Miyakogusa Predicted Gene

Lj4g3v2225630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2225630.1 CUFF.50539.1
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28050.1 | Symbols:  | Cytidine/deoxycytidylate deaminase fam...   290   4e-79
AT5G28050.2 | Symbols:  | Cytidine/deoxycytidylate deaminase fam...   288   1e-78
AT3G05300.1 | Symbols:  | Cytidine/deoxycytidylate deaminase fam...   138   2e-33
AT1G68720.1 | Symbols: TADA, ATTADA | tRNA arginine adenosine de...    79   1e-15
AT1G48175.1 | Symbols: emb2191 | Cytidine/deoxycytidylate deamin...    47   5e-06

>AT5G28050.1 | Symbols:  | Cytidine/deoxycytidylate deaminase family
           protein | chr5:10044209-10045755 REVERSE LENGTH=185
          Length = 185

 Score =  290 bits (742), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 140/186 (75%), Positives = 155/186 (83%), Gaps = 1/186 (0%)

Query: 1   MEEVNVVETKDGTVSVATAFAGHQEAVQDRDHKFLGKAVEEAYKGVDCGHGGPFGAVIVR 60
           MEE  V E KDGT+SVA+AF+GHQ+AV D DHKFL +AVEEAYKGVDCG GGPFGAVIV 
Sbjct: 1   MEEAKV-EAKDGTISVASAFSGHQQAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVH 59

Query: 61  NDEVVVSCHNMVLNHTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHL 120
           N+EVV SCHNMVL +TDPTAHAEVTAIREACKKLN+IELS+CEIYASCEPCPMCFGAIHL
Sbjct: 60  NNEVVASCHNMVLKYTDPTAHAEVTAIREACKKLNKIELSECEIYASCEPCPMCFGAIHL 119

Query: 121 SRIKRLVYGAKXXXXXXXXXXXXXXXXLRGTGFYQKAQLEIKRADGNGALIAEEVFQKTK 180
           SR+KRLVYGAK                LRGTG YQK+ LEIK+ADGNGA IAE+VFQ TK
Sbjct: 120 SRLKRLVYGAKAEAAIAIGFDDFIADALRGTGVYQKSSLEIKKADGNGAAIAEQVFQNTK 179

Query: 181 EKFQMY 186
           EKF++Y
Sbjct: 180 EKFRLY 185


>AT5G28050.2 | Symbols:  | Cytidine/deoxycytidylate deaminase family
           protein | chr5:10044209-10045484 REVERSE LENGTH=204
          Length = 204

 Score =  288 bits (737), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/180 (75%), Positives = 152/180 (84%)

Query: 7   VETKDGTVSVATAFAGHQEAVQDRDHKFLGKAVEEAYKGVDCGHGGPFGAVIVRNDEVVV 66
           +E KDGT+SVA+AF+GHQ+AV D DHKFL +AVEEAYKGVDCG GGPFGAVIV N+EVV 
Sbjct: 25  LEAKDGTISVASAFSGHQQAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVA 84

Query: 67  SCHNMVLNHTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRL 126
           SCHNMVL +TDPTAHAEVTAIREACKKLN+IELS+CEIYASCEPCPMCFGAIHLSR+KRL
Sbjct: 85  SCHNMVLKYTDPTAHAEVTAIREACKKLNKIELSECEIYASCEPCPMCFGAIHLSRLKRL 144

Query: 127 VYGAKXXXXXXXXXXXXXXXXLRGTGFYQKAQLEIKRADGNGALIAEEVFQKTKEKFQMY 186
           VYGAK                LRGTG YQK+ LEIK+ADGNGA IAE+VFQ TKEKF++Y
Sbjct: 145 VYGAKAEAAIAIGFDDFIADALRGTGVYQKSSLEIKKADGNGAAIAEQVFQNTKEKFRLY 204


>AT3G05300.1 | Symbols:  | Cytidine/deoxycytidylate deaminase family
           protein | chr3:1508024-1508487 REVERSE LENGTH=113
          Length = 113

 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 80/115 (69%), Gaps = 3/115 (2%)

Query: 71  MVLNHTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
           MV  + DPTAHAEV AIREACKKLN+I+LS+CEIYASCEPCPMCFGAIHLSR+KRLVY A
Sbjct: 1   MVFKYKDPTAHAEVIAIREACKKLNEIKLSECEIYASCEPCPMCFGAIHLSRLKRLVYEA 60

Query: 131 KXXXXXXXXXXXXXXXXLRGTGFYQKAQLEIKRADGNGALIAEEVFQKTKEKFQM 185
           K                +RG G Y  + LEI + D +   IAE+VFQ TK KF +
Sbjct: 61  KVEAALAIGFNRILADGVRGVGCYHNSNLEITKLDLS---IAEQVFQNTKGKFSL 112


>AT1G68720.1 | Symbols: TADA, ATTADA | tRNA arginine adenosine
            deaminase | chr1:25804547-25808820 FORWARD LENGTH=1307
          Length = 1307

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 1/100 (1%)

Query: 31   DHKFLGKAVEEAYKGVDCGHGGPFGAVIVRNDEVVVSCHNMVLNHTDPTAHAEVTAIREA 90
            D  F+ +A+ EA K  D     P GAV+V + +++   +N+V    D TAHAE+  IRE 
Sbjct: 1110 DEIFMREALVEAKKAADTWEV-PVGAVLVHDGKIIARGYNLVEELRDSTAHAEMICIREG 1168

Query: 91   CKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
             K L    L+D  +Y + EPCPMC GAI  +R+  LV+GA
Sbjct: 1169 SKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGA 1208


>AT1G48175.1 | Symbols: emb2191 | Cytidine/deoxycytidylate deaminase
           family protein | chr1:17790957-17792066 FORWARD
           LENGTH=182
          Length = 182

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 10/108 (9%)

Query: 31  DHKFLGKAVEEAYKGVDCGHGGPFGAVIVRNDEVVVSCHNMVLNHTDPTAHAEVTAIREA 90
            H ++G A+ +A   ++     P G V + + +V+ S  N      + T HAE+ AI + 
Sbjct: 9   SHNYMGFALHQAKLALE-ALEVPVGCVFLEDGKVIASGRNRTNETRNATRHAEMEAIDQL 67

Query: 91  CKKLNQIELSD---------CEIYASCEPCPMCFGAIHLSRIKRLVYG 129
             +  +  LS          C +Y +CEPC MC  A+    IK + YG
Sbjct: 68  VGQWQKDGLSPSQVAEKFSKCVLYVTCEPCIMCASALSFLGIKEVYYG 115