK+PR G+ R
Sbjct: 279 PLIVRFADPKKPRLGEQRS 297
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 608 QNTTLAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEEFGLSE 649
QNT ++C+W+EH P G KYY++ +T ES WEKP+E+ + E
Sbjct: 398 QNTVSSECDWSEHTCPNGNKYYFHCITCESTWEKPDEYSMYE 439
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 140/249 (56%), Gaps = 23/249 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
KLFVG VP+ E + LF E V EV +IK++ T +GCCF+ T E+AD+ I
Sbjct: 12 VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 71
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
+ HN+ TLPG P+QV+YADGE ERL E+KLFVG L K EV+ +FS+YG ++D
Sbjct: 72 SFHNKKTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVSETEVQSLFSEYGTIKD 128
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQG-- 291
+ ++R + S+GC F+KY +++ A+AA+ LNG + M G + PLIV++AD ++ RQ
Sbjct: 129 LQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQARR 188
Query: 292 -----------DSRGPAFGGS---GFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWRPMHP 337
D + P+ G+ + P ++ G +P G +PP T H
Sbjct: 189 LLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGT----YGYMLPPIQTQHAFHN 244
Query: 338 NMGPSSNAG 346
+ P+ G
Sbjct: 245 VISPNQGNG 253
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 26/255 (10%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
KLFVG VP+ E + LF E V EV +IK++ T +GCCF+ T E+AD+ I
Sbjct: 12 VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 71
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAV------EYKLFVGSLNKQAPVNEVEEIFSK 227
+ HN+ TLPG P+QV+YADGE ERL + E+KLFVG L K EV+ +FS+
Sbjct: 72 SFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 131
Query: 228 YGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKR 287
YG ++D+ ++R + S+GC F+KY +++ A+AA+ LNG + M G + PLIV++AD ++
Sbjct: 132 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEK 191
Query: 288 PRQG-------------DSRGPAFGGS---GFGPRFDAPGTRLPSKVSDPMGDRMPPSNT 331
RQ D + P+ G+ + P ++ G +P G +PP T
Sbjct: 192 ERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGT----YGYMLPPIQT 247
Query: 332 WRPMHPNMGPSSNAG 346
H + P+ G
Sbjct: 248 QHAFHNVISPNQGNG 262
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
KLFVG +P+ E + LF+E V EV +IKD+ T +GCCF+ + EEAD+ +
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
A HN+ TLPG +QV+YADGE ERL E+KLFVG L K EV+ +FSKYG ++D
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERL---EHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQ 290
+ ++R + S+GC F+KY ++ A++A+ +NG + M G PL+V++AD +R R
Sbjct: 135 LQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERH 191
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
KLFVG +P+ E + LF+E V EV +IKD+ T +GCCF+ + EEAD+ +
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
A HN+ TLPG +QV+YADGE ERL E+KLFVG L K EV+ +FSKYG ++D
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERL---EHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQ 290
+ ++R + S+GC F+KY ++ A++A+ +NG + M G PL+V++AD +R R
Sbjct: 135 LQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERH 191
>AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9210632 REVERSE LENGTH=505
Length = 505
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 136/258 (52%), Gaps = 23/258 (8%)
Query: 237 MRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSR-- 294
MRDE +QSRGCGFVKYS+++ A+AAI+GLNG YTMRGC+QPLIVRFA+PKRP+ G+SR
Sbjct: 1 MRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREM 60
Query: 295 GPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWRPMHP-NMGPSSNAGFHGMGPP 353
P G G GPRF A G R S D GD + +N WRP N+GP SN G G G
Sbjct: 61 APPV-GLGSGPRFQASGPRPTSNFGDSSGD-VSHTNPWRPATSRNVGPPSNTGIRGAGSD 118
Query: 354 LLPKSGDMALPTNAGGPMTGMGAHIDGRFQAQPLSPMQQNFNQPRPQIPPVNQQTSPLQK 413
PK G LP+N GGP+ G G +S Q R Q +PL+K
Sbjct: 119 FSPKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNR----AAGQHITPLKK 174
Query: 414 PVHSSQ-TPIPYPQTSTHSSLRPRGQPQHPLSASPLPSQQGLGISGQFPXXXXXXXXXPL 472
P+HS Q P+P LRP Q P + +PL Q S Q P
Sbjct: 175 PLHSPQGLPLP---------LRP--QTNFPGAQAPL--QNPYAYSSQLPTSQLPPQQNIS 221
Query: 473 SAKLPQAPLDSRVQSNTA 490
A PQ PL+ ++ T
Sbjct: 222 RATAPQTPLNINLRPTTV 239
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 608 QNTTLAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEEFGLSE 649
Q+ KC WTEH SP+GFKYYYN +TGES+WEKPEE + E
Sbjct: 346 QSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFE 387
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 16/197 (8%)
Query: 100 GEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCF 159
G+HS D A ++VG + EE + LF + G V+ V + KDR T HQ F
Sbjct: 15 GQHSAERNQD----ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGF 70
Query: 160 IKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVN 219
I+Y + E+AD AI+ L N + L G PI+V A +++ L V LF+G+L+
Sbjct: 71 IEYRSEEDADYAIKVL-NMIKLHG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEK 126
Query: 220 EVEEIFSKYGRV-EDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQP 277
+ + FS +G + + +MRD + SRG GF+ Y + + + AAI + G Y ++
Sbjct: 127 LLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYL---SNRQ 183
Query: 278 LIVRFA---DPKRPRQG 291
+ V +A D K R G
Sbjct: 184 ITVSYAYKKDTKGERHG 200
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++F+G +PR EED+R L EE G + EV L+KDR +G +G F+ + T + A +AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-RVE 232
LH++ I R L + +LF+G++ K +E ++ G VE
Sbjct: 176 ELHSKEFKGKTI-----------RCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 233 DVYLMRD--ENKQSRGCGFVKYSNRDMA 258
++ L++D ++RG FV Y N A
Sbjct: 225 NIELIKDPTNTTRNRGFAFVLYYNNACA 252
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIE-VALIKD-RKTGQHQGCCFIKYATSEEADQAI 172
+LF+G++P+ E++ R + E+ G +E + LIKD T +++G F+ Y + AD +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 173 RALHNQLTLPGGIGPIQVRYADG----ERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKY 228
+ + + G P V +AD E A L+V ++ + +++E+F ++
Sbjct: 257 QKMIDSNFKLEGNAPT-VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 229 GRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
G V + + + R GFV Y+ R AL A+ Y + G QPL V A P+
Sbjct: 316 GEVTKIVTPPGKGGK-RDFGFVHYAERSSALKAVKDTER-YEVNG--QPLEVVLAKPQAE 371
Query: 289 RQGDSRGPAFGGS 301
R+ D ++G +
Sbjct: 372 RKHDPSSYSYGAA 384
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++F+G +PR EED+R L EE G + EV L+KDR +G +G F+ + T + A +AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-RVE 232
LH++ I R L + +LF+G++ K +E ++ G VE
Sbjct: 176 ELHSKEFKGKTI-----------RCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 233 DVYLMRD--ENKQSRGCGFVKYSNRDMA 258
++ L++D ++RG FV Y N A
Sbjct: 225 NIELIKDPTNTTRNRGFAFVLYYNNACA 252
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIE-VALIKD-RKTGQHQGCCFIKYATSEEADQAI 172
+LF+G++P+ E++ R + E+ G +E + LIKD T +++G F+ Y + AD +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 173 RALHNQLTLPGGIGPIQVRYADG----ERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKY 228
+ + + G P V +AD E A L+V ++ + +++E+F ++
Sbjct: 257 QKMIDSNFKLEGNAPT-VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 229 GRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
