Miyakogusa Predicted Gene

Lj4g3v2215590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2215590.1 Non Chatacterized Hit- tr|B4FE34|B4FE34_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,75,9e-17,Tmemb_14,Uncharacterised protein family UPF0136,
Transmembrane; seg,NULL; TRANSMEMBRANE PROTEIN 14, ,CUFF.50538.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43520.1 | Symbols:  | Transmembrane proteins 14C | chr3:1540...    72   4e-13
AT2G26240.1 | Symbols:  | Transmembrane proteins 14C | chr2:1116...    66   2e-11

>AT3G43520.1 | Symbols:  | Transmembrane proteins 14C |
           chr3:15406088-15407699 FORWARD LENGTH=240
          Length = 240

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 43/64 (67%)

Query: 163 YVHTELPLRPVFXXXXXXXXXXXXXXVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIM 222
           YV ++LP +PV               VMG+R+ +S K+FPAGVVS++S IMTGGY+HGIM
Sbjct: 177 YVFSQLPTKPVLASTVGVVMAGALMYVMGTRYMRSKKIFPAGVVSIMSFIMTGGYIHGIM 236

Query: 223 RSAH 226
           RS H
Sbjct: 237 RSLH 240


>AT2G26240.1 | Symbols:  | Transmembrane proteins 14C |
           chr2:11167496-11168373 REVERSE LENGTH=108
          Length = 108

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 43/64 (67%)

Query: 162 YYVHTELPLRPVFXXXXXXXXXXXXXXVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGI 221
           YYV+TELP  PV               +MGSR+ ++ KV PAG+VS+VSL+MTG YLHG+
Sbjct: 45  YYVYTELPGNPVLASSIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLHGL 104

Query: 222 MRSA 225
           +RS+
Sbjct: 105 IRSS 108