Miyakogusa Predicted Gene
- Lj4g3v2249070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2249070.1 tr|A6MZI1|A6MZI1_ORYSI Novel plant snare 11
(Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1,78.38,9e-18,Helical
region found in SNAREs,Target SNARE coiled-coil domain; Sec20,Sec20;
T_SNARE,Target SNARE co,CUFF.50565.1
(263 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |... 451 e-127
AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |... 446 e-126
AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |... 372 e-103
AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant sn... 315 3e-86
>AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
chr3:5969909-5972290 REVERSE LENGTH=269
Length = 269
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/264 (85%), Positives = 247/264 (93%), Gaps = 1/264 (0%)
Query: 1 MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 60
MA+NL M+PQLEQIHGEIRDHFRALANGFQ+LDKIKDS RQS QLEELT KMRECKRL+K
Sbjct: 1 MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVK 60
Query: 61 EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 120
EFDRE+KDEE RN PEV+KQLNDEKQSMIKELNSYVALRKTYM+T+GNKK+ELFD GAG
Sbjct: 61 EFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGV 120
Query: 121 S-EPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQ 179
S EPTAEENVQ+AS MSNQELV+AGMK MDETDQAIERSKQVV QT+EVGTQTA LKGQ
Sbjct: 121 SGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQ 180
Query: 180 TEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNP 239
T+QMGR+VN LD+IQFSIKKASQLVKEIGRQVATDKCIM FLFLIVCGVVAII+VKIVNP
Sbjct: 181 TDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNP 240
Query: 240 NNKDIKDIPGLAPPAPTRRLLYVR 263
NNKDI+DIPGLAPPA +R+LLY+R
Sbjct: 241 NNKDIRDIPGLAPPAQSRKLLYLR 264
>AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |
chr1:17809223-17811656 REVERSE LENGTH=265
Length = 265
Score = 446 bits (1146), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/264 (83%), Positives = 246/264 (93%), Gaps = 1/264 (0%)
Query: 1 MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 60
MA+ L M+P LEQIHGEIRDHFRALANGFQ+LDKIKDS+RQS QLEEL KMR+CKRL+K
Sbjct: 1 MASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVK 60
Query: 61 EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 120
EFDRE+KD E RN P+V+KQLNDEKQSMIKELNSYVALRKTY+NT+GNKK+ELFDTGAG
Sbjct: 61 EFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGV 120
Query: 121 S-EPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQ 179
S EPTAEENVQ+AS MSNQELV+AGMK MDETDQAIERSKQVVHQT+EVGTQTA LKGQ
Sbjct: 121 SGEPTAEENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQ 180
Query: 180 TEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNP 239
T+QMGR+VN+LD+IQFS+KKASQLVKEIGRQVATDKCIM FLFLIVCGV+AII+VKIVNP
Sbjct: 181 TDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNP 240
Query: 240 NNKDIKDIPGLAPPAPTRRLLYVR 263
NNKDI+DIPGLAPPA +R+LLY R
Sbjct: 241 NNKDIRDIPGLAPPAQSRKLLYFR 264
>AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
chr3:5970153-5972290 REVERSE LENGTH=216
Length = 216
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/213 (85%), Positives = 197/213 (92%), Gaps = 1/213 (0%)
Query: 1 MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 60
MA+NL M+PQLEQIHGEIRDHFRALANGFQ+LDKIKDS RQS QLEELT KMRECKRL+K
Sbjct: 1 MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVK 60
Query: 61 EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 120
EFDRE+KDEE RN PEV+KQLNDEKQSMIKELNSYVALRKTYM+T+GNKK+ELFD GAG
Sbjct: 61 EFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGV 120
Query: 121 S-EPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQ 179
S EPTAEENVQ+AS MSNQELV+AGMK MDETDQAIERSKQVV QT+EVGTQTA LKGQ
Sbjct: 121 SGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQ 180
Query: 180 TEQMGRIVNELDSIQFSIKKASQLVKEIGRQVA 212
T+QMGR+VN LD+IQFSIKKASQLVKEIGRQV
Sbjct: 181 TDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVC 213
>AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare
11 | chr2:14831087-14832979 FORWARD LENGTH=265
Length = 265
Score = 315 bits (806), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 171/259 (66%), Positives = 206/259 (79%), Gaps = 7/259 (2%)
Query: 7 MTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIKEFDREI 66
++ +L +I G+I D FRAL+NGFQKL+KIKD+NRQS QLEELT KMR+CK LIK+FDREI
Sbjct: 7 VSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREI 66
Query: 67 KDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIG--NKKLELFDTGAGASEPT 124
K E N ++ LND +QSM+KELNSYVAL+K Y + + NK+++LFD G E
Sbjct: 67 KSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEH 123
Query: 125 AEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQTEQMG 184
EENV LAS MSNQEL++ G MD+TDQAIER K++V +T+ VGT T+ LK QTEQM
Sbjct: 124 MEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMS 183
Query: 185 RIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDI 244
R+VNELDSI FS+KKAS+LVKEIGRQVATDKCIM FLFLIV GV+AII+VKIVNPNNKDI
Sbjct: 184 RVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDI 243
Query: 245 KDIP--GLAPPAPTRRLLY 261
+DIP GLAPPA RRLL+
Sbjct: 244 RDIPGVGLAPPAMNRRLLW 262