G V + + + R GFV Y+ R AL A+ Y + G QPL V A P+
Sbjct: 316 GEVTKIVTPPGKGGK-RDFGFVHYAERSSALKAVKDTER-YEVNG--QPLEVVLAKPQAE 371
Query: 289 RQGDSRGPAFGGS 301
R+ D ++G +
Sbjct: 372 RKHDPSSYSYGAA 384
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++FVGS+ + A EED++ +F G V EV ++K+ +T + +G F+++AT E+A +A++
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG--RVE 232
L + + G + D LFVG++ K + E YG ++
Sbjct: 275 LKSPMINGKKCGVTASQDND-----------TLFVGNICKIWTPEALREKLKHYGVENMD 323
Query: 233 DVYLMRDEN--KQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFAD 284
D+ L+ D N +RG F+++S+R A+ A L M G ++P V F D
Sbjct: 324 DITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTD 377
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
K+FVG + R + F ++G + + ++KDRKTGQ +G F+ YA S D+ I+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
H + G I+ G K+FVG + +E +E F ++G +++
Sbjct: 103 NH---IIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Query: 235 YLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP----- 288
+MRD + +SRG GFV Y + DM + N I + G + ++ A+PK+P
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRI-ELSGT--QVEIKKAEPKKPNSVTT 216
Query: 289 ---RQGDSR 294
R GDSR
Sbjct: 217 PSKRFGDSR 225
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 14/148 (9%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++F+G +PR EED+R L EE G + EV L+KDR +G +G F+ + T + A +AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYG-RVE 232
LH++ + ++ +LF+G++ K +E ++ G VE
Sbjct: 176 ELHSKEFKASSTANCSLSLSN-----------RLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 233 DVYLMRD--ENKQSRGCGFVKYSNRDMA 258
++ L++D ++RG FV Y N A
Sbjct: 225 NIELIKDPTNTTRNRGFAFVLYYNNACA 252
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIE-VALIKD-RKTGQHQGCCFIKYATSEEADQAI 172
+LF+G++P+ E++ R + E+ G +E + LIKD T +++G F+ Y + AD +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 173 RALHNQLTLPGGIGPIQVRYADG----ERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKY 228
+ + + G P V +AD E A L+V ++ + +++E+F ++
Sbjct: 257 QKMIDSNFKLEGNAPT-VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 229 GRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRP 288
G V + + + R GFV Y+ R AL A+ Y + G QPL V A P+
Sbjct: 316 GEVTKIVTPPGKGGK-RDFGFVHYAERSSALKAVKDTER-YEVNG--QPLEVVLAKPQAE 371
Query: 289 RQGDSRGPAFGGS 301
R+ D ++G +
Sbjct: 372 RKHDPSSYSYGAA 384
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 20/166 (12%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
AKLFVG++P + + LFE+ G V +I +R T Q +G F+ +T EEA++A+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 174 ALHN------QLTL----PGGIGPIQVRYADGERE-RLGAVEYKLFVGSLNKQAPVNEVE 222
++ +LT+ P G P ER+ R+ ++++VG+L +E
Sbjct: 173 KFNSFEVNGRRLTVNRAAPRGSRP--------ERQPRVYDAAFRIYVGNLPWDVDSGRLE 224
Query: 223 EIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNG 267
+FS++G+V D ++ D E +SRG GFV+ SN + AI L+G
Sbjct: 225 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 270
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 21/188 (11%)
Query: 109 DGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEA 168
DG + K+F+G + + F ++G + + +++DR TGQ +G FI +A
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 169 DQAIRALHN--------QLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNE 220
D+ I H + T+P G G Q + + K+FVG + +E
Sbjct: 74 DKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTK---------KIFVGGIPSTVTEDE 124
Query: 221 VEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLI 279
+++ F+KYG V + ++RD E +SRG GFV + + ++ ++ N I D +
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDM---ADTQVE 181
Query: 280 VRFADPKR 287
++ A+PK+
Sbjct: 182 IKKAEPKK 189
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 26/167 (15%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ KLF+G + EE +R F +G+V+E +++DR TG+ +G FI +A +++
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 IRALH----------------NQLTLPGGIGPIQVR---YADGERERLGAVEYKLFVGSL 212
I H +Q L PI + + G R + K+FVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRDMA 258
E + F ++G + DV +M D N Q RG GF+ + + D
Sbjct: 118 PSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV 164
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 26/167 (15%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ KLF+G + EE +R F +G+V+E +++DR TG+ +G FI +A +++
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 IRALH----------------NQLTLPGGIGPIQVR---YADGERERLGAVEYKLFVGSL 212
I H +Q L PI + + G R + K+FVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRDMA 258
E + F ++G + DV +M D N Q RG GF+ + + D
Sbjct: 118 PSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV 164
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 21/175 (12%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+++F+G +PR EED+R L EE G + EV L+KDR +G +G F+ + T + A +AI
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
LH++ I R L + +LF+G++ P N E+ F K +ED
Sbjct: 156 ELHSKEFKGKTI-----------RCSLSETKNRLFIGNI----PKNWTEDEFRKV--IED 198
Query: 234 VYLMRDEN-KQSRGCGFVKYSNRDMA-LAAINGLNGIYTMRGCDQPLIVRFADPK 286
V N ++RG FV Y N A + ++ + + G V +ADPK
Sbjct: 199 VGPGDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEG--NAPTVTWADPK 251
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+LF+G++P+ E++ R + E+ V T +++G F+ Y + AD + +
Sbjct: 177 RLFIGNIPKNWTEDEFRKVIED------VGPGDPTNTTRNRGFAFVLYYNNACADYSRQK 230
Query: 175 LHNQLTLPGGIGPIQVRYADG----ERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGR 230
+ + G P V +AD E A L+V ++ + +++E+F ++G
Sbjct: 231 MIDSNFKLEGNAPT-VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGE 289
Query: 231 VEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQ 290
V + + + R GFV Y+ R AL A+ Y + G QPL V A P+ R+
Sbjct: 290 VTKIVTPPGKGGK-RDFGFVHYAERSSALKAVKDTER-YEVNG--QPLEVVLAKPQAERK 345
Query: 291 GDSRGPAFGGS 301
D ++G +
Sbjct: 346 HDPSSYSYGAA 356
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 26/167 (15%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ KLF+G + EE +R F +G+V+E +++DR TG+ +G FI +A +++
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 IRALH----------------NQLTLPGGIGPIQVR---YADGERERLGAVEYKLFVGSL 212
I H +Q L PI + + G R + K+FVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRDMA 258
E + F ++G + DV +M D N Q RG GF+ + + D
Sbjct: 118 PSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV 164
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 26/167 (15%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ KLF+G + EE +R F +G+V+E +++DR TG+ +G FI +A +++
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 IRALH----------------NQLTLPGGIGPIQVR---YADGERERLGAVEYKLFVGSL 212
I H +Q L PI + + G R + K+FVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRDMA 258
E + F ++G + DV +M D N Q RG GF+ + + D
Sbjct: 118 PSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV 164
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 26/204 (12%)
Query: 107 RSDGG---NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYA 163
RS+ G +F ++V ++P+ +++++ F ++G++ ++KD ++G + F+ +
Sbjct: 229 RSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFV 287
