Miyakogusa Predicted Gene
- Lj4g3v2215340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2215340.1 Non Chatacterized Hit- tr|I1LYB2|I1LYB2_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,93.57,0,Rad51,DNA
recombination and repair protein Rad51, C-terminal; no
description,NULL; seg,NULL; ATPases,CUFF.50515.1
(342 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20850.1 | Symbols: ATRAD51, RAD51 | RAS associated with diab... 615 e-176
AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51... 345 2e-95
AT2G45280.1 | Symbols: ATRAD51C, RAD51C | RAS associated with di... 108 5e-24
AT2G45280.2 | Symbols: RAD51C | RAS associated with diabetes pro... 105 5e-23
AT5G57450.2 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair ... 99 6e-21
AT5G57450.1 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair ... 99 6e-21
AT2G28560.1 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam... 94 2e-19
AT2G28560.2 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam... 93 2e-19
AT2G28560.3 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam... 93 2e-19
AT2G28560.4 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam... 77 2e-14
AT1G07745.1 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51... 67 2e-11
AT1G07745.2 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51... 65 5e-11
AT1G79050.1 | Symbols: | recA DNA recombination family protein ... 52 5e-07
AT1G79050.2 | Symbols: | recA DNA recombination family protein ... 52 6e-07
>AT5G20850.1 | Symbols: ATRAD51, RAD51 | RAS associated with
diabetes protein 51 | chr5:7070758-7072860 REVERSE
LENGTH=342
Length = 342
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/342 (86%), Positives = 317/342 (92%), Gaps = 3/342 (0%)
Query: 1 MEQQRHQKTAXXXXXXXXXXXXHGPLPIEQLQASGIASIDVKKLKDAGICTVESVAYTPR 60
MEQ+R+Q HGP P+EQLQA+GIAS+DVKKL+DAG+CTVE VAYTPR
Sbjct: 4 MEQRRNQNAVQQQDDEETQ---HGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPR 60
Query: 61 KDLLQIKGISEAKVDKIVEAASKLVPMGFTSASELHVQRESIIQITTGSRELDKILDGGI 120
KDLLQIKGIS+AKVDKIVEAASKLVP+GFTSAS+LH QR+ IIQIT+GSRELDK+L+GGI
Sbjct: 61 KDLLQIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKVLEGGI 120
Query: 121 ETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180
ETGSITELYGEFRSGKTQLCHTLCVTCQLP+DQGGGEGKAMYIDAEGTFRPQRLLQIADR
Sbjct: 121 ETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180
Query: 181 FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGE 240
FGLNGADVLENVAYARAYNTDHQSRLLLEAASMM+ETRFA++IVDSATALYRTDFSGRGE
Sbjct: 181 FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIVDSATALYRTDFSGRGE 240
Query: 241 LSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATT 300
LSARQMHLAKFLRSLQKLADEFGVA+VITNQVV+QVDGSA+FAGPQ KPIGGNIMAHATT
Sbjct: 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAGPQFKPIGGNIMAHATT 300
Query: 301 TRLALRKGRGEERICKVISSPCLAEAEARFQILAEGVSDVKD 342
TRLALRKGR EERICKVISSPCL EAEARFQI EGV+D KD
Sbjct: 301 TRLALRKGRAEERICKVISSPCLPEAEARFQISTEGVTDCKD 342
>AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51)
family protein | chr3:8097948-8100740 REVERSE LENGTH=344
Length = 344
Score = 345 bits (886), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/315 (53%), Positives = 226/315 (71%), Gaps = 1/315 (0%)
Query: 28 IEQLQASGIASIDVKKLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIVEAASKLVPM 87
I++L A GI + DVKKL++AGI T + +K+L IKG+SEAKVDKI EAA K+V
Sbjct: 31 IDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNF 90
