Miyakogusa Predicted Gene

Lj4g3v2249040.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2249040.2 Non Chatacterized Hit- tr|J3KUY8|J3KUY8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB0093,65.62,5e-16,Nucleotidyltransferase,NULL;
HD-domain/PDEase-like,NULL; EF-hand,NULL; no description,EF-hand-like
d,CUFF.50553.2
         (574 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17470.1 | Symbols: ATCRSH, CRSH | Ca2+-activated RelA/spot h...   625   e-179
AT4G02260.3 | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 | chr...   147   2e-35
AT4G02260.2 | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 | chr...   147   3e-35
AT3G14050.1 | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolog...   143   3e-34
AT1G54130.1 | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog...   142   5e-34
AT4G02260.1 | Symbols: RSH1, AT-RSH1, ATRSH1 | RELA/SPOT homolog...   142   6e-34

>AT3G17470.1 | Symbols: ATCRSH, CRSH | Ca2+-activated RelA/spot
           homolog | chr3:5979868-5981968 FORWARD LENGTH=583
          Length = 583

 Score =  625 bits (1612), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/532 (60%), Positives = 397/532 (74%), Gaps = 7/532 (1%)

Query: 50  SAPRACAAAEVTGGGKMVMELVGAFNELTERMKVX--XXXXXXXXXXXXXXXIPVLQTSP 107
           +A  + A +    GGKMV+ELVGAFNE+TERM                    IP+LQ+ P
Sbjct: 45  TAIESTARSPEAAGGKMVVELVGAFNEVTERMNSVWLSTSSSRLLFKALKLSIPILQSLP 104

Query: 108 VSADGRSPLSKALSLAMILADLQMDAEVISAGILREVLEVGALSINEIQSEIGAATAHLV 167
           +++DGRSPLSKALSL++ILADLQMDAEVISA IL EV++  A+SI E++  IG  TAHL+
Sbjct: 105 LASDGRSPLSKALSLSIILADLQMDAEVISASILSEVVDANAISIYEVRDHIGTGTAHLL 164

Query: 168 YESLRVKNIPSRIDVLDDDNAAALRKFCLTYYDIRALILDLALKLDMMRHIAYLPRYQQQ 227
           +E  RVKNIP ++DVLDD+ AA+LRKF LTYYDIRA+I+DL  KLD MRH+ +LPRY+QQ
Sbjct: 165 HEIFRVKNIPFKVDVLDDETAASLRKFYLTYYDIRAVIMDLVSKLDEMRHLDHLPRYRQQ 224

Query: 228 IRSLQVMKIHAPLAHALGTTYLSLELEDLSFQYLFPYSYLYVDTWLTSHETGDKPLIDVY 287
           I SL+V+KI++PLAHA+G  +LSLELED+SF+YLFP SY+Y+D+WL  HE G KPLIDVY
Sbjct: 225 ILSLEVLKIYSPLAHAVGANHLSLELEDISFRYLFPCSYIYLDSWLRGHENGSKPLIDVY 284

Query: 288 KEELLQTLEADPLIAELVDDISIKGRYKSRYSTMKKLLKDGRRPEDVNDVLGLRVVLNPK 347
           KE+L ++L+ D ++AE+V+D+ IKGRYKSRYS MKKLL+DGR+PE+VNDVLGLRV+L P 
Sbjct: 285 KEQLHRSLKDDLVLAEMVNDVYIKGRYKSRYSMMKKLLRDGRKPEEVNDVLGLRVILMPN 344

Query: 348 PGDGALEAGERACYRAHEIIQSMWKEIPYRTKDYIARPKANGYRSLHMAVDVSDNCRTRP 407
                +E GE+ACYR  EII+S+WKEIP+RTKDYIARPK NGYRSLHMAVDVSD+ + RP
Sbjct: 345 SVVNDVEVGEKACYRTSEIIRSLWKEIPHRTKDYIARPKENGYRSLHMAVDVSDSDQIRP 404