Query: 164 TSEEADQAIRALHNQLTLPGGIGPIQVRYADG------------ERERLGAVEY----KL 207
+ E A A+ + N ++L G + V A E+ER+ E L
Sbjct: 288 SPEAAAVAVEKM-NGISL--GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNL 344
Query: 208 FVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
++ +L+ +++E+FS+YG V +M + SRG GFV YSN + AL A+ +NG
Sbjct: 345 YLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG 404
Query: 268 IYTMRGCDQPLIVRFADPKRPRQG 291
R +PL V A K RQ
Sbjct: 405 KMIGR---KPLYVALAQRKEERQA 425
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 110 GGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEAD 169
G F K S+ A E F G ++ + D G+ +G F+++ E A
Sbjct: 146 GNVFIKNLDASIDNKALYET----FSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQ 200
Query: 170 QAIRALHNQLTLPGGIGPIQ-VRYADGERERLGAVE--YKLFVGSLNKQAPVNEVEEIFS 226
AI L+ L + VR D R GAV ++V +L K+ +E+++ F
Sbjct: 201 AAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG 260
Query: 227 KYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
KYG + +M+D++ SR GFV + + + A A+ +NGI
Sbjct: 261 KYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGI 302
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+ L+VG + + E + LF + V + + +D T + G ++ +A E+A +A+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
+L+ P PI++ ++ + + + +F+ +L+ + E FS +G +
Sbjct: 118 SLN---YAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS 174
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ D +S+G GFV++ + A AAI+ LNG+
Sbjct: 175 CKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGM 209
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 26/204 (12%)
Query: 107 RSDGG---NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYA 163
RS+ G +F ++V ++P+ +++++ F ++G++ ++KD ++G + F+ +
Sbjct: 229 RSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFV 287
Query: 164 TSEEADQAIRALHNQLTLPGGIGPIQVRYADG------------ERERLGAVEY----KL 207
+ E A A+ + N ++L G + V A E+ER+ E L
Sbjct: 288 SPEAAAVAVEKM-NGISL--GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNL 344
Query: 208 FVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
++ +L+ +++E+FS+YG V +M + SRG GFV YSN + AL A+ +NG
Sbjct: 345 YLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG 404
Query: 268 IYTMRGCDQPLIVRFADPKRPRQG 291
R +PL V A K RQ
Sbjct: 405 KMIGR---KPLYVALAQRKEERQA 425
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 110 GGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEAD 169
G F K S+ A E F G ++ + D G+ +G F+++ E A
Sbjct: 146 GNVFIKNLDASIDNKALYET----FSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQ 200
Query: 170 QAIRALHNQLTLPGGIGPIQ-VRYADGERERLGAVE--YKLFVGSLNKQAPVNEVEEIFS 226
AI L+ L + VR D R GAV ++V +L K+ +E+++ F
Sbjct: 201 AAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG 260
Query: 227 KYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
KYG + +M+D++ SR GFV + + + A A+ +NGI
Sbjct: 261 KYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGI 302
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+ L+VG + + E + LF + V + + +D T + G ++ +A E+A +A+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
+L+ P PI++ ++ + + + +F+ +L+ + E FS +G +
Sbjct: 118 SLN---YAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS 174
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ D +S+G GFV++ + A AAI+ LNG+
Sbjct: 175 CKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGM 209
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 44/217 (20%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
KLF+G + EE ++ F G VIE ++KDR TG+ +G F+ +A A+ I
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 174 ALHNQLTLPGGIGPIQVRYADGE------------RERLGAVE---------YKLFVGSL 212
HN I R + + R +++ K+FVG L
Sbjct: 66 EKHN----------IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGL 115
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD----MALAAINGLNG 267
++ + F ++G DV +M D N Q RG GF+ Y + + + L + LNG
Sbjct: 116 PSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG 175
Query: 268 IYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGGSGFG 304
+ + V+ A PK G SR P G +G
Sbjct: 176 --------KMVEVKRAVPKELSPGPSRSPLGAGYSYG 204
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 44/217 (20%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
KLF+G + EE ++ F G VIE ++KDR TG+ +G F+ +A A+ I
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 174 ALHNQLTLPGGIGPIQVRYADGE------------RERLGAVE---------YKLFVGSL 212
HN I R + + R +++ K+FVG L
Sbjct: 66 EKHN----------IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGL 115
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD----MALAAINGLNG 267
++ + F ++G DV +M D N Q RG GF+ Y + + + L + LNG
Sbjct: 116 PSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG 175
Query: 268 IYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGGSGFG 304
+ + V+ A PK G SR P G +G
Sbjct: 176 --------KMVEVKRAVPKELSPGPSRSPLGAGYSYG 204
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ KLF+G + EE ++ F ++G+++E +++DR TG+ +G FI +A A++
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 172 IRALH----------------NQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQ 215
I H +Q L P+ + GA K+FVG L
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132
Query: 216 APVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNR---DMAL 259
E + F ++G + DV +M D N Q RG GF+ + + DM L
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 20/210 (9%)
Query: 98 SPGEHSHSDRSDGG-----------NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALI 146
S G+ S D S+G AKLFVG++ + + LFE+ G V +I
Sbjct: 123 SEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVI 182
Query: 147 KDRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADGER-ERLGAV-- 203
+R+T Q +G F+ ++ +EA+ A+ N+ L G + + G R ER V
Sbjct: 183 YNRETDQSRGFGFVTMSSVDEAETAVEKF-NRYDLNGRLLTVNKAAPRGSRPERAPRVYE 241
Query: 204 -EYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAA 261
++++VG+L +E++FS++G+V + ++ D E +SRG GFV S+ D A
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 262 INGLNGIYTMRGCDQPLIVRFADPKRPRQG 291
I+ L+G + G + + V A+ + PR+G
Sbjct: 302 ISALDG-QNLEG--RAIRVNVAEERPPRRG 328
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ KLF+G + EE ++ F ++G+++E +++DR TG+ +G FI +A A++
Sbjct: 10 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 69
Query: 172 IRALH----------------NQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQ 215
I H +Q L P+ + GA K+FVG L
Sbjct: 70 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 129
Query: 216 APVNEVEEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNR---DMAL 259
E + F ++G + DV +M D N Q RG GF+ + + DM L
Sbjct: 130 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 177
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 102 HSHSD----RSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGC 157
+SH D RS GN +F+ ++ + + + F GN++ + D +GQ +G
Sbjct: 111 YSHRDPSVRRSGAGN---IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGY 166
Query: 158 CFIKYATSEEADQAIRALHNQLTLPGGI--GPI---QVRYADGERERLGAVEYKLFVGSL 212
F++YA E A +AI L+ L + GP Q R + + + V +V +L
Sbjct: 167 GFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNV----YVKNL 222
