Miyakogusa Predicted Gene

Lj4g3v2225720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2225720.1 Non Chatacterized Hit- tr|I1LDZ3|I1LDZ3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8429 PE=,75.38,2e-18,no
description,Nucleic acid-binding, OB-fold; no description,NULL;
Nucleic acid-binding proteins,Nuc,CUFF.50540.1
         (403 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51...    98   1e-20
AT5G20850.1 | Symbols: ATRAD51, RAD51 | RAS associated with diab...    66   4e-11
AT1G79340.1 | Symbols: AtMC4, MC4 | metacaspase 4 | chr1:2984284...    63   3e-10
AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic...    62   6e-10
AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic...    62   6e-10
AT1G79330.1 | Symbols: AMC6, ATMCP2B, ATMC5, MC5 | metacaspase 5...    59   5e-09
AT1G79310.1 | Symbols: AtMC7, MC7 | metacaspase 7 | chr1:2983398...    59   6e-09
AT1G16420.1 | Symbols: ATMC8, MC8 | metacaspase 8 | chr1:5612304...    59   6e-09
AT1G79320.1 | Symbols: AtMC6, MC6 | metacaspase 6 | chr1:2983668...    56   4e-08

>AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51)
           family protein | chr3:8097948-8100740 REVERSE LENGTH=344
          Length = 344

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 55/65 (84%)

Query: 58  SAKRSEEPFRLLIVDSVIALFRVDFSGRGELAERQQNLFPKVYPLVKICVKFNVAVYMTN 117
           +AK SEEPFR+LIVDS+IALFRVDF+GRGELA+RQQ L   +  L+KI  +FNVAVYMTN
Sbjct: 214 AAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTN 273

Query: 118 QVIVE 122
           QVI +
Sbjct: 274 QVIAD 278


>AT5G20850.1 | Symbols: ATRAD51, RAD51 | RAS associated with
           diabetes protein 51 | chr5:7070758-7072860 REVERSE
           LENGTH=342
          Length = 342

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 55  MESSAKRSEEPFRLLIVDSVIALFRVDFSGRGELAERQQNLFPKVYPLVKICVKFNVAVY 114
           +E+++   E  F LLIVDS  AL+R DFSGRGEL+ RQ +L   +  L K+  +F VAV 
Sbjct: 208 LEAASMMIETRFALLIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267

Query: 115 MTNQVI--VERNLLYA 128
           +TNQV+  V+ + L+A
Sbjct: 268 ITNQVVAQVDGSALFA 283


>AT1G79340.1 | Symbols: AtMC4, MC4 | metacaspase 4 |
           chr1:29842849-29844368 FORWARD LENGTH=418
          Length = 418

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 25/156 (16%)

Query: 177 TKRDLLMAMARDKT-AELESYMN-------TLVECYGFDLRNIVILLPNEKGYTQPQKEI 228
           TK+ +L+ +    T AEL   +N        LVE YGF   NI +L+  ++  TQP  + 
Sbjct: 2   TKKAVLIGINYPGTKAELRGCVNDVRRMYKCLVERYGFSEENITVLIDTDESSTQPTGKN 61

Query: 229 VRSEVKSLIQESNEGDILLLHISAHVTLKYPGMVG-----------IPLLQTGDRQFIHA 277
           +R  +  L++ ++ GD+L++H S H T + P   G           +P     D   I  
Sbjct: 62  IRRALADLVESADSGDVLVVHYSGHGT-RLPAETGEDDDTGFDECIVPC----DMNLITD 116

Query: 278 DFWDKMVQCVHHRRAKLTVTLETCHAGALFNSARQQ 313
           D +  +V  V     ++T+  ++CH+G L + A++Q
Sbjct: 117 DDFRDLVDKVPP-GCRMTIISDSCHSGGLIDEAKEQ 151


>AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
          replication protein A 1A | chr2:2585215-2587601 FORWARD
          LENGTH=617
          Length = 617

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 38/44 (86%)

Query: 1  MLATQLNDQLRAGLVKRGSVVQLIEYICSPIQNRKIIVALNMET 44
          M+A QLND++++G  ++GS+VQLI+YICS ++ RK+IV LNMET
Sbjct: 34 MVAVQLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMET 77


>AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
           replication protein A 1A | chr2:2585215-2587601 FORWARD
           LENGTH=640
          Length = 640

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 38/44 (86%)

Query: 1   MLATQLNDQLRAGLVKRGSVVQLIEYICSPIQNRKIIVALNMET 44
           M+A QLND++++G  ++GS+VQLI+YICS ++ RK+IV LNMET
Sbjct: 57  MVAVQLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMET 100


>AT1G79330.1 | Symbols: AMC6, ATMCP2B, ATMC5, MC5 | metacaspase 5 |
           chr1:29838722-29840137 FORWARD LENGTH=410
          Length = 410