Query: 408 LMEIQIRTTEMDRLAVGGTDSHSLYKAGLTDPQEAKRLKTIMXXXXXXXXXXXXXXPGAI 467
           LMEIQIRT +MD  A  GT SHSLYK GLTDP+EAKRLK IM                  
Sbjct: 405 LMEIQIRTMDMDGSANAGTASHSLYKGGLTDPKEAKRLKAIMLAAADLAAIRLKDISSNK 464

Query: 468 HKGIE--IDQRDRVFRLLDKNGDGKISIEELAEVMEELGAPGEDAKDMMQXXXXXXXXXX 525
           H+  +   +QRDRVF LLDKNGDG ISIEEL EVMEELGAPGEDA++MMQ          
Sbjct: 465 HQSFKTTTNQRDRVFCLLDKNGDGMISIEELMEVMEELGAPGEDAEEMMQLLDSNSDGSL 524

Query: 526 XXXEFHMFQNQIELVHNLEDRDDQYKKMLDEKLH---MADDSGLIQVYNKEF 574
              EF  FQ Q+E +   EDRD++YK +LDEKLH     D +GLIQ+YNKE 
Sbjct: 525 SSDEFDTFQKQVEFMRKWEDRDNEYKSLLDEKLHDLPHQDTTGLIQLYNKEL 576


>AT4G02260.3 | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 |
           chr4:985451-990697 FORWARD LENGTH=816
          Length = 816

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 168/316 (53%), Gaps = 12/316 (3%)

Query: 120 LSLAMILADLQMDAEVISAGILREVLE-VGALSINEIQSEIGAATAHLVYESLRVKNI-- 176
           +++A IL +L++D E I AG+L + +E    ++  +I+ E GA   H+V    +V  +  
Sbjct: 177 VAVARILGELELDWESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGK 236

Query: 177 ---PSRIDVLDDDNAAALRKFCLTYYD-IRALILDLALKLDMMRHIAYLPRYQQQIRSLQ 232
               +  + + D  A  LR+  L   D +R +I+ LA +L  MR + ++P ++Q   + +
Sbjct: 237 LKCKTESETIQDVKADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGE 296

Query: 233 VMKIHAPLAHALGTTYLSLELEDLSFQYLFPYSYLYVDTWLTS-HETGDKPLIDVYKEEL 291
            +++ APLA  LG   +  ELE+LSF Y+    Y  V + + + ++  +K L +  +  L
Sbjct: 297 TLQVFAPLAKLLGMYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRI-L 355

Query: 292 LQTLEADPLIAELVDDISIKGRYKSRYSTMKKLLKDGRRPEDVNDVLGLRVVLNPKP--G 349
           ++ +E D  +  +  +  ++   K  YS  K  LK      D N +  LR+V+ PKP  G
Sbjct: 356 VKKIEDDQFLDLVTVNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQLRIVVKPKPSVG 415

Query: 350 DGALEAGERACYRAHEIIQSMWKEIPYRTKDYIARPKANGYRSLHMAVDVSDNCRTRPLM 409
            G L + ++ CY    ++  +WK IP   KDYIA PK NGY+SLH  V +     +   +
Sbjct: 416 VGPLCSPQQICYHVLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTV-IPFLYESMFRL 474

Query: 410 EIQIRTTEMDRLAVGG 425
           E+QIRT EMD +A  G
Sbjct: 475 EVQIRTEEMDLIAERG 490


>AT4G02260.2 | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 |
           chr4:985451-991178 FORWARD LENGTH=883
          Length = 883

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 168/316 (53%), Gaps = 12/316 (3%)

Query: 120 LSLAMILADLQMDAEVISAGILREVLE-VGALSINEIQSEIGAATAHLVYESLRVKNI-- 176
           +++A IL +L++D E I AG+L + +E    ++  +I+ E GA   H+V    +V  +  
Sbjct: 177 VAVARILGELELDWESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGK 236

Query: 177 ---PSRIDVLDDDNAAALRKFCLTYYD-IRALILDLALKLDMMRHIAYLPRYQQQIRSLQ 232
               +  + + D  A  LR+  L   D +R +I+ LA +L  MR + ++P ++Q   + +
Sbjct: 237 LKCKTESETIQDVKADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGE 296