Query: 213 NKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+ ++++ F +YG++ +M+D +S+G GFV + N D A A+ LNG
Sbjct: 223 AESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 95 AGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQH 154
GP ++ F ++V ++ + ++D++ F E+G + ++KD + G+
Sbjct: 196 VGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKS 254
Query: 155 QGCCFIKYATSEEADQAIRAL--HNQLTLPGGIG----------PIQVRYADGERERLGA 202
+G F+ + +++A +A+ +L H +G ++VRY +E
Sbjct: 255 KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADK 314
Query: 203 VEYK-LFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAA 261
+ L+V +L+ +++EIFS +G V +MRD N S+G GFV ++ + A A
Sbjct: 315 FQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEA 374
Query: 262 INGLNGIYTMRGCDQPLIVRFADPKRPRQ 290
++ L+G +PL V A K R+
Sbjct: 375 MSQLSGKMIE---SKPLYVAIAQRKEDRR 400
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L+VG + + + F + G V+ V + +D T + G ++ + ++A +AI+ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 176 HNQLTLPGGIGPIQVRYA--DGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
N + L G PI+V Y+ D R GA +F+ +L++ + + FS +G +
Sbjct: 98 -NYIPLYGK--PIRVMYSHRDPSVRRSGA--GNIFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ D + QS+G GFV+Y+N + A AI LNG+
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGM 187
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFVG + + EE ++ F +G V+E + K++ TG+ +G F+++A + +A+R
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 175 LHNQLTLPGGI-----------GPIQVRYAD--------GERER----LGAVEYKLFVGS 211
H L P + P +++ + G RE + + K+FVG
Sbjct: 67 THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGG 126
Query: 212 LNKQAPVNEVEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRD 256
L+ E + F ++GR DV +M D + RG GFV Y + D
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED 172
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L+VG + T + + F + G V+ V + +D T + G ++ YAT ++A +A+ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N + L G I+V Y+ + + +F+ +L+K + E FS +G +
Sbjct: 107 -NFMALNGR--AIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ D + QS+G GFV+Y + A AI+ LNG+
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGM 196
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 117/264 (44%), Gaps = 43/264 (16%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
F ++V ++ + +E++ +F E G +++D + G+ +G F+ + S++A +A+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAV 281
Query: 173 RALHNQLTLPGGIGPIQVRYADGERERLGAVEYK--------------LFVGSLNKQAPV 218
AL+ + T + ERE +++ L+V +L++
Sbjct: 282 DALNGK-TFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTD 340
Query: 219 NEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPL 278
+++ E F+ +G + +MRD + SRG GFV +S + A AI +NG + +PL
Sbjct: 341 DKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVT---KPL 397
Query: 279 IVRFADPKRPRQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWR-PMHP 337
V A K R+ RL ++ S MPP+ R M+P
Sbjct: 398 YVALAQRKEDRKA---------------------RLQAQFSQMRPVNMPPAVGPRMQMYP 436
Query: 338 NMG-PSSNAGFHGMGPP-LLPKSG 359
G P F+G GPP ++P+ G
Sbjct: 437 PGGPPMGQQLFYGQGPPAMIPQPG 460
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F+ ++ ++ + + F G ++ + D +GQ +G F++Y T E A AI L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 176 HNQLTLPGGI--GPI---QVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGR 230
+ L + GP R GE+ + V +V +L++ E+ ++F ++G
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNV----YVKNLSESLSDEELNKVFGEFGV 249
Query: 231 VEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+MRD +S+G GFV + N D A A++ LNG
Sbjct: 250 TTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L+VG + T + + F + G V+ V + +D T + G ++ YAT ++A +A+ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N + L G I+V Y+ + + +F+ +L+K + E FS +G +
Sbjct: 107 -NFMALNGR--AIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 236 LMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ D + QS+G GFV+Y + A AI+ LNG+
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGM 196
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 117/264 (44%), Gaps = 43/264 (16%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
F ++V ++ + +E++ +F E G +++D + G+ +G F+ + S++A +A+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAV 281
Query: 173 RALHNQLTLPGGIGPIQVRYADGERERLGAVEYK--------------LFVGSLNKQAPV 218
AL+ + T + ERE +++ L+V +L++
Sbjct: 282 DALNGK-TFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTD 340
Query: 219 NEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPL 278
+++ E F+ +G + +MRD + SRG GFV +S + A AI +NG + +PL
Sbjct: 341 DKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVT---KPL 397
Query: 279 IVRFADPKRPRQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWR-PMHP 337
V A K R+ RL ++ S MPP+ R M+P
Sbjct: 398 YVALAQRKEDRKA---------------------RLQAQFSQMRPVNMPPAVGPRMQMYP 436
Query: 338 NMG-PSSNAGFHGMGPP-LLPKSG 359
G P F+G GPP ++P+ G
Sbjct: 437 PGGPPMGQQLFYGQGPPAMIPQPG 460
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F+ ++ ++ + + F G ++ + D +GQ +G F++Y T E A AI L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 176 HNQLTLPGGI--GPI---QVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGR 230
+ L + GP R GE+ + V +V +L++ E+ ++F ++G
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNV----YVKNLSESLSDEELNKVFGEFGV 249
Query: 231 VEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+MRD +S+G GFV + N D A A++ LNG
Sbjct: 250 TTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 19/193 (9%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
F ++V ++P+ E+++R F + G VI A++ ++G + F+ + +E A A+
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAV 286
Query: 173 RALHNQLTLPGGIGPIQVRYADGERE----------RLGAVEY----KLFVGSLNKQAPV 218
+ N ++L + + ERE R+ E L++ +L+
Sbjct: 287 EKM-NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDD 345
Query: 219 NEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPL 278
+++E+FS+YG V +M + SRG GFV YSN + AL A++ +NG R +PL
Sbjct: 346 EKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR---KPL 402
Query: 279 IVRFADPKRPRQG 291
+ A K R+
Sbjct: 403 YIALAQRKEDRRA 415
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+ L+ G + E + LF+ NV+ V + +D+ + G +I ++ +A +A+
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 174 ALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
AL+ P PI++ ++ + + + +F+ +L+ + E FS +G +
Sbjct: 108 ALNYT---PLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILS 164
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
+ D +S+G GFV++ + A AAI+ LNG+
Sbjct: 165 CKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGM 199
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 21/170 (12%)
Query: 100 GEHSHSDR---SDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQG 156
G S +D DG + K+F+G + + F ++G + + +++DR TGQ +G
Sbjct: 2 GSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRG 61
Query: 157 CCFIKYATSEEADQAIRALHN--------QLTLPGGIGPIQVRYADGERERLGAVEYKLF 208
FI +A D+ I H + T+P G G Q + + K+F
Sbjct: 62 FGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTK---------KIF 112
