Miyakogusa Predicted Gene

Lj4g3v2226760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2226760.1 Non Chatacterized Hit- tr|D7KRM4|D7KRM4_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,67.69,2e-18,seg,NULL; MOZART1,Protein of unknown function
DUF3743,CUFF.50545.1
         (74 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09550.1 | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protein...   102   5e-23
AT1G73790.1 | Symbols:  | Protein of unknown function (DUF3743) ...    94   2e-20

>AT4G09550.1 | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protein
          1 | chr4:6039706-6039921 FORWARD LENGTH=71
          Length = 71

 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 53/59 (89%)

Query: 1  MDPEAARIARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAVVVKELRKEK 59
          MD EA+R ARESL+L F MSNILDTGLDRHTLSVLIALCDLGVNPEALA VVKELR+E 
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRES 59


>AT1G73790.1 | Symbols:  | Protein of unknown function (DUF3743) |
          chr1:27745019-27745222 FORWARD LENGTH=67
          Length = 67

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 52/59 (88%)

Query: 1  MDPEAARIARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAVVVKELRKEK 59
          M+ EAA  ARESL+L F MSNIL+TGLDRHTLSVLIALCD+G+NPEALA +VKELR++ 
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDS 59