Query: 233 VMKIHAPLAHALGTTYLSLELEDLSFQYLFPYSYLYVDTWLTS-HETGDKPLIDVYKEEL 291
            +++ APLA  LG   +  ELE+LSF Y+    Y  V + + + ++  +K L +  +  L
Sbjct: 297 TLQVFAPLAKLLGMYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRI-L 355

Query: 292 LQTLEADPLIAELVDDISIKGRYKSRYSTMKKLLKDGRRPEDVNDVLGLRVVLNPKP--G 349
           ++ +E D  +  +  +  ++   K  YS  K  LK      D N +  LR+V+ PKP  G
Sbjct: 356 VKKIEDDQFLDLVTVNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQLRIVVKPKPSVG 415

Query: 350 DGALEAGERACYRAHEIIQSMWKEIPYRTKDYIARPKANGYRSLHMAVDVSDNCRTRPLM 409
            G L + ++ CY    ++  +WK IP   KDYIA PK NGY+SLH  V +     +   +
Sbjct: 416 VGPLCSPQQICYHVLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTV-IPFLYESMFRL 474

Query: 410 EIQIRTTEMDRLAVGG 425
           E+QIRT EMD +A  G
Sbjct: 475 EVQIRTEEMDLIAERG 490


>AT3G14050.1 | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolog 2
           | chr3:4650902-4653514 REVERSE LENGTH=709
          Length = 709

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 175/332 (52%), Gaps = 34/332 (10%)

Query: 113 RSP-LSKALSLAMILADLQMDAEVISAGILREVLEVGALSINEIQSEIGAATAHLVYESL 171
           R P L   +  AM+LA++  ++ V+ AG+L + ++   +S + I    GA  A LV    
Sbjct: 230 RDPYLQHCVETAMLLANIGANSTVVVAGLLHDTIDDSFMSYDYILRNFGAGVADLVEGVS 289

Query: 172 RVKNIPSRIDVLDDDNAAA--------LRKFCLTYYDIRALILDLALKLDMMRHIAYLPR 223
           ++    S++  L  +N  A        L    L   D RA+++ LA +L  M+ +  L  
Sbjct: 290 KL----SQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMKTLYALSP 345

Query: 224 YQQQIRSLQVMKIHAPLAHALGTTYLSLELEDLSFQYLFPYSYLYVDTWLTSHETGDKPL 283
            +QQ  + + ++I APLA+ LG +   ++LE+L F++L+P  +  + T L   ++ D+ +
Sbjct: 346 VKQQRFAKETLEIFAPLANRLGISTWKVQLENLCFKHLYPNQHNEMSTML--EDSFDEAM 403

Query: 284 IDVYKEELLQTLEADPLIAELVDDISIKGRYKSRYSTMKKLLKDGRRPEDVNDVLGLRVV 343
           I    E+L Q L+   +   +     + GR+KS YS   K+LK     ++++D+ GLR++
Sbjct: 404 ITSAIEKLEQALKKAGISYHV-----LCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLI 458

Query: 344 LNPKPGDGALEAGERACYRAHEIIQSMWKEIPYRTKDYIARPKANGYRSLHMAVDVSDNC 403
           ++           E  CY+A  ++ S+W E+P + KDYI  PK NGY+SLH    V DN 
Sbjct: 459 VD----------NEGDCYKALGVVHSLWSEVPGKLKDYITHPKFNGYQSLHTV--VMDN- 505

Query: 404 RTRPLMEIQIRTTEMDRLAVGGTDSHSLYKAG 435
            T PL E+QIRT EM   A  G  +H  YK G
Sbjct: 506 GTVPL-EVQIRTQEMHLQAEFGFAAHWRYKEG 536


>AT1G54130.1 | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3
           | chr1:20211177-20213761 FORWARD LENGTH=715
          Length = 715

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 175/334 (52%), Gaps = 33/334 (9%)

Query: 110 ADGRSPLSKALSLAMILADLQMDAEVISAGILREVLEVGALSINEIQSEIGAATAHLVYE 169
           A G   L   +  AM+LAD+  ++ V+ AGIL + L+   +S + I    G+  A LV  
Sbjct: 232 ATGDPYLQHCVETAMLLADIGANSTVVVAGILHDTLDDSFMSYDYILRTFGSGVADLVEG 291

