Miyakogusa Predicted Gene

Lj4g3v2225710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2225710.1 tr|Q84MB9|Q84MB9_ARATH At1g48300 OS=Arabidopsis
thaliana PE=2 SV=1,46.6,1e-18,coiled-coil,NULL; seg,NULL;
Thioredoxin-like,Thioredoxin-like fold; no
description,Thioredoxin-like ,CUFF.50542.1
         (334 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48300.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    95   7e-20

>AT1G48300.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 15 growth stages; Has 96 Blast hits to 87
           proteins in 37 species: Archae - 0; Bacteria - 2;
           Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other
           Eukaryotes - 15 (source: NCBI BLink). |
           chr1:17847391-17848338 FORWARD LENGTH=285
          Length = 285

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 228 PQKRIEVCMGNKCKKSGAAALMQQFESXXXXXXXXXXXCKCMGKCKSAPNVRIQNAVDHE 287
           P  R+EVCMG KCK+SG A L+ +F+            CKCMGKC+  PNVR+    D  
Sbjct: 183 PLNRVEVCMGGKCKRSGGALLLDEFQRAMTGFEGSAVACKCMGKCRDGPNVRVVKETDAV 242

Query: 288 LAEGLNDSVKVPANPLCIGVGLEDVDAVVARFLGENYQDMGM 329
               + DSV+ P+  LC+GVGL+DV+ +V  F  E     G+
Sbjct: 243 ----MTDSVRTPSKTLCVGVGLQDVETIVTSFFDEECSREGL 280