Query: 209 VGSLNKQAPVNEVEEIFSKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDM 257
VG + +E+++ F+KYG V + ++RD E +SRG GFV + + ++
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEV 162
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
L+VG + + + F E V+ V + +D T G ++ Y+ +++A++A+
Sbjct: 45 LCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAM 104
Query: 173 RALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVE 232
+ L N L G + I++ Y+ + + LFV +L+K + E FS G +
Sbjct: 105 QKL-NYSYLNGKM--IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIV 161
Query: 233 DVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+ D QSRG GFV++ D A AI LNG
Sbjct: 162 SCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
LFV ++ ++ + + F G ++ + D GQ +G F+++ T + A AI L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 176 HNQLTLPGGI--GPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVED 233
+ ++ I GP +R + E ++V +L++ +E++ F +YG +
Sbjct: 195 NGKVLNDKQIFVGPF-LRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISS 253
Query: 234 VYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGD- 292
+MRD + +SR GFV + N + A A+ LNG + D+ V A K R+ +
Sbjct: 254 AVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG---KKFDDKEWYVGKAQKKSERELEL 310
Query: 293 SRGPAFGGSGFGPRFD 308
SR G S G +FD
Sbjct: 311 SRRYEQGSSDGGNKFD 326
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 30/235 (12%)
Query: 95 AGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQH 154
GP + +D F ++V ++ +++++ F ++G++ +++D G+
Sbjct: 206 VGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKS 264
Query: 155 QGCCFIKYATSEEADQAIRALHNQL--TLPGGIGPIQVRYADGERERLGAVEYK------ 206
+ F+ + E+A +A+ AL+ + +G Q + ERE + Y+
Sbjct: 265 RCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKK---SERELELSRRYEQGSSDG 321
Query: 207 --------LFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMA 258
L+V +L+ ++ E+F+++G + +MRD + S+G GFV +S A
Sbjct: 322 GNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEA 381
Query: 259 LAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRG------PAFGGSGFGPRF 307
+N +NG M G +PL V A K R+ + PAF G GPR
Sbjct: 382 SRVLNEMNG--KMVG-GKPLYVALAQRKEERRAKLQAQFSQMRPAF-IPGVGPRM 432
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KL V +P + ++ + G++ + ++KDR TG+ +G ++ +A++E+A A++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
H L I ++V E + ++FV + ++ F +YG + D+
Sbjct: 64 EH---FLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 235 YLMRDEN-KQSRGCGFVKYSNRD 256
Y+ +D N KQ RG GF+ +S+ D
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSAD 143
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KL V +P + ++ + G++ + ++KDR TG+ +G ++ +A++E+A A++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
H L I ++V E + ++FV + ++ F +YG + D+
Sbjct: 64 EH---FLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 235 YLMRDEN-KQSRGCGFVKYSNRD 256
Y+ +D N KQ RG GF+ +S+ D
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSAD 143
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 10/188 (5%)
Query: 106 DRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATS 165
DR G + L+VG + E + F G V V +I+++ T Q +G F+++ +
Sbjct: 100 DRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSR 159
Query: 166 EEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVE----YKLFVGSLNKQAPVNEV 221
A++ ++ + +P P ++ +A AVE +FVG L+ +
Sbjct: 160 AAAEEVLQNYSGSV-MPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLL 218
Query: 222 EEIFS-KYGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLI 279
E FS +Y V+ ++ D N +S+G GFV++ + + A+ +NG Y ++ +
Sbjct: 219 HETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYC---SNRQMR 275
Query: 280 VRFADPKR 287
V A PKR
Sbjct: 276 VGIATPKR 283
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 22/189 (11%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
++V ++ T ++ + LF ++G V V +++D G+ +G F+ + E A +A+ +L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYK---------------LFVGSLNKQAPVNE 220
L G + V A + ER ++ K L+V +L++
Sbjct: 263 ---CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETR 319
Query: 221 VEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIV 280
+ EIF YG++ +M EN +S+G GFV +SN + + A LNG + + G +P++V
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNG-FLVDG--KPIVV 376
Query: 281 RFADPKRPR 289
R A+ K R
Sbjct: 377 RVAERKEDR 385
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 5/158 (3%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
FA L+V ++ + + +F G+++ ++++ GQ +G F+++ T + A A
Sbjct: 111 FANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSAR 168
Query: 173 RALHNQLTLPGGIGPIQVRYADGERERLGAVE--YKLFVGSLNKQAPVNEVEEIFSKYGR 230
ALH + + + D ER + + ++V +L + + + +FS+YG
Sbjct: 169 SALHGSMVYGKKLFVAKFINKD-ERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT 227
Query: 231 VEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
V V +MRD +SRG GFV + N + A A+ L G+
Sbjct: 228 VSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGL 265
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 100 GEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCF 159
G H HS R F L+VG + E+D+ F + V+ V L ++ TG+ +
Sbjct: 12 GNHQHSSR-----FGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAY 66
Query: 160 IKYATSEEADQAIRALHNQLTLPGGIGPI---QVRYADGERERLGAVEYKLFVGSLNKQA 216
I + + A A+ L N L G I Q A R R G L+V +L+
Sbjct: 67 INFDSPFSASNAMTRL-NHSDLKGKAMRIMWSQRDLAYRRRTRTGFAN--LYVKNLDSSI 123
Query: 217 PVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+ +E +F +G + ++ +EN QS+G GFV++ A++A + L+G
Sbjct: 124 TSSCLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHG 173
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 107 RSDGGNFA--KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYAT 164
R+D F L+VGS+ E D+ LF +G++ + + R G FI Y
Sbjct: 9 RADDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR------GFAFIYYRH 62
Query: 165 SEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEI 224
EEA A AL L G I++ YA R L+VG + +++EE
Sbjct: 63 VEEAVAAKEALQGA-NLNGS--QIKIEYA-----RPAKPCKSLWVGGIGPNVSKDDLEEE 114
Query: 225 FSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
FSK+G++ED +R+ R F+ Y D AL A +NG
Sbjct: 115 FSKFGKIEDFRFLRE-----RKTAFIDYYEMDDALQA-KSMNG 151
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 107 RSDGGNFA--KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYAT 164
R+D F L+VGS+ E D+ LF +G++ + + R G FI Y
Sbjct: 9 RADDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR------GFAFIYYRH 62
Query: 165 SEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEI 224
EEA A AL L G I++ YA R L+VG + +++EE
Sbjct: 63 VEEAVAAKEALQGA-NLNGS--QIKIEYA-----RPAKPCKSLWVGGIGPNVSKDDLEEE 114
Query: 225 FSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
FSK+G++ED +R+ R F+ Y D AL A +NG
Sbjct: 115 FSKFGKIEDFRFLRE-----RKTAFIDYYEMDDALQA-KSMNG 151
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 107 RSDGGNFA--KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYAT 164
R+D F L+VGS+ E D+ LF +G++ + + R G FI Y
Sbjct: 9 RADDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR------GFAFIYYRH 62
Query: 165 SEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEI 224