Query: 170 SLRVKNIPSRIDVLDDDNAAA--------LRKFCLTYYDIRALILDLALKLDMMRHIAYL 221
             ++    S++  L  +N  A        L    L   D RA+++ LA +L  M  +  L
Sbjct: 292 VSKL----SQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLYAL 347

Query: 222 PRYQQQIRSLQVMKIHAPLAHALGTTYLSLELEDLSFQYLFPYSYLYVDTWLTSHETGDK 281
           P  ++Q  + + ++I APLA+ LG +   ++LE+L F++L P  +  +   L   ++ D+
Sbjct: 348 PPVKRQRFAKETLEIFAPLANRLGISSWKVKLENLCFKHLHPDQHHEMSDML--EDSFDE 405

Query: 282 PLIDVYKEELLQTLEADPLIAELVDDISIKGRYKSRYSTMKKLLKDGRRPEDVNDVLGLR 341
            +I    E+L Q L+ + +   +V      GR+KS YS   K+LK     ++++D+ GLR
Sbjct: 406 AMITSAIEKLEQALKKEGISYHVV-----SGRHKSLYSIYCKMLKKKLTMDEIHDIHGLR 460

Query: 342 VVLNPKPGDGALEAGERACYRAHEIIQSMWKEIPYRTKDYIARPKANGYRSLHMAVDVSD 401
           ++++           E+ CY+A  ++  +W E+P + KDYI+ PK NGY+SLH  V + D
Sbjct: 461 LIVD----------NEKDCYKALGVVHKLWSEVPGKLKDYISHPKFNGYQSLHTVV-MGD 509

Query: 402 NCRTRPLMEIQIRTTEMDRLAVGGTDSHSLYKAG 435
              T PL E+QIRT EM   A  G  +H  YK G
Sbjct: 510 G--TIPL-EVQIRTKEMHLQAEFGFAAHWRYKEG 540


>AT4G02260.1 | Symbols: RSH1, AT-RSH1, ATRSH1 | RELA/SPOT homolog 1
           | chr4:985451-991178 FORWARD LENGTH=884
          Length = 884

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 168/317 (52%), Gaps = 13/317 (4%)

Query: 120 LSLAMILADLQMDAEVISAGILREVLE-VGALSINEIQSEIGAATAHLVYESLRVKNI-- 176
           +++A IL +L++D E I AG+L + +E    ++  +I+ E GA   H+V    +V  +  
Sbjct: 177 VAVARILGELELDWESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGK 236

Query: 177 ---PSRIDVLDDDNAAALRKFCLTYYD-IRALILDLALKLDMMRHIAYLPRYQQQIRSLQ 232
               +  + + D  A  LR+  L   D +R +I+ LA +L  MR + ++P ++Q   + +
Sbjct: 237 LKCKTESETIQDVKADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGE 296

Query: 233 VMKIHAPLAHALGTTYLSLELEDLSFQYLFPYSYLYVDTWLTS-HETGDKPLIDVYKEEL 291
            +++ APLA  LG   +  ELE+LSF Y+    Y  V + + + ++  +K L +  +  L
Sbjct: 297 TLQVFAPLAKLLGMYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRI-L 355

Query: 292 LQTLEADPLIAELVDDISIKGRYKSRYSTMKKLLKDGRRPEDVNDVLG-LRVVLNPKP-- 348
           ++ +E D  +  +  +  ++   K  YS  K  LK      D N +   LR+V+ PKP  
Sbjct: 356 VKKIEDDQFLDLVTVNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPSV 415

Query: 349 GDGALEAGERACYRAHEIIQSMWKEIPYRTKDYIARPKANGYRSLHMAVDVSDNCRTRPL 408
           G G L + ++ CY    ++  +WK IP   KDYIA PK NGY+SLH  V +     +   
Sbjct: 416 GVGPLCSPQQICYHVLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTV-IPFLYESMFR 474

Query: 409 MEIQIRTTEMDRLAVGG 425
           +E+QIRT EMD +A  G
Sbjct: 475 LEVQIRTEEMDLIAERG 491