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 17/126 (13%)

Query: 199 TLVECYGFDLRNIVILLPNEKGYTQPQKEIVRSEVKSLIQESNEGDILLLHISAHVTLKY 258
           +LV+ +GF  RNI  L+  ++  T+P  + +R  + +L++ +  GD+L++H S H T + 
Sbjct: 32  SLVDRFGFSERNITELIDTDESSTKPTGKNIRRALLNLVESAKPGDVLVVHYSGHGT-RL 90

Query: 259 PGMVG-----------IPLLQTGDRQFIHADFWDKMVQCVHHRRAKLTVTLETCHAGALF 307
           P   G           +P     D   I  D +  +V+ V  + A +T+  ++CH+G L 
Sbjct: 91  PAETGEDDDTGYDECIVPC----DMNLITDDEFRDLVEKV-PKEAHITIISDSCHSGGLI 145

Query: 308 NSARQQ 313
           + A++Q
Sbjct: 146 DEAKEQ 151


>AT1G79310.1 | Symbols: AtMC7, MC7 | metacaspase 7 |
           chr1:29833986-29835412 FORWARD LENGTH=403
          Length = 403

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 17/151 (11%)

Query: 178 KRDLLMAMAR-DKTAELESYMN-------TLVECYGFDLRNIVILLPNEKGYTQPQKEIV 229
           KR LL+ +     T EL+  +N        LV+ +GF   +I +L+  ++ YTQP  + +
Sbjct: 3   KRALLIGINYPGTTEELQGCVNDVHRMHKCLVDRFGFAEEDITVLIDTDESYTQPTGKNI 62

Query: 230 RSEVKSLIQESNEGDILLLHISAHVTLKYPGMVG-------IPLLQTGDRQFIHADFWDK 282
           R  +  LI+ +  GD+L +H S H T + P   G          +   D   I  D +  
Sbjct: 63  RQALSELIKPAKSGDVLFVHYSGHGT-RVPPETGEEDDTGFDECIVPSDLNPIPDDDFRD 121

Query: 283 MVQCVHHRRAKLTVTLETCHAGALFNSARQQ 313
           +V+ V     ++T+  ++CH+G L + A++Q
Sbjct: 122 LVEQVPE-GCQITIVSDSCHSGGLIDEAKEQ 151


>AT1G16420.1 | Symbols: ATMC8, MC8 | metacaspase 8 |
           chr1:5612304-5613829 REVERSE LENGTH=381
          Length = 381

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 177 TKRDLLMAMARDKTA-ELESYMN-------TLVECYGFDLRNIVILLPNEKGYTQPQKEI 228
            K+ LL+ +    TA EL   +N        L+E YGF  ++IVI++  +K   QP  + 
Sbjct: 2   AKKALLIGINYPGTAVELRGCVNDVHRMQKCLIELYGFANKDIVIMIDTDKSCIQPTGKN 61

Query: 229 VRSEVKSLIQESNEGDILLLHISAHVTLKYPGM------VGIP-LLQTGDRQFIHADFWD 281
           +  E+ +LI     GD L+ H S H T   PG+       G    +   D   I    + 
Sbjct: 62  ICDELDNLIASGQSGDFLVFHYSGHGTRIPPGIEDSEDPTGFDECITPCDMNLIKDQQFR 121

Query: 282 KMVQCVHHRRAKLTVTLETCHAGALFNSARQQ 313
           +MV  V     +LT+  ++CH+G L    ++Q
Sbjct: 122 EMVSRVKE-GCQLTIISDSCHSGGLIQEVKEQ 152


>AT1G79320.1 | Symbols: AtMC6, MC6 | metacaspase 6 |
           chr1:29836686-29837908 FORWARD LENGTH=368
          Length = 368

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 199 TLVECYGFDLRNIVILLPNEKGYTQPQKEIVRSEVKSLIQESNEGDILLLHISAHVTLKY 258
           +LVE YGF   NI +L+  +    +P  + +R  +  L++ +  GD+L +H S H T + 
Sbjct: 32  SLVERYGFSEENIKMLIDTDSSSIKPTGKNIRQALLDLVEPAKSGDVLFVHYSGHGT-RL 90

Query: 259 PGMVG-------IPLLQTGDRQFIHADFWDKMVQCVHHRRAKLTVTLETCHAGALFNSAR 311
           P   G          +   D   I  D +  +V  V  +   +T+  ++CH+G L + A+
Sbjct: 91  PAETGEDDDTGYDECIVPSDMNLITDDDFRDLVDMV-PKDCPITIISDSCHSGGLIDEAK 149

Query: 312 QQ 313
           +Q
Sbjct: 150 EQ 151