EEA A AL L G I++ YA R L+VG + +++EE
Sbjct: 63 VEEAVAAKEALQGA-NLNGS--QIKIEYA-----RPAKPCKSLWVGGIGPNVSKDDLEEE 114
Query: 225 FSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
FSK+G++ED +R+ R F+ Y D AL A +NG
Sbjct: 115 FSKFGKIEDFRFLRE-----RKTAFIDYYEMDDALQA-KSMNG 151
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 107 RSDGGNFA--KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYAT 164
R+D F L+VGS+ E D+ LF +G++ + + R G FI Y
Sbjct: 9 RADDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR------GFAFIYYRH 62
Query: 165 SEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEI 224
EEA A AL L G I++ YA R L+VG + +++EE
Sbjct: 63 VEEAVAAKEALQGA-NLNGS--QIKIEYA-----RPAKPCKSLWVGGIGPNVSKDDLEEE 114
Query: 225 FSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
FSK+G++ED +R+ R F+ Y D AL A +NG
Sbjct: 115 FSKFGKIEDFRFLRE-----RKTAFIDYYEMDDALQA-KSMNG 151
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 15/169 (8%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F +P A E D+ F + G V +V LI DR + + +G +I++ AI AL
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 228
Query: 176 HNQLTLPGGIGPIQVRYADGERER----------LGAVEYKLFVGSLNKQAPVNEVEEIF 225
QL L P+ V+ ++ E+ G + KL+VG+L+ ++ +IF
Sbjct: 229 SGQLFLG---QPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIF 285
Query: 226 SKYGRVEDVYLMRD-ENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRG 273
+G VE V L D E Q +G GF+++ + + AA LNG + G
Sbjct: 286 EAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAG 334
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 21/197 (10%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI-- 172
KLFVG V E F + G V++ ++ DR TG +G F+ +A S A++ +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 173 ------RALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFS 226
R + + TLP G ++ R K+FVG L +E++ F
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTR--------KIFVGGLPPLLEEDELKNYFC 178
Query: 227 KYGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADP 285
YG + + +M D + +SRG GFV + D ++ + ++ + D+ + ++ A+P
Sbjct: 179 VYGDIIEHQIMYDHHTGRSRGFGFVTFQTED-SVDRLFSDGKVHEL--GDKQVEIKRAEP 235
Query: 286 KRPRQGDSRGPAFGGSG 302
KR + D+ ++G SG
Sbjct: 236 KRTGR-DNSFRSYGASG 251
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFVG + E+ +R F +G V + +++D+ TG+ +G F+ ++ D+ ++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEY-------------KLFVGSLNKQAPVNEV 221
H+ T + R R G + K+FVG L E
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126
Query: 222 EEIFSKYGRVEDVYLMRDE-NKQSRGCGFVKYSNRDMALAAIN 263
+ F YG V DV +M D+ + RG GFV + + D + ++
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 140 VIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGGIGPIQVRYAD---GE 196
++ V +I+++ G +G F+++ + + AD+ +R N T+P P ++ +A GE
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREF-NGTTMPNTDQPFRLNWASFSTGE 187
Query: 197 RERL--GAVEYKLFVGSLNKQAPVNEVEEIFS-KYGRVEDVYLMRDENK-QSRGCGFVKY 252
+ RL + +FVG L+ N + E FS KY V+ ++ D N +S+G GFV++
Sbjct: 188 K-RLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Query: 253 SNRDMALAAINGLNGI 268
+ + A+ +NG+
Sbjct: 247 GDENERTKAMTEMNGV 262
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 14/156 (8%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLF+G + E +R F G V++V +++++ TG+ +G F+ ++ D+ ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 175 LHNQLTLPGGIGPIQVRYADGERERLGAVEY-------------KLFVGSLNKQAPVNEV 221
H+ + R R G K+FVG L +E
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEF 126
Query: 222 EEIFSKYGRVEDVYLMRDENKQS-RGCGFVKYSNRD 256
F YG V D +M D+ Q RG GFV + + D
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSED 162
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
F ++V ++ TA + D++ LF E G + ++KD + G+ + F+ + +E A AI
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAI 176
Query: 173 RALHNQLTLPGGIGPIQVRYADGERERLGA---VE-----------YKLFVGSLNKQAPV 218
++ + + + + E L A +E L+V +L+
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 219 NEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPL 278
++EE+FS++G + +M N S+G GFV++S + A A+ +NG M G ++P+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNG--KMVG-NKPI 293
Query: 279 IVRFADPK 286
V A K
Sbjct: 294 YVSLAQCK 301
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+L +VP T+ EDIR LFE++G+VI++ + +K +++G FI+ A+ EEA A+++
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKK-ERNRGLVFIEMASPEEAATALKS 153
Query: 175 L----HNQLTLPGGIGPIQVRYADGERERLGAV-EYKLFVGSLNKQAPVNEVEEIF-SKY 228
L + L + + RE V + LFV +L +A ++E F +
Sbjct: 154 LESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADT 213
Query: 229 GRVEDVYLMRDEN-KQSRGCGFVKYSNRDMALAAINGLNG 267
G V ++ EN ++S G GFV + + A AA+ G
Sbjct: 214 GNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQG 253
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++++G++PRT E + L EEHG V +V ++ D+ +G+ + F + E+A+ +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 175 LH-----------NQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEE 223
L+ N P P + E YK++VG+L K +E
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSP-DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 224 IFSKYGRVEDVYLMR-DENKQSRGCGFVKYSNRDMALAAINGLN 266
+FS+ G+V + R +S G GFV +S+ + AAI LN
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
++++G++PRT E + L EEHG V +V ++ D+ +G+ + F + E+A+ +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 175 LH-----------NQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEE 223
L+ N P P + E YK++VG+L K +E
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSP-DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 224 IFSKYGRVEDVYLMR-DENKQSRGCGFVKYSNRDMALAAINGLN 266
+FS+ G+V + R +S G GFV +S+ + AAI LN
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 10/186 (5%)
Query: 108 SDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEE 167
S G + L+VG + E + F V V +I++++T Q +G F+++ +
Sbjct: 113 SGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSA 172
Query: 168 ADQAIRALHNQLTLPGGIGPIQVRYAD---GE-RERLGAVEYKLFVGSLNKQAPVNEVEE 223
A++A+++ +T+P P ++ +A GE R + +FVG L + E
Sbjct: 173 AEEALQSFSG-VTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLE 231
Query: 224 IFS-KYGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVR 281
F+ +Y V+ ++ D N +S+G GFV++ + + A+ +NG + + + V
Sbjct: 232 TFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFC---SSRQMRVG 288
Query: 282 FADPKR 287
A PKR
Sbjct: 289 IATPKR 294
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFV ++P + DI LF + G V V +I+ +K G+++G F+ A+ EEA AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIR-QKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 175 LHNQLTLPGGIGPIQVRYADGERERL------------GAVEYKLFVGSLNKQAPVNEVE 222
+ + G I I V +A ++ G +KL+V +L +A +
Sbjct: 155 F-DTFQVSGRI--ISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLR 211
Query: 223 EIFS--KYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIV 280
E+F+ + V + D +S G GFV ++ R+ A AI LNG M +P+ +
Sbjct: 212 ELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIM---GRPITL 268
Query: 281 RFA 283
+F+
Sbjct: 269 KFS 271
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