Query: 88 GFTSASELHVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTC 147
G+ + S+ ++R+S+++ITTG + LD +L GGIET +ITE +GEFRSGKTQL HTLCVT
Sbjct: 91 GYMTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTT 150
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL 207
QLP + GG GK YID EGTFRP R++ IA+RFG++ VL+N+ YARAY +HQ LL
Sbjct: 151 QLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 210
Query: 208 LEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAIV 267
L A+ M E F ++IVDS AL+R DF+GRGEL+ RQ LA+ L L K+A+EF VA+
Sbjct: 211 LGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVY 270
Query: 268 ITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKVISSPCLAEAE 327
+TNQV++ G + P+ KP GG+++AHA T RL RKG+G+ R+CKV +P LAEAE
Sbjct: 271 MTNQVIADPGGGMFISDPK-KPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAE 329
Query: 328 ARFQILAEGVSDVKD 342
A FQI G++D KD
Sbjct: 330 ASFQITQGGIADAKD 344
>AT2G45280.1 | Symbols: ATRAD51C, RAD51C | RAS associated with
diabetes protein 51C | chr2:18670103-18672041 FORWARD
LENGTH=363
Length = 363
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 146/299 (48%), Gaps = 36/299 (12%)
Query: 43 KLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIVEAA-------SKLVPMGFTSASEL 95
KL AG + S+A DL + I+E + +I++ A S+ + G +A ++
Sbjct: 36 KLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNGSRSLINGAKNAWDM 95
Query: 96 HVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGG 155
+ ES+ +ITT +LD IL GGI +TE+ G GKTQ+ L V Q+P + GG
Sbjct: 96 LHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGG 155
Query: 156 GEGKAMYIDAEGTFRPQRLLQI--------------------ADRFGLNGADVLENVAYA 195
GKA+YID EG+F +R LQI A++ + D+LEN+ Y
Sbjct: 156 LGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYF 215
Query: 196 RAYNTDHQSRLLLEAASMMVETR-FAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRS 254
R + Q L+ + E + V+IVDS T +R D+ +L+ R L++
Sbjct: 216 RVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYD---DLAQRTRVLSEMALK 272
Query: 255 LQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEER 313
KLA +F +A+V+ NQV ++ + Q+ G+ +H+ T R+ L G+ER
Sbjct: 273 FMKLAKKFSLAVVLLNQVTTKFSEGSF----QLALALGDSWSHSCTNRVILY-WNGDER 326
>AT2G45280.2 | Symbols: RAD51C | RAS associated with diabetes
protein 51C | chr2:18670103-18672041 FORWARD LENGTH=387
Length = 387
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 29/247 (11%)
Query: 88 GFTSASELHVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTC 147
G +A ++ + ES+ +ITT +LD IL GGI +TE+ G GKTQ+ L V
Sbjct: 112 GAKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNV 171
Query: 148 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQI--------------------ADRFGLNGAD 187
Q+P + GG GKA+YID EG+F +R LQI A++ + D
Sbjct: 172 QIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPED 231
Query: 188 VLENVAYARAYNTDHQSRLLLEAASMMVETR-FAVMIVDSATALYRTDFSGRGELSARQM 246
+LEN+ Y R + Q L+ + E + V+IVDS T +R D+ +L+ R
Sbjct: 232 ILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYD---DLAQRTR 288
Query: 247 HLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALR 306
L++ KLA +F +A+V+ NQV ++ + Q+ G+ +H+ T R+ L
Sbjct: 289 VLSEMALKFMKLAKKFSLAVVLLNQVTTKFSEGSF----QLALALGDSWSHSCTNRVIL- 343
Query: 307 KGRGEER 313
G+ER
Sbjct: 344 YWNGDER 350
>AT5G57450.2 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair
cross complementing 3 (XRCC3) | chr5:23274008-23274922
REVERSE LENGTH=304
Length = 304
