Miyakogusa Predicted Gene

Lj4g3v2249070.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2249070.1 tr|A6MZI1|A6MZI1_ORYSI Novel plant snare 11
(Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1,78.38,9e-18,Helical
region found in SNAREs,Target SNARE coiled-coil domain; Sec20,Sec20;
T_SNARE,Target SNARE co,CUFF.50565.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |...   451   e-127
AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |...   446   e-126
AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |...   372   e-103
AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant sn...   315   3e-86

>AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
           chr3:5969909-5972290 REVERSE LENGTH=269
          Length = 269

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/264 (85%), Positives = 247/264 (93%), Gaps = 1/264 (0%)

Query: 1   MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 60
           MA+NL M+PQLEQIHGEIRDHFRALANGFQ+LDKIKDS RQS QLEELT KMRECKRL+K
Sbjct: 1   MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVK 60

Query: 61  EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 120
           EFDRE+KDEE RN PEV+KQLNDEKQSMIKELNSYVALRKTYM+T+GNKK+ELFD GAG 
Sbjct: 61  EFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGV 120

Query: 121 S-EPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQ 179
           S EPTAEENVQ+AS MSNQELV+AGMK MDETDQAIERSKQVV QT+EVGTQTA  LKGQ
Sbjct: 121 SGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQ 180

Query: 180 TEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNP 239
           T+QMGR+VN LD+IQFSIKKASQLVKEIGRQVATDKCIM FLFLIVCGVVAII+VKIVNP
Sbjct: 181 TDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNP 240

Query: 240 NNKDIKDIPGLAPPAPTRRLLYVR 263
           NNKDI+DIPGLAPPA +R+LLY+R
Sbjct: 241 NNKDIRDIPGLAPPAQSRKLLYLR 264


>AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |
           chr1:17809223-17811656 REVERSE LENGTH=265
          Length = 265

 Score =  446 bits (1146), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/264 (83%), Positives = 246/264 (93%), Gaps = 1/264 (0%)

Query: 1   MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 60
           MA+ L M+P LEQIHGEIRDHFRALANGFQ+LDKIKDS+RQS QLEEL  KMR+CKRL+K
Sbjct: 1   MASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVK 60

Query: 61  EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 120
           EFDRE+KD E RN P+V+KQLNDEKQSMIKELNSYVALRKTY+NT+GNKK+ELFDTGAG 
Sbjct: 61  EFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGV 120

Query: 121 S-EPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQ 179
           S EPTAEENVQ+AS MSNQELV+AGMK MDETDQAIERSKQVVHQT+EVGTQTA  LKGQ
Sbjct: 121 SGEPTAEENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQ 180

Query: 180 TEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNP 239
           T+QMGR+VN+LD+IQFS+KKASQLVKEIGRQVATDKCIM FLFLIVCGV+AII+VKIVNP
Sbjct: 181 TDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNP 240

Query: 240 NNKDIKDIPGLAPPAPTRRLLYVR 263
           NNKDI+DIPGLAPPA +R+LLY R
Sbjct: 241 NNKDIRDIPGLAPPAQSRKLLYFR 264


>AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
           chr3:5970153-5972290 REVERSE LENGTH=216
          Length = 216

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/213 (85%), Positives = 197/213 (92%), Gaps = 1/213 (0%)

Query: 1   MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 60
           MA+NL M+PQLEQIHGEIRDHFRALANGFQ+LDKIKDS RQS QLEELT KMRECKRL+K
Sbjct: 1   MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVK 60

Query: 61  EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 120
           EFDRE+KDEE RN PEV+KQLNDEKQSMIKELNSYVALRKTYM+T+GNKK+ELFD GAG 
Sbjct: 61  EFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGV 120

Query: 121 S-EPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQ 179
           S EPTAEENVQ+AS MSNQELV+AGMK MDETDQAIERSKQVV QT+EVGTQTA  LKGQ
Sbjct: 121 SGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQ 180

Query: 180 TEQMGRIVNELDSIQFSIKKASQLVKEIGRQVA 212
           T+QMGR+VN LD+IQFSIKKASQLVKEIGRQV 
Sbjct: 181 TDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVC 213


>AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare
           11 | chr2:14831087-14832979 FORWARD LENGTH=265
          Length = 265

 Score =  315 bits (806), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 171/259 (66%), Positives = 206/259 (79%), Gaps = 7/259 (2%)

Query: 7   MTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIKEFDREI 66
           ++ +L +I G+I D FRAL+NGFQKL+KIKD+NRQS QLEELT KMR+CK LIK+FDREI
Sbjct: 7   VSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREI 66

Query: 67  KDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIG--NKKLELFDTGAGASEPT 124
           K  E  N    ++ LND +QSM+KELNSYVAL+K Y + +   NK+++LFD   G  E  
Sbjct: 67  KSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEH 123

Query: 125 AEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQTEQMG 184
            EENV LAS MSNQEL++ G   MD+TDQAIER K++V +T+ VGT T+  LK QTEQM 
Sbjct: 124 MEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMS 183

Query: 185 RIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDI 244
           R+VNELDSI FS+KKAS+LVKEIGRQVATDKCIM FLFLIV GV+AII+VKIVNPNNKDI
Sbjct: 184 RVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDI 243

Query: 245 KDIP--GLAPPAPTRRLLY 261
           +DIP  GLAPPA  RRLL+
Sbjct: 244 RDIPGVGLAPPAMNRRLLW 262