Miyakogusa Predicted Gene

Lj4g3v2215110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2215110.1 Non Chatacterized Hit- tr|G7L8E2|G7L8E2_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,51.59,4e-19,seg,NULL; Auxin_inducible,Auxin responsive SAUR
protein,CUFF.50488.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20820.1 | Symbols:  | SAUR-like auxin-responsive protein fam...   113   3e-26
AT1G17345.1 | Symbols:  | SAUR-like auxin-responsive protein fam...   109   3e-25
AT1G72430.1 | Symbols:  | SAUR-like auxin-responsive protein fam...   104   1e-23
AT3G12955.1 | Symbols:  | SAUR-like auxin-responsive protein fam...    69   9e-13

>AT5G20820.1 | Symbols:  | SAUR-like auxin-responsive protein family
            | chr5:7046911-7047294 REVERSE LENGTH=127
          Length = 127

 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 82/131 (62%), Gaps = 11/131 (8%)

Query: 1   MARGG-KLTKLKSALKKWNSFSSNGS---ATKHXXXXXXXXXXXXXXLQTVYVGKSRRLY 56
           MA+GG KL KLKS LKK NSF++  +   A  +              LQTVYVG++RR Y
Sbjct: 1   MAKGGNKLMKLKSVLKKLNSFNTKPNQPPAQTNHSRSSAVSAFPSEDLQTVYVGRTRRTY 60

Query: 57  RVSSDVVDHPVFRELVERSRESQQNDSDSDAAVNVACEVVLFEHLLWMLENADP---QPD 113
            VSSDVV HP+F++L              D +++V+CEVVLFEHLLWMLENAD    +P+
Sbjct: 61  HVSSDVVSHPLFQQLAA----VDGGCGSEDGSISVSCEVVLFEHLLWMLENADADESRPE 116

Query: 114 SLDELADFYAC 124
           S+ EL +FYAC
Sbjct: 117 SVYELVEFYAC 127


>AT1G17345.1 | Symbols:  | SAUR-like auxin-responsive protein family
            | chr1:5940525-5940920 FORWARD LENGTH=131
          Length = 131

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 9/131 (6%)

Query: 1   MARGGKLTKLKSALKKWNSFSSNGSATKHXXXXXXXXXXXXXXLQTVYVGKSRRLYRVSS 60
           MA  GKLTKLKSA+KKW S + N  +T                L  VYVGKSRR Y +SS
Sbjct: 1   MAIFGKLTKLKSAIKKWPSLTKNHHSTMCTASTAVSEVSKCEDLHVVYVGKSRRPYMLSS 60

Query: 61  DVVDHPVFRELVERSRESQQNDSDSDAAVNVACEVVLFEHLLWMLENA--------DPQP 112
            V+ HP+F+EL++RS    +   D +  V VACEVVLFEHLLWML+N+        D + 
Sbjct: 61  HVIAHPLFQELLDRSSRFIEERHDQE-TVLVACEVVLFEHLLWMLKNSSSDHGDEDDRER 119

Query: 113 DSLDELADFYA 123
            S++ELA+FY 
Sbjct: 120 GSVEELAEFYT 130


>AT1G72430.1 | Symbols:  | SAUR-like auxin-responsive protein family
            | chr1:27265150-27265509 REVERSE LENGTH=119
          Length = 119

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 76/123 (61%), Gaps = 5/123 (4%)

Query: 1   MARGGKLTKLKSALKKWNSFSSNGSATKHXXXXXXXXXXXXXXLQTVYVGKSRRLYRVSS 60
           MA+ GKLTKLKSA+KKW SF+ N   +                L  VYVG++RR Y +  
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAKNHHHST-SSAAVSDELSEDNNLHVVYVGQTRRPYMLRP 59

Query: 61  DVVDHPVFRELVERSRESQQNDSDSDAAVNVACEVVLFEHLLWMLENADPQPDSLDELAD 120
           D++ HP+F+ELV+R   S     + D  + VACEVVLFEHLLWML++   +  S++ELA+
Sbjct: 60  DIISHPLFQELVDR---SSSRSIEQDREIVVACEVVLFEHLLWMLKSGQ-EGGSVEELAE 115

Query: 121 FYA 123
           FY 
Sbjct: 116 FYT 118


>AT3G12955.1 | Symbols:  | SAUR-like auxin-responsive protein family
            | chr3:4135659-4136078 REVERSE LENGTH=139
          Length = 139

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 45  QTVYVGKSRRLYRVSSDVVDHPVFRELVERSRESQQNDS-DSDAAVNVACEVVLFEHLLW 103
           QTV VG++++ Y +S   + HP+   LVE+ +  +++D+ D    + V CEVVLF+HLLW
Sbjct: 56  QTVLVGRTKKPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHLLW 115

Query: 104 MLENADPQP--DSLDELADFY 122
           MLE  D     +SLD+ A  Y
Sbjct: 116 MLEYGDEVHILESLDDFAHLY 136