+KLF+G + + E+ +R F ++G V++ +I DR+TG+ +G F+ + +SE A AI+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 174 ALHNQLTLPGGIGPIQVRYAD 194
AL + L G + ++V YA+
Sbjct: 100 ALDGR-DLHGRV--VKVNYAN 117
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+L +VP T+ EDIR LFE++G+VI++ + +K +++G FI+ A+ EEA A+++
Sbjct: 35 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALKS 93
Query: 175 L----HNQLTLPGGIGPIQVRYADGERERLGAV-EYKLFVGSLNKQAPVNEVEEIF-SKY 228
L + L + + RE V + LFV +L +A ++E F +
Sbjct: 94 LESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADT 153
Query: 229 GRVEDVYLMRDEN-KQSRGCGFVKYSNRDMALAAINGLNG 267
G V ++ EN ++S G GFV + + A AA+ G
Sbjct: 154 GNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQG 193
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
Query: 112 NFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQA 171
+ L++G + + E I +F + G +I+++ TGQ +G FI++ + A++
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 172 IRALHNQLTLPGGIGPIQVRYADG----ERERLGAVEYKLFVGSLNKQAPVNEVEEIFSK 227
++ +N +P ++ +A +R + ++ +FVG L + + + F
Sbjct: 118 LQT-YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKN 176
Query: 228 -YGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIY 269
YG V+ ++ D +S+G GFV++++ + + A+ +NG Y
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQY 220
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 116 LFVGSVPRTACEEDIRPLFEE-HGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+FVG + + + F+ +G+V ++ DR TG+ +G F+++A E +A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 175 LHNQL--TLPGGIGPIQVR---------YADGERERLGAVE---YKLFVGSLNKQAPVNE 220
++ Q T P IGP + Y + + G + +FVG L+ +E
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 221 VEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
++ IF ++G + V + + CGFV+Y+N+ A A++ LNG
Sbjct: 276 LKSIFGQFGELLHVKI-----PPGKRCGFVQYANKASAEHALSVLNG 317
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 16/180 (8%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L++G + E + F + G ++ V +I+++ TGQ +G FI++ + A++ ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT- 84
Query: 176 HNQLTLPGGIGPIQVRYAD-GERERLGAV-EYKLFVGSLNKQAPVNEVEEIF-SKYGRVE 232
+N +PG ++ +A G +++ A ++ +FVG L ++E F Y V
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 233 DVYLMRD-ENKQSRGCGFVKY---SNRDMALAAINGLNGIYTMRGCD-QPLIVRFADPKR 287
++ D +S+G GFVK+ S R+ A+A +NGL C +P+ + A PK+
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLY-------CSTRPMRISAATPKK 197
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 90/179 (50%), Gaps = 14/179 (7%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L++G + E + F + G ++ V +I+++ TGQ +G FI++ + A++ ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT- 84
Query: 176 HNQLTLPGGIGPIQVRYAD-GERERLGA-VEYKLFVGSLNKQAPVNEVEEIF-SKYGRVE 232
+N +PG ++ +A G +++ A ++ +FVG L ++E F Y V
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 233 DVYLMRD-ENKQSRGCGFVKY---SNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKR 287
++ D +S+G GFVK+ S R+ A+A +NGL +P+ + A PK+
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGL------YCSTRPMRISAATPKK 197
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
++VG++ E ++ +F G V LI+ K+ F+ Y A AI +L
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSY----GFVHYFDRRSAALAILSL 116
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N L G + YA G+RE + + +FVG L+ + + + FS + D
Sbjct: 117 -NGRHLFGQPIKVNWAYATGQREDTSS-HFNIFVGDLSPEVTDATLYQSFSVFSSCSDAR 174
Query: 236 LMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIY 269
+M D+ +SRG GFV + N+ A AIN +NG +
Sbjct: 175 VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 209
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 114 AKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 173
A L+VG + + E + F E ++ V L KD +G+ + + + ++A+ AI
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 174 ALHNQLTLPGGIGPIQ--VRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRV 231
+N L L G + + VR D R +G V FV +L + ++++F K+G +
Sbjct: 84 KKNNSL-LNGKMIRVMWSVRAPDARRNGVGNV----FVKNLPESVTNAVLQDMFKKFGNI 138
Query: 232 EDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLN 266
+ E+ +SRG GFV++ D A AAI LN
Sbjct: 139 VSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 113 FAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAI 172
+ L++ ++ E+ +R F E G ++ +A+ KD + +G F+ + E+A +A
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAA 258
Query: 173 RALHNQLTLPGG----IGPIQVRYADGERERLGAVEYK--------------LFVGSLNK 214
++ T G +G Q + ERE+L ++K ++V ++N
Sbjct: 259 ETVNG--TKFGSKCLYVGRAQKK---AEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNV 313
Query: 215 QAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGC 274
E+ + FS+ G + LM DE +S+G GFV +S + A+ A+ +G G
Sbjct: 314 AVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHG-QMFHG- 371
Query: 275 DQPLIVRFADPKRPRQ 290
+PL V A K R+
Sbjct: 372 -KPLYVAIAQKKEDRK 386
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
LFV +V + + ++ LF++ G+V + G+++G + Y A +A RAL
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRAL-----HTAGKNRGFIMVSYYDIRAAQKAARAL 267
Query: 176 HNQLTLPGGIGPIQVRYAD-GERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDV 234
H +L L G + +RY+ E + + E L+V +L+ E+ IFS YG + +V
Sbjct: 268 HGRL-LRGR--KLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREV 324
Query: 235 YLMRDENKQSRGCGFVKYSNRDMALAAINGLNGI 268
EN Q ++++ + A A+ GLNG+
Sbjct: 325 RRTMHENSQV----YIEFFDVRKAKVALQGLNGL 354
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 116 LFVGSVPRTACEEDIRPLFEE-HGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+FVG + + + F+ + +V ++ DR TG+ +G F+++A E +A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 175 LHNQLT-------------LPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEV 221
++ Q P + P + G +FVG++++ +++
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 222 EEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNG 267
+ +F ++G + V + + CGFV+Y+NR A A++ LNG
Sbjct: 295 KSVFGQFGELVHVKI-----PAGKRCGFVQYANRACAEQALSVLNG 335
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 111 GNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQ 170
G L++G + E + +F G +I++++ G +G FI++ A++
Sbjct: 77 GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
Query: 171 AIRALHNQLTLPGGIGPIQVRYAD---GERERLGAVEYKLFVGSLNKQAPVNEVEEIF-S 226
++ +N +P ++ +A GER + E+ +FVG L + + E F +
Sbjct: 137 NLQT-YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKA 195
Query: 227 KYGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIY 269
Y V+ ++ D +S+G GFV++++ + A+ +NG Y
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQY 239
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L++G + E + F G ++ +I++++TGQ +G FI++A+ A++ ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 176 HNQ--LTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIF-SKYGRVE 232
+N + P + + +R + +Y +FVG L + E F + Y V+
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 233 DVYLMRDE-NKQSRGCGFVKYSNRDMALAAINGLNGI 268
++ D +++G GFV++S+ + A+ +NG+
Sbjct: 184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 103 SHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFE-EHGNVIEVALIKDRKTGQHQGCCFIK 161
