Miyakogusa Predicted Gene

Lj4g3v2228960.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2228960.1 Non Chatacterized Hit- tr|E1Z2Z8|E1Z2Z8_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,32.19,1e-18,zf-SNAP50_C,snRNA-activating protein complex,
subunit 3; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,,CUFF.50546.1
         (361 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28560.1 | Symbols: SRD2 | snRNA activating complex family pr...   342   2e-94
AT1G28560.2 | Symbols: SRD2 | snRNA activating complex family pr...   341   4e-94

>AT1G28560.1 | Symbols: SRD2 | snRNA activating complex family
           protein | chr1:10038197-10040382 REVERSE LENGTH=375
          Length = 375

 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 184/380 (48%), Positives = 245/380 (64%), Gaps = 26/380 (6%)

Query: 3   MALKEVF----------EGRENNENHP-PLLNQPNTGCHVKNSRKKKRGTNNSIL----- 46
           MA+KE F          E   N  +H  PL  +      VKN+  KKR   N+ +     
Sbjct: 1   MAMKEAFPEDYLSQEELEPSLNVSHHENPLAGRAKRKRTVKNTEVKKRTLKNTEVMKMTE 60

Query: 47  ---DSDCMDKVEQIVTIKQKQEEDMAAARLHSFNPVCRTNESACKSL-GTERMMALRSIS 102
              +   + KVEQ+  +KQKQEED AA  LH F+    T +       G E+M +LR I 
Sbjct: 61  KKTEEAYLVKVEQLAKLKQKQEEDKAAVTLHCFSKTSETGKDVVAPPEGFEQMQSLRFID 120

Query: 103 SS-RKVNSGGLQEHTPVQYPEVVLSVEIYHNVRKGLKTQELLVLGRQTLTSLRDKIFCST 161
           ++  K+    +Q      +PEV+L VEIY N RK +KTQE LVLGRQ LT L+D I C+T
Sbjct: 121 NNYTKLKPSDIQGQVDPLFPEVILCVEIY-NSRK-VKTQEFLVLGRQMLTELKDNIHCAT 178

Query: 162 DQVMQKAGQHDPSGFFLIEDIFYTDLRDPSAIDLTRPILDWVQNSNEEAQKKWEYIITGE 221
           DQVMQKAG++DPSG+FLIED+F+ DLR+PSA D + PILDW+ NS +EA KKWE ++TGE
Sbjct: 179 DQVMQKAGKYDPSGYFLIEDVFHNDLRNPSAKDYSYPILDWLWNSKDEALKKWECVLTGE 238

Query: 222 LKQKQKAIMGTVSAPRMPHFSSIEMHKIRFCDLSFRLGAGYLYCHQGECSHTLVVRDMRL 281
           L++KQK ++G   +  +P + + +M    FCD+ FR+GA Y+YCHQG+C HT+V+RDMR+
Sbjct: 239 LQKKQKLVLGEAKSVDLPRYRTADMQSTHFCDIRFRVGASYVYCHQGDCKHTIVIRDMRM 298

Query: 282 MHPDDVNNRAVYPRVTFQLKMRFQKCRVCKIFRATKVTVDDRWTSENPCYFCDDCFALLH 341
            HP+DV NRA YP + F  K R QKC VCKI RA+KV VDD+W SEN  YFCD CF LLH
Sbjct: 299 SHPEDVQNRAAYP-IMFWPKRRIQKCGVCKIKRASKVAVDDKWASENSSYFCDVCFELLH 357

Query: 342 LAEDGSPLYTEYLEYNYHHD 361
            +E+G PL  ++  ++Y H+
Sbjct: 358 -SEEG-PLNCDFPVFDYVHE 375


>AT1G28560.2 | Symbols: SRD2 | snRNA activating complex family
           protein | chr1:10038197-10040382 REVERSE LENGTH=386
          Length = 386

 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 176/352 (50%), Positives = 235/352 (66%), Gaps = 15/352 (4%)

Query: 20  PLLNQPNTGCHVKNSRKKKRGTNNSIL--------DSDCMDKVEQIVTIKQKQEEDMAAA 71
           PL  +      VKN+  KKR   N+ +        +   + KVEQ+  +KQKQEED AA 
Sbjct: 40  PLAGRAKRKRTVKNTEVKKRTLKNTEVMKMTEKKTEEAYLVKVEQLAKLKQKQEEDKAAV 99

Query: 72  RLHSFNPVCRTNESACKSL-GTERMMALRSISSS-RKVNSGGLQEHTPVQYPEVVLSVEI 129
            LH F+    T +       G E+M +LR I ++  K+    +Q      +PEV+L VEI
Sbjct: 100 TLHCFSKTSETGKDVVAPPEGFEQMQSLRFIDNNYTKLKPSDIQGQVDPLFPEVILCVEI 159

Query: 130 YHNVRKGLKTQELLVLGRQTLTSLRDKIFCSTDQVMQKAGQHDPSGFFLIEDIFYTDLRD 189
           Y N RK +KTQE LVLGRQ LT L+D I C+TDQVMQKAG++DPSG+FLIED+F+ DLR+
Sbjct: 160 Y-NSRK-VKTQEFLVLGRQMLTELKDNIHCATDQVMQKAGKYDPSGYFLIEDVFHNDLRN 217

Query: 190 PSAIDLTRPILDWVQNSNEEAQKKWEYIITGELKQKQKAIMGTVSAPRMPHFSSIEMHKI 249
           PSA D + PILDW+ NS +EA KKWE ++TGEL++KQK ++G   +  +P + + +M   
Sbjct: 218 PSAKDYSYPILDWLWNSKDEALKKWECVLTGELQKKQKLVLGEAKSVDLPRYRTADMQST 277

Query: 250 RFCDLSFRLGAGYLYCHQGECSHTLVVRDMRLMHPDDVNNRAVYPRVTFQLKMRFQKCRV 309
            FCD+ FR+GA Y+YCHQG+C HT+V+RDMR+ HP+DV NRA YP + F  K R QKC V
Sbjct: 278 HFCDIRFRVGASYVYCHQGDCKHTIVIRDMRMSHPEDVQNRAAYP-IMFWPKRRIQKCGV 336

Query: 310 CKIFRATKVTVDDRWTSENPCYFCDDCFALLHLAEDGSPLYTEYLEYNYHHD 361
           CKI RA+KV VDD+W SEN  YFCD CF LLH +E+G PL  ++  ++Y H+
Sbjct: 337 CKIKRASKVAVDDKWASENSSYFCDVCFELLH-SEEG-PLNCDFPVFDYVHE 386