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 126/284 (44%), Gaps = 46/284 (16%)
Query: 104 QITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
++TTG LD L GGI S+TE+ E GKTQLC L + QLP+ GG G ++Y+
Sbjct: 20 KLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYL 79
Query: 164 DAEGTFRPQRLLQIADRFGLNGADVLEN--------VAYARAYNTDHQSRLL--LEAASM 213
+E F +RL Q++ F + + N V ++ DH ++ ++
Sbjct: 80 HSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVG 139
Query: 214 MVETRFA--VMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAIVITN 270
+TRF ++++DS AL+R++F +L R K L++LA +F +AIVITN
Sbjct: 140 NSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITN 199
Query: 271 QVVSQVDGS-------------AVFAGPQVKPIGGNIMAHATTTRLALRK---------- 307
QV V+ S +G +V P G A+ +R + +
Sbjct: 200 QVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFISRSDGSIVKDRS 259
Query: 308 ----------GRGEERICKVISSPCLAEAEARFQILAEGVSDVK 341
R +R ++ SP L + F I EG+ V+
Sbjct: 260 EKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQ 303
>AT5G57450.1 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair
cross complementing 3 (XRCC3) | chr5:23274008-23274922
REVERSE LENGTH=304
Length = 304
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 126/284 (44%), Gaps = 46/284 (16%)
Query: 104 QITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
++TTG LD L GGI S+TE+ E GKTQLC L + QLP+ GG G ++Y+
Sbjct: 20 KLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYL 79
Query: 164 DAEGTFRPQRLLQIADRFGLNGADVLEN--------VAYARAYNTDHQSRLL--LEAASM 213
+E F +RL Q++ F + + N V ++ DH ++ ++
Sbjct: 80 HSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVG 139
Query: 214 MVETRFA--VMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAIVITN 270
+TRF ++++DS AL+R++F +L R K L++LA +F +AIVITN
Sbjct: 140 NSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITN 199
Query: 271 QVVSQVDGS-------------AVFAGPQVKPIGGNIMAHATTTRLALRK---------- 307
QV V+ S +G +V P G A+ +R + +
Sbjct: 200 QVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFISRSDGSIVKDRS 259
Query: 308 ----------GRGEERICKVISSPCLAEAEARFQILAEGVSDVK 341
R +R ++ SP L + F I EG+ V+
Sbjct: 260 EKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQ 303
>AT2G28560.1 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
protein | chr2:12237052-12239086 REVERSE LENGTH=371
Length = 371
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 32/265 (12%)
Query: 104 QITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
+ T + LD L GGI G +TEL G GK+Q C L ++ P+ GG +G+ +YI
Sbjct: 83 HLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142
Query: 164 DAEGTFRPQRLLQIA-----DRFGLNGA--DVLENVAYARAYNTDHQSRLLLEAASMMVE 216
D E F +R++++ + F L G ++ + R + + + + E + +++
Sbjct: 143 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 202
Query: 217 TRFAVMIVDSATALYRTDFSGRGELSA-RQMHLAKFLRSLQKLADEFGVAIVITNQVVSQ 275
+ ++++DS TAL SG + A RQ L + L+ LA+ + IV+TNQV SQ
Sbjct: 203 NQVKLLVIDSMTAL----LSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQ 258
Query: 276 ------------------VDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKV 317
D + + V +G N AHA T RL L G +RI KV
Sbjct: 259 NRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGIN-WAHAVTIRLVLEAKSG-QRIIKV 316
Query: 318 ISSPCLAEAEARFQILAEGVSDVKD 342
SP F I + G+S + D
Sbjct: 317 AKSPMSPPLAFPFHITSAGISLLSD 341
>AT2G28560.2 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
protein | chr2:12236876-12239086 REVERSE LENGTH=370
Length = 370
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 32/265 (12%)
Query: 104 QITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
+ T + LD L GGI G +TEL G GK+Q C L ++ P+ GG +G+ +YI
Sbjct: 83 HLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142
Query: 164 DAEGTFRPQRLLQIA-----DRFGLNGA--DVLENVAYARAYNTDHQSRLLLEAASMMVE 216
D E F +R++++ + F L G ++ + R + + + + E + +++
Sbjct: 143 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 202
Query: 217 TRFAVMIVDSATALYRTDFSGRGELSA-RQMHLAKFLRSLQKLADEFGVAIVITNQVVSQ 275
+ ++++DS TAL SG + A RQ L + L+ LA+ + IV+TNQV SQ
Sbjct: 203 NQVKLLVIDSMTAL----LSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQ 258
Query: 276 ------------------VDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKV 317
D + + V +G N AHA T RL L G +RI KV
Sbjct: 259 NRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGIN-WAHAVTIRLVLEAKSG-QRIIKV 316
Query: 318 ISSPCLAEAEARFQILAEGVSDVKD 342
SP F I + G+S + D
Sbjct: 317 AKSPMSPPLAFPFHITSAGISLLSD 341
>AT2G28560.3 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
protein | chr2:12236876-12238913 REVERSE LENGTH=338
Length = 338
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 32/265 (12%)
Query: 104 QITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
+ T + LD L GGI G +TEL G GK+Q C L ++ P+ GG +G+ +YI
Sbjct: 51 HLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 110
Query: 164 DAEGTFRPQRLLQIA-----DRFGLNGA--DVLENVAYARAYNTDHQSRLLLEAASMMVE 216
D E F +R++++ + F L G ++ + R + + + + E + +++
Sbjct: 111 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 170
Query: 217 TRFAVMIVDSATALYRTDFSGRGELSA-RQMHLAKFLRSLQKLADEFGVAIVITNQVVSQ 275
+ ++++DS TAL SG + A RQ L + L+ LA+ + IV+TNQV SQ
Sbjct: 171 NQVKLLVIDSMTAL----LSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQ 226
Query: 276 ------------------VDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKV 317
D + + V +G N AHA T RL L G +RI KV
Sbjct: 227 NRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGIN-WAHAVTIRLVLEAKSG-QRIIKV 284
Query: 318 ISSPCLAEAEARFQILAEGVSDVKD 342
SP F I + G+S + D
Sbjct: 285 AKSPMSPPLAFPFHITSAGISLLSD 309
>AT2G28560.4 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
protein | chr2:12237438-12238913 REVERSE LENGTH=243
Length = 243
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 104 QITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
+ T + LD L GGI G +TEL G GK+Q C L ++ P+ GG +G+ +YI
Sbjct: 51 HLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 110
Query: 164 DAEGTFRPQRLLQIA-----DRFGLNGA--DVLENVAYARAYNTDHQSRLLLEAASMMVE 216
D E F +R++++ + F L G ++ + R + + + + E + +++
Sbjct: 111 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 170
Query: 217 TRFAVMIVDSATALYRTDFSGRGELSA-RQMHLAKFLRSLQKLADEFGVAIVITNQVVSQ 275
+ ++++DS TAL SG + A RQ L + L+ LA+ + IV+TNQV SQ
Sbjct: 171 NQVKLLVIDSMTAL----LSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQ 226
>AT1G07745.1 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D
| chr1:2400797-2402842 REVERSE LENGTH=322
Length = 322
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 114/280 (40%), Gaps = 38/280 (13%)
Query: 48 GICTVESVAYTPRKDLLQIKGISE--AKVDKIVEAASKLVPM----------GFTSASEL 95
GI T+E DL ++ S+ D++ E + ++ + G +L
Sbjct: 26 GILTIEDFLL---HDLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLLEDL 82
Query: 96 HVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGG 155
H + ++ +TG +E D +L GG G +TEL G SGKTQ C +
Sbjct: 83 HRNKHTL---STGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASV-----AEN 134
Query: 156 GEGKAMYIDAEGTFRPQRLLQI--ADRFGLNGADVLENVAYARAY------NTDHQSRLL 207
G+ +Y+D +F +R+ Q + G V+ + Y +T +
Sbjct: 135 HLGRVLYLDTGNSFSARRIAQFICSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEIT 194
Query: 208 LEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAIV 267
L + E+R +++VDS ++L G G M +L L+KLA E +AI+
Sbjct: 195 LRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGRALMVAIGYL--LKKLAHEHSIAIL 252
Query: 268 ITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRK 307
+TN V A G + KP G RL+L +
Sbjct: 253 VTNHTV-----GAGGEGGKTKPALGETWKSIPHVRLSLSR 287
>AT1G07745.2 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D
| chr1:2400797-2402492 REVERSE LENGTH=304
Length = 304
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 23/239 (9%)
Query: 77 IVEAASKLVPMGFTSASELHVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGK 136
++E + + G +LH + ++ +TG +E D +L GG G +TEL G SGK
Sbjct: 46 LIERQCRPLVNGLKLLEDLHRNKHTL---STGDKETDSLLQGGFREGQLTELVGPSSSGK 102
Query: 137 TQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI--ADRFGLNGADVLENVAY 194
TQ C + G+ +Y+D +F +R+ Q + G V+ +
Sbjct: 103 TQFCMQAAASV-----AENHLGRVLYLDTGNSFSARRIAQFICSSSDATLGQKVMSRILC 157
Query: 195 ARAY------NTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHL 248
Y +T + L + E+R +++VDS ++L G G M
Sbjct: 158 HTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGRALMVA 217
Query: 249 AKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRK 307
+L L+KLA E +AI++TN V A G + KP G RL+L +
Sbjct: 218 IGYL--LKKLAHEHSIAILVTNHTV-----GAGGEGGKTKPALGETWKSIPHVRLSLSR 269
>AT1G79050.1 | Symbols: | recA DNA recombination family protein |
chr1:29737084-29740140 REVERSE LENGTH=439
Length = 439
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 32/210 (15%)
Query: 105 ITTGSRELDKILDGGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMYI 163
++G LD L GG+ G + E+YG SGKT L H + +L G AM +
Sbjct: 117 FSSGILTLDLALGGGLPKGRVVEIYGPESSGKTTLALHAIAEVQKL-------GGNAMLV 169
Query: 164 DAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMI 223
DAE F P + G DV EN+ + N + + LE A M + +I
Sbjct: 170 DAEHAFDPAYSKAL-------GVDV-ENLIVCQPDNGE----MALETADRMCRSGAVDLI 217
Query: 224 -VDSATALY-RTDFSGRGELSARQMHL-----AKFLRSLQKLADEFGVAIVITNQVVSQV 276
VDS +AL R + GE+ +QM L ++ LR + A + G ++ NQ+ ++
Sbjct: 218 CVDSVSALTPRAEI--EGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 275
Query: 277 DGSAVFAGPQVKPIGGNIMAHATTTRLALR 306
+ P+V GG + + RL +R
Sbjct: 276 --GVYYGNPEVTS-GGIALKFFASVRLEIR 302
>AT1G79050.2 | Symbols: | recA DNA recombination family protein |
chr1:29737364-29740140 REVERSE LENGTH=343
Length = 343
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 32/210 (15%)
Query: 105 ITTGSRELDKILDGGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMYI 163
++G LD L GG+ G + E+YG SGKT L H + +L G AM +
Sbjct: 117 FSSGILTLDLALGGGLPKGRVVEIYGPESSGKTTLALHAIAEVQKL-------GGNAMLV 169
Query: 164 DAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMI 223
DAE F P + G DV EN+ + N + + LE A M + +I
Sbjct: 170 DAEHAFDPAYSKAL-------GVDV-ENLIVCQPDNGE----MALETADRMCRSGAVDLI 217
Query: 224 -VDSATALY-RTDFSGRGELSARQMHL-----AKFLRSLQKLADEFGVAIVITNQVVSQV 276
VDS +AL R + GE+ +QM L ++ LR + A + G ++ NQ+ ++
Sbjct: 218 CVDSVSALTPRAEI--EGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 275
Query: 277 DGSAVFAGPQVKPIGGNIMAHATTTRLALR 306
+ P+V GG + + RL +R
Sbjct: 276 --GVYYGNPEVTS-GGIALKFFASVRLEIR 302