Miyakogusa Predicted Gene

Lj4g3v2238990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2238990.1 tr|I1LYF8|I1LYF8_SOYBN tRNA pseudouridine
synthase (Fragment) OS=Glycine max PE=3 SV=1,86.99,0,hisT_truA: tRNA
pseudouridine(38-40) synthase,Pseudouridine synthase I, TruA;
PSEUDOURIDYLATE SYNTHA,CUFF.50549.1
         (273 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06950.1 | Symbols:  | Pseudouridine synthase family protein ...   401   e-112
AT1G34150.1 | Symbols:  | Pseudouridine synthase family protein ...    82   3e-16
AT1G09800.1 | Symbols:  | Pseudouridine synthase family protein ...    71   7e-13
AT5G35400.1 | Symbols:  | Pseudouridine synthase family protein ...    53   2e-07
AT5G35400.2 | Symbols:  | Pseudouridine synthase family protein ...    53   2e-07

>AT3G06950.1 | Symbols:  | Pseudouridine synthase family protein |
           chr3:2192869-2194254 FORWARD LENGTH=323
          Length = 323

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/269 (70%), Positives = 219/269 (81%), Gaps = 1/269 (0%)

Query: 6   SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
           +GWQYQ SPPT+Q ++E+AL + T+L RK+L L+GA RTDAGVHAWGQVAHFVTPFNY  
Sbjct: 55  AGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNYTS 114

Query: 66  LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
           L+  HAALNGLLP DIRVRE+S    EFHARFSA SK+Y Y+IYNDT MDPFQRH+AYH 
Sbjct: 115 LDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAYHC 174

Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
            YKLN++ MREAA  +VGKH+FSAFANA+  DGVPDP+K I RFDV +MG+LLQLEVEGS
Sbjct: 175 AYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGSLLQLEVEGS 234

Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKY-ALFAPPHGLCLVSINYN 244
           GFLYRQVRNM ALL+QIGKEAL  DI+  IL ++DR+ LAKY +L A PHGLCLVS+ Y 
Sbjct: 235 GFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYK 294

Query: 245 ESHLLPPPGCPANSFGRHHTIRKCKVPFY 273
           E HL  P  CP  S GRHHTI KCK+PFY
Sbjct: 295 EDHLKLPLDCPVTSSGRHHTITKCKLPFY 323


>AT1G34150.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:12436086-12439237 FORWARD LENGTH=446
          Length = 446

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 109/264 (41%), Gaps = 43/264 (16%)

Query: 15  PTVQCVVERALTRATKL--QRKDLCLVGASRTDAGVHAWGQV------AHFVTPFNYDKL 66
           P+++  V +AL R   L   +KD C     RTD GV + GQV      +   +P    K 
Sbjct: 114 PSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKA 173

Query: 67  E-----------DIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMD 115
           +           D    LN  LP DIRV   SP P +FHARFS  ++ Y Y  +      
Sbjct: 174 QVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQN--- 230

Query: 116 PFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVK--- 172
                        LN + M  A + ++G+H+F  F      + V    + +  F+V    
Sbjct: 231 -------------LNLSAMDFAGKKFIGEHDFRNFCKMDVAN-VHCYTRRVTFFEVSPCQ 276

Query: 173 ---EMGALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYAL 229
              E   L    + GS FL+ Q+R M A+L  IG+     D+I  +L ++      +Y L
Sbjct: 277 NSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQY-L 335

Query: 230 FAPPHGLCLVSINYNESHLLPPPG 253
            A    L L +  +     +  PG
Sbjct: 336 LASEIPLVLRTCEFENVDFICSPG 359


>AT1G09800.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:3177121-3180336 REVERSE LENGTH=372
          Length = 372

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 121/311 (38%), Gaps = 83/311 (26%)

Query: 6   SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHF-VTPFNYD 64
           SG Q Q    TV  V++ A  +      K  C   +SRTDAGVHA   V H  V   +  
Sbjct: 69  SGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFC---SSRTDAGVHALSNVCHVDVERISKR 125

Query: 65  KLEDI---------HAALNGLL---PSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDT 112
           K  ++           A+N  L     D+ V ++  VP  +HAR+ A+ + Y Y++ + +
Sbjct: 126 KPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGS 185

Query: 113 IMDPF---QRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRF 169
             DP    ++   +H P +LN   M+EA +  VG H+FS+F  A        P++ +   
Sbjct: 186 --DPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQ--AKSPMRSLDEL 241

Query: 170 DVKEM----------------------------------GALLQL-EVEGS--------- 185
           ++ E+                                  G    + EVEGS         
Sbjct: 242 NITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTEGDSFGRR 301

Query: 186 -------------GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAP 232
                        GFLY QVR +   L  +G   L    ++ IL +   K ++     AP
Sbjct: 302 RRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEA---KTVSAAKPMAP 358

Query: 233 PHGLCLVSINY 243
             GL L  + Y
Sbjct: 359 ASGLYLARVRY 369


>AT5G35400.1 | Symbols:  | Pseudouridine synthase family protein |
           chr5:13599416-13602240 REVERSE LENGTH=420
          Length = 420

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 7   GWQYQMSPPTVQCVVERAL------TRATKLQRKDLCLVG----ASRTDAGVHAWGQVAH 56
           GWQ Q    TVQ VVE++L       +A  L++K   L G    A RTD GV A  QV  
Sbjct: 108 GWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCS 167

Query: 57  FVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHY 106
           F T     +   I  A+N      +RV  IS V   FH  FSAK + Y Y
Sbjct: 168 FYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLY 217


>AT5G35400.2 | Symbols:  | Pseudouridine synthase family protein |
           chr5:13599416-13602240 REVERSE LENGTH=471
          Length = 471

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 7   GWQYQMSPPTVQCVVERAL------TRATKLQRKDLCLVG----ASRTDAGVHAWGQVAH 56
           GWQ Q    TVQ VVE++L       +A  L++K   L G    A RTD GV A  QV  
Sbjct: 108 GWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCS 167

Query: 57  FVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHY 106
           F T     +   I  A+N      +RV  IS V   FH  FSAK + Y Y
Sbjct: 168 FYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLY 217