S D+ D +FVG + + + F + +V ++ DR TG+ +G F++
Sbjct: 144 SSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVR 203
Query: 162 YATSEEADQAIRALHNQLTLPGGIGPIQV------RYADGERERLGAV-----------E 204
+ S+E++Q IRA+ +P P+++ + G+R+ +
Sbjct: 204 F--SDESEQ-IRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNN 260
Query: 205 YKLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAING 264
+FVG L+ + ++ +FS+YG + V + + CGFV++S + A A+
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI-----PAGKRCGFVQFSEKSCAEEALRM 315
Query: 265 LNGI 268
LNG+
Sbjct: 316 LNGV 319
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
++ G++ E ++ +F G + LI+ K+ F+ Y A AI L
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYG----FVHYFDRRCASMAIMTL 120
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N + G + YA G+RE + + +FVG L+ + + + FS + D
Sbjct: 121 -NGRHIFGQPMKVNWAYATGQREDTSS-HFNIFVGDLSPEVTDAALFDSFSAFNSCSDAR 178
Query: 236 LMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIYT 270
+M D+ +SRG GFV + N+ A AIN +NG +
Sbjct: 179 VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWV 214
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
L++G + E + F G ++ +I++++TGQ +G FI++A+ A++ ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 176 HNQ--LTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIF-SKYGRVE 232
+N + P + + +R + +Y +FVG L + E F + Y V+
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 233 DVYLMRDE-NKQSRGCGFVKYSNRDMALAAINGLNGI 268
++ D +++G GFV++S+ + A+ +NG+
Sbjct: 184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F + A E D+ F G V +V +I DR + + +G ++++ + AI AL
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-AL 242
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEY----------------KLFVGSLNKQAPVN 219
Q L P+ V+ ++ E+ + + +L+VG+L+ +
Sbjct: 243 SGQPLLGQ---PVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSED 299
Query: 220 EVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRG 273
++ ++F +G VE V + RDE +G GFV+++ + A A+N LNG + G
Sbjct: 300 DLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIAG 352
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
+F + A E D+ F G V +V +I DR + + +G ++++ + AI AL
Sbjct: 233 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-AL 291
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEY----------------KLFVGSLNKQAPVN 219
Q L P+ V+ ++ E+ + + +L+VG+L+ +
Sbjct: 292 SGQPLLGQ---PVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSED 348
Query: 220 EVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRG 273
++ ++F +G VE V + RDE +G GFV+++ + A A+N LNG + G
Sbjct: 349 DLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIAG 401
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 115 KLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
KLFVG++P + LFE GNV V +I D+ TG+ +G F+ ++ E + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 175 LHNQLTLPGGIGPIQVR-----------YADGERERLGAVEY--------------KLFV 209
N L G P++V ++ G R G+ +++V
Sbjct: 152 F-NGYELDG--RPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYV 208
Query: 210 GSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNG 267
G+L+ +E +FS+ G+V + ++ D + +S+G GFV Y + AI L+G
Sbjct: 209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
++VG++ E ++ +F G V LI+ K+ F+ Y A AI +L
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYG----FVHYFDRRSAGLAILSL 111
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N L G + YA G+RE + + +FVG L+ + + FS Y D
Sbjct: 112 -NGRHLFGQPIKVNWAYASGQREDTSS-HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDAR 169
Query: 236 LMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIY 269
+M D+ +SRG GFV + N+ A AI+ + G +
Sbjct: 170 VMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKW 204
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 116 LFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 175
++VG++ E ++ +F G V LI+ K+ F+ Y A AI +L
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYG----FVHYFDRRSAGLAILSL 111
Query: 176 HNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVY 235
N L G + YA G+RE + + +FVG L+ + + FS Y D
Sbjct: 112 -NGRHLFGQPIKVNWAYASGQREDTSS-HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDAR 169
Query: 236 LMRDENK-QSRGCGFVKYSNRDMALAAINGLNGIY 269
+M D+ +SRG GFV + N+ A AI+ + G +
Sbjct: 170 VMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKW 204
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 119/281 (42%), Gaps = 37/281 (13%)
Query: 73 FNGHQPPPLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRP 132
FNG P P + Q PF A S GE + G +FVG + + +
Sbjct: 166 FNG-APMPNTDQ----PFRLNWASFSTGEKR---LENNGPDLSIFVGDLAPDVSDALLHE 217
Query: 133 LF-EEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGG--IGPIQ 189
F E++ +V ++ D TG+ +G F+++ E +A+ ++ IGP
Sbjct: 218 TFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 277
Query: 190 VRYADGERERLG-------------AVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVYL 236
R +G +++ G + +FVG L+ ++++ FS++G + V +
Sbjct: 278 PRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
Query: 237 MRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGP 296
+GCGFV++ NR A A+ LNG + + R K+PR D G
Sbjct: 338 -----PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR--DKYGN 390
Query: 297 AFGGSGFGPRF-DAPGTRLPSKVSDPMGDRMPPSNTWRPMH 336
+ +G +F + G +P DP RM P+ + PM+
Sbjct: 391 QWVDPYYGGQFYNGYGYMVPQ--PDP---RMYPAAPYYPMY 426
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 29/238 (12%)
Query: 116 LFVGSVPRTACEEDIRPLF-EEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 174
+FVG + + + F E++ +V ++ D TG+ +G F+++ E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 175 LHNQLTLPGG--IGPIQVRYADGERERLG-------------AVEYKLFVGSLNKQAPVN 219
++ IGP R +G +++ G + +FVG L+
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 220 EVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLI 279
++++ F+++G + V + +GCGFV++ NR A A+ LNG + +
Sbjct: 319 DLKQPFNEFGEIVSVKI-----PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSW 373
Query: 280 VRFADPKRPRQGDSRGPAFGGSGFGPRF-DAPGTRLPSKVSDPMGDRMPPSNTWRPMH 336
R K+PR D G + +G +F + G +P DP RM P+ + PM+
Sbjct: 374 GRNPANKQPR--DKYGNQWVDPYYGGQFYNGYGYMVPQ--PDP---RMYPAAPYYPMY 424
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 206 KLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDE-NKQSRGCGFVKYSNRDMALAAING 264
+++VG+L+ + + E FS YG V D +MRD +SRG GFV YS+ A AA++G
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 265 LNG 267
++G
Sbjct: 64 MDG 66
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 111 GNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQ 170
G +L+VG++P T ++ +F E G V++V ++ D+ T + +G F+ + EEA +
Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 171 AIRALHN--------QLTLP----GGIGPI-QVRYADGERERLGAVEYKLFVGSLNKQAP 217
A++ ++ ++ P GG + + + D R + + +K++ G+L
Sbjct: 173 AMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDS-PHKVYAGNLGWNLT 231
Query: 218 VNEVEEIFSKYGRVEDVYLMRDENK-QSRGCGFVKYSNRDMALAAINGLNGI 268
+++ F V ++ + N +SRG GF+ + + + +A+ +NG+
Sbjct